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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0331500 |
| Transcript ID | LotjaGi3g1v0331500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FAD-binding Berberine family protein, putative; TAIR: AT4G20860.1 FAD-binding Berberine family protein; Swiss-Prot: sp|Q9SUC6|BBE22_ARATH Berberine bridge enzyme-like 22; TrEMBL-Plants: tr|I1KFV4|I1KFV4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0331500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:70048035..70049913) extracted from Lotus japonicus Gifu genome v1.2.
ATTGATTGATACTGATGATATGTATGAAGCAAGACTCAATCAGCTAAAGGTAGAGAAGAAAACACAGAGATGGGATTCCT TGTGGTGTTTCTGGTTCTGCTTCTTTCAATCTCATCATGTGAAGCTTCTATTTTTGCTGACAAGAGTTTCAGGGAGTGCA TGTTTGCCAGAGTTGGCACTTCTGAATCCACTGAAAAAGTAGTCTTCACCCCATCCTCCTCCTCATACTCACAAGTGTTA GAATCATTGGAGCAAAATCCTAGATGGACAGATTCCTCAAACAAGCCTCTTCTCATCATAACACCATTCCATGAATCAGA AATCCAAGCAGCCATTCTATGCAGCAAGGAGCATGGTCTGCAGATCAGGGTCAGAAGTGGTGGCCATGATTATGAAGGAC TATCTTATCTCTGTAAGGCCCCATTTATATTGGTTGATCTCATCAACATCAAATCCATTGAAATCAACCTTGCTGATGAG ACAGCTTGGGTTCAGGCTGGGGCAACATTGGGTGAACTCTACTATAAAATTTCCAAAGCAAGTCAAGTTCATGGCTTCCC TGCAGGAATCTGTCCAAGTGTTGGGGTGGGTGGGCACATCAGTGGAGGAGGGTTTGGCACCATGTTGAGGAAGCATGGTC TAGCAGCAGACCATGTTGTTGATGCTTACCTGATTGATGTGAATGGGAGGGTTCTTGATAGAAAATCAATGGGAGAAGAT GTTTTCTGGGCCATTAGAGGAGGTAGTGCTACTAGTTTTGGAGTCATTCTTGCATGGAAGATCAGGTTGGTTAGAGTTCC ACCTATTGTTACTGGGTTCAACATTCGCAGAACACTGGAAGAAGGAGCTACTAAGCTCATCCATAAGTGGCAACACATAG CACATAAATTGCATGAAGATCTTTTCATTAGAGTACTAGCTCAGAATAGTGGTGTCAATTCAAAAACAATCCAAGTAACC TTCAACTCACTCTTCCTAGGAGGAATTGACAGATTAATCCCAATGATGAATGAGAGGTTCCCAGAATTGGGATTGCAGGC CAAAGACTGCACTGAAATGAGTTGGGTTGAATCATTTCTGTATTTTAATGGACACAACGAATATGACCCTCTAGAATTCT TGCTCAACAGAACCACCATGTGGAAAAGCTCTTTCAAGGCCAAGTCTGACTTTGTGAAAAAGCCTATACCAGAAACTGGC CTAGAAGGGATTTGGCCAATGCTTCTAAAAGAAGAAGCAGTAGCAATGCTGATCATGGAACCTTTAGGTGGAAGAATGAA TGAAATTGCAAAATCCAAAATCCCCTTTCCCCACAGAAGGGGAAACTTGTACAACATACAATACATGGTCAAGTGGGAAG TGAACAGCATTGAAGCATCCAACAAGCACCTACAATGGATGAGAATGCTTTACAAATACATGACTCCTTATGTTTCAAAA TCTCCTCGAGCTTCCTATTACAACTATAGGGATCTTGATTTAGGTATCAACAAGTATGACAACACAAGTTACTCAGAATC AAGTGTCTGGGGCAAGAAGTACTTCAAGGGAAACTTCAGGAGATTGGCAAAAATTAAGACAAAGTTTGATCCCCAAAATT TTTTCAGGAGTGAGCAGAGTATTCCTCTCTTGAATTAGAAGCATCTAGAACAATAATGTAGCACTATAATATAGTAGTTA TACATGGATAAGAAATATAAAACATCTATTATGTTAACCCTCTGCTTGATATGTTTGTAATAAGCCCAACCCTGAATGGT TTTCTGCCTATGCAGACATTTCAAAGGTAGGAGGTTACAGAAATGGAAATGATGTATTTTCATAATTAGCGTGGACTCGA GTAGCAGCACTTATTGAAGTCACAAGATCACATAAGAAT
CDS sequence (LotjaGi3g1v0331500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGATTCCTTGTGGTGTTTCTGGTTCTGCTTCTTTCAATCTCATCATGTGAAGCTTCTATTTTTGCTGACAAGAGTTT CAGGGAGTGCATGTTTGCCAGAGTTGGCACTTCTGAATCCACTGAAAAAGTAGTCTTCACCCCATCCTCCTCCTCATACT CACAAGTGTTAGAATCATTGGAGCAAAATCCTAGATGGACAGATTCCTCAAACAAGCCTCTTCTCATCATAACACCATTC CATGAATCAGAAATCCAAGCAGCCATTCTATGCAGCAAGGAGCATGGTCTGCAGATCAGGGTCAGAAGTGGTGGCCATGA TTATGAAGGACTATCTTATCTCTGTAAGGCCCCATTTATATTGGTTGATCTCATCAACATCAAATCCATTGAAATCAACC TTGCTGATGAGACAGCTTGGGTTCAGGCTGGGGCAACATTGGGTGAACTCTACTATAAAATTTCCAAAGCAAGTCAAGTT CATGGCTTCCCTGCAGGAATCTGTCCAAGTGTTGGGGTGGGTGGGCACATCAGTGGAGGAGGGTTTGGCACCATGTTGAG GAAGCATGGTCTAGCAGCAGACCATGTTGTTGATGCTTACCTGATTGATGTGAATGGGAGGGTTCTTGATAGAAAATCAA TGGGAGAAGATGTTTTCTGGGCCATTAGAGGAGGTAGTGCTACTAGTTTTGGAGTCATTCTTGCATGGAAGATCAGGTTG GTTAGAGTTCCACCTATTGTTACTGGGTTCAACATTCGCAGAACACTGGAAGAAGGAGCTACTAAGCTCATCCATAAGTG GCAACACATAGCACATAAATTGCATGAAGATCTTTTCATTAGAGTACTAGCTCAGAATAGTGGTGTCAATTCAAAAACAA TCCAAGTAACCTTCAACTCACTCTTCCTAGGAGGAATTGACAGATTAATCCCAATGATGAATGAGAGGTTCCCAGAATTG GGATTGCAGGCCAAAGACTGCACTGAAATGAGTTGGGTTGAATCATTTCTGTATTTTAATGGACACAACGAATATGACCC TCTAGAATTCTTGCTCAACAGAACCACCATGTGGAAAAGCTCTTTCAAGGCCAAGTCTGACTTTGTGAAAAAGCCTATAC CAGAAACTGGCCTAGAAGGGATTTGGCCAATGCTTCTAAAAGAAGAAGCAGTAGCAATGCTGATCATGGAACCTTTAGGT GGAAGAATGAATGAAATTGCAAAATCCAAAATCCCCTTTCCCCACAGAAGGGGAAACTTGTACAACATACAATACATGGT CAAGTGGGAAGTGAACAGCATTGAAGCATCCAACAAGCACCTACAATGGATGAGAATGCTTTACAAATACATGACTCCTT ATGTTTCAAAATCTCCTCGAGCTTCCTATTACAACTATAGGGATCTTGATTTAGGTATCAACAAGTATGACAACACAAGT TACTCAGAATCAAGTGTCTGGGGCAAGAAGTACTTCAAGGGAAACTTCAGGAGATTGGCAAAAATTAAGACAAAGTTTGA TCCCCAAAATTTTTTCAGGAGTGAGCAGAGTATTCCTCTCTTGAATTAG
Protein sequence (LotjaGi3g1v0331500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGFLVVFLVLLLSISSCEASIFADKSFRECMFARVGTSESTEKVVFTPSSSSYSQVLESLEQNPRWTDSSNKPLLIITPF HESEIQAAILCSKEHGLQIRVRSGGHDYEGLSYLCKAPFILVDLINIKSIEINLADETAWVQAGATLGELYYKISKASQV HGFPAGICPSVGVGGHISGGGFGTMLRKHGLAADHVVDAYLIDVNGRVLDRKSMGEDVFWAIRGGSATSFGVILAWKIRL VRVPPIVTGFNIRRTLEEGATKLIHKWQHIAHKLHEDLFIRVLAQNSGVNSKTIQVTFNSLFLGGIDRLIPMMNERFPEL GLQAKDCTEMSWVESFLYFNGHNEYDPLEFLLNRTTMWKSSFKAKSDFVKKPIPETGLEGIWPMLLKEEAVAMLIMEPLG GRMNEIAKSKIPFPHRRGNLYNIQYMVKWEVNSIEASNKHLQWMRMLYKYMTPYVSKSPRASYYNYRDLDLGINKYDNTS YSESSVWGKKYFKGNFRRLAKIKTKFDPQNFFRSEQSIPLLN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 19 | 19 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 23 | 23 | - | – | |
| Phobius | 3 | 14 | 12 | - | – | |
| Phobius | 15 | 19 | 5 | - | – | |
| Phobius | 20 | 522 | 503 | - | – | |
| Gene3D | 22 | 127 | 106 | 5.2E-37 | ||
| PANTHER | 39 | 521 | 483 | 1.3E-239 | – | |
| PANTHER | 39 | 521 | 483 | 1.3E-239 | – | |
| SUPERFAMILY | 45 | 244 | 200 | 5.14E-46 | ||
| ProSiteProfiles | 69 | 243 | 175 | 17.876 | ||
| ProSitePatterns | 73 | 106 | 34 | - | ||
| Pfam | 73 | 209 | 137 | 2.2E-26 | ||
| Gene3D | 132 | 519 | 388 | 1.2E-157 | – | |
| Gene3D | 246 | 458 | 213 | 1.2E-157 | – | |
| Pfam | 462 | 519 | 58 | 8.2E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Molecular function | Flavin adenine dinucleotide binding | Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. | ||
| Molecular function | FAD binding | Interacting selectively and non-covalently with the oxidized form, FAD, of flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes. |
Expression pattern of LotjaGi3g1v0331500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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