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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0328000 |
| Transcript ID | LotjaGi3g1v0328000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Molybdopterin synthase sulfur carrier subunit; TAIR: AT4G10100.1 co-factor for nitrate, reductase and xanthine dehydrogenase 7; Swiss-Prot: sp|Q9S7A3|MOC2A_ARATH Molybdopterin synthase sulfur carrier subunit; TrEMBL-Plants: tr|I3T2W6|I3T2W6_LOTJA Molybdopterin synthase sulfur carrier subunit; Found in the gene: LotjaGi3g1v0328000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:69546589..69549594) extracted from Lotus japonicus Gifu genome v1.2.
ATTTAAGATGAAGGGATGGATAGTGATTAGTGACGAGAAAATCAACACAGGAAGAGAAGATAAGAGAAGACCCACAAGCT CCATCTTCGAACTCCACCAATAACGGTAAACAGTTTCTTTCTCTTTGGTGAGGTTTTGGAATTGGGGCAAAGTTTCAATT TTTTCCCTCAATTGTCACTCATTGCCACACTATATCTGAAATTAAGTTAGTAGGCATGTTGATTTGCATGCAACCAGCTG TGTATATGAAAAGGAATAATTTTTGGGAGTGATTTGTTGGAAATTGGTAATTTTTGTCTTGTACAATGAATCATCATCAT TTGGCAGTTTTCTTCACCTTCTTTTTAGCTGCAGCATGAATCATGTGACTGAGGAGAATTGTATCTGTGAAAATCATTGT GTAACAACTATTTTAGGAGTAGGATTAAGCTTTTGGTTTGTGACCTTTGTGGACTGGTAGCCTTTTCTAAAAGGAATTAG AGACTATCTATCACATTTCTTCCTTTCCTTGCCTAAGGATAAAATACTGATCTGGTTTGTTCCTGGTTCTAGGCTCTGAT GTGGCTACTTATTACCAGTAGTATATTAGTATAGCTGTTGATTAGCTGTGTTTTGTTATTAAGTTAGTGAGAAAACACTG ATAGAAACTTGGAATTAGAGTATTAATAATGGAGACCAAGATACAAGTGGAGGTATCCCTCTGTTGAGTGTTTAGAATGA AATCACAAAAAAAATGCTGCAAGAAAGAAAAAAACAAGGGAAATTCTGCAGACACACAGAACATACCTCCTGTCTCATTA CCTCTCCTCTCCAACTTGCTTGATTTTAACCAAGATCTCCCAGATCCTTCCCTCCTCTTTTATCCTTTCTTTAACTAGTT TCCTCCCCCTACATCCCTTGCCATTCCTCTTCTGCTCCATATTCACATTGTCCTCAAAGTAGAAGCTGAATGAGGCGTAA CAACTAGCGTATGCACTTGGAGTTTATGATTATTCTTGGGACTGGTTGTCATAGACTACCTACATCCCTCCTCTTTTATT TTGTTCTTTGAGAGATTTTATTATATATGCTATTATCATCTTTATATTCCTGTTTTACTTGCTGCTGATCATATTTAATT TGTTGAATCTGAATATTGAAATTTGAAATGATAACATGCTGATAATATATCAGTGTTCTTAATTGATGGTTGGTCATGGT CAAAGTTCAAGTTCAGCATCAAGTACCTGAAAGTTGGGGATATTATATCCATCAATTTCATGTAGATTTGTTCCATTGAG AACTTGAACATGGTCAGCATTTTCTGTTATTTTCAGTTGTATGACAAAAAAATTTCTCATAAAAAATCTGTGTCTTTTTG GCTCTTAGCTATCAAGCTGACCAATGTTTCTACAGCCTCAAAATGTGTGGTTCCTACAGATTCTGCACATAGTTTGTCAA AATCTGCTGTCTGTGCCCTTTAGTTCATAATTTGGGTTATGCACGTTTGGTTTTGGTCCTTTATTTCTTTGTTAGAAAAT TAAAACACAAGGATGTCAACCATGAAATTCCGTATTTTCACTATTTTTAGTATTTGTCGATTGATAGTATATTTTTTGTC AAAATCAAAGCTGTTTCTGTGTAATTCCTGTTTCGGGCAACCTCTGTTGTTTTACTTAGGCTATTCACATGATGTTAATT GCTCTGCAAATCTAAGATCTATCATTTTATCAGTTAGATGATTGAGAGTTTTTTTTTTAATTGTCTTAGAAGTGGTCATA GATGAACTGTGAGCATTGATTTATGTTATCATGTTGAATTTTTGGCAGTTTGCCGGAAACATCTTGTGTCCACTAGTTTG TCTCTAGCTGCTTAACGTATGATGGAAGGAGATATTAATACTTGCGATGGAGACAACATGCACAGCAAGAAAGAAAGTGC TCTGGTGAAGATAAAAGTATTGTTTTTCGCTAGAGCCCGTGATCTTACTGGCTTGAGTGAGGTGCCCCTGGAGGTCACAT CTGGAAGTACCACTCGTGATTGTTTGAAAAAGCTTCTTGCCCAGTTTCCGAGTTTGGAAGAAATACAAGGGTGCATGGTT TTGGCTCTGAATGAGGAGTATACAACTGAGTCAACAATTGTTAAGGACACAGATGAGTTGGCCATAATACCTCCAATAAG TGGTGGTTGAACTACTTAAGTTTATTACTATAGGGTACTTAATTATAATGTTGTGCCCTGATAATTATTTAGCTGAGCAA AATCTGAATTTGAAGAAATCCTGTAAAGTTATGTATCATTTCCAGTAATTAAATGGTGGAGGTGAAGTTCTCAAGAGGTT AAGCTTTCTTGCCAGAATATGCATGTTGAGATTTTTTCCTGTATCTTTAAAGCAGTTCAATGCTTGAGGTTAATTGAAAG GAATTGTATGAGTTCAAGTTTTTGAGAAGTCCACCACTCTATGGAATGACCCTATCACTATGTATTGGAAAAATGACTGC AGACTTTAAGTTAGTATTGCAATGATTTCAATAAAGGATTTGTAAACAATTATAAAATTTATAGTCCTAGAGAAAAGAAT AATCTTGTATATTATGTTGTCTTTGTCTTTGTTGCTCTGAAACCAGATGCAGAAAGATCAAGTTCATTGTCTTGTCATTC TGAGGCCCTTATCACAAACATTATTTTGGTTATTGCTCTTGAAGTGAAGAACGCTAGTTCAGCTTCTCTCACATTTTATT TTATACTCTTAATAGTCTTATTCTATCCTTCTTGTTATTGTGACTGTAATTTTGGTAGAGAAGATATACTTTTACCATGG ATATTTTTTTAATTACTGGTTACCTGTGTAGGAATAGGTTGTTTCTTTCTTTGGTTCTTCTCGAATGTAAGAGGATCTAT GTTCTTAAGGGGTGGCATATGTAAATTAGATATGTCAGATATATTTTTCAGGGGGGAATGCTATGAGTTTACTTTGAAAT GTATTTTTCTTTTTGAATGCTGAATGAAGAATATATTTGAATCAAA
CDS sequence (LotjaGi3g1v0328000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGAAGGAGATATTAATACTTGCGATGGAGACAACATGCACAGCAAGAAAGAAAGTGCTCTGGTGAAGATAAAAGT ATTGTTTTTCGCTAGAGCCCGTGATCTTACTGGCTTGAGTGAGGTGCCCCTGGAGGTCACATCTGGAAGTACCACTCGTG ATTGTTTGAAAAAGCTTCTTGCCCAGTTTCCGAGTTTGGAAGAAATACAAGGGTGCATGGTTTTGGCTCTGAATGAGGAG TATACAACTGAGTCAACAATTGTTAAGGACACAGATGAGTTGGCCATAATACCTCCAATAAGTGGTGGTTGA
Protein sequence (LotjaGi3g1v0328000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMEGDINTCDGDNMHSKKESALVKIKVLFFARARDLTGLSEVPLEVTSGSTTRDCLKKLLAQFPSLEEIQGCMVLALNEE YTTESTIVKDTDELAIIPPISGG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 103 | 97 | 1.9E-37 | – | |
| SUPERFAMILY | 23 | 101 | 79 | 1.21E-17 | ||
| Gene3D | 24 | 103 | 80 | 6.8E-23 | ||
| Hamap | 24 | 103 | 80 | 26.238 | ||
| CDD | 25 | 103 | 79 | 1.49472E-33 | – | |
| TIGRFAM | 25 | 103 | 79 | 7.9E-24 | – | |
| Pfam | 27 | 103 | 77 | 1.1E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Cytosol | The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. | ||
| Biological process | Mo-molybdopterin cofactor biosynthetic process | The chemical reactions and pathways resulting in the formation of the Mo-molybdopterin cofactor, essential for the catalytic activity of some enzymes. The cofactor consists of a mononuclear molybdenum (Mo) ion coordinated by one or two molybdopterin ligands. |
Expression pattern of LotjaGi3g1v0328000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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