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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0334200 |
| Transcript ID | LotjaGi3g1v0334200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sesquiterpene synthase; TAIR: AT5G23960.2 terpene synthase 21; Swiss-Prot: sp|Q6Q3H3|TPSGD_VITVI (-)-germacrene D synthase; TrEMBL-Plants: tr|Q5UBY0|Q5UBY0_MEDTR Sesquiterpene synthase; Found in the gene: LotjaGi3g1v0334200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:70382156..70385366) extracted from Lotus japonicus Gifu genome v1.2.
CACCTTGTTGGTGTACTGACTTCTTCTCATTTGAAGCACATGAAAGTGTACAAAAATATTTTTCCCGCCTATAATTGTAT GCATCCAAGGTACGTACATATTCTTTTTGAGTTTGTAATCTCCTATAAATGCACGCATCAAGTTACGTTCTTCACCACTC ACAACAACTGAACGCGATTATTAGTTTGAAACTTTGAATTCTTAGTGTATTCCTTGAAAACAAAGTTGATTCTTAATTTT AACAAGAACGATTATGTCTGTTTCAGCAGCAGCAATATCACTGGTTACTCCAACTCTTAATTCATCTTCTGATTTCTCTC GGCGTTCAGCAAATTATCATCCCAGCATTTGGGGAGATCGTTTTATTCAATATATTGAGGAGCCTACGGTAATTAGTGTC TCTTAAATTGTTTTTATTAAGCTTTGCATATAAAATACGTCATACGTGTATGTGTTTTGTTGTTAAACATTTGGTTCTTA ACTTTTGCATGGAACGGTGAAAATTTTGTCGAGAACACACTAAAATTTAGTAATAGATTTATATAGATTATAAGTCATGT TTTAGTTTTTTTTTTTTTTTAGATAAGCCATGATTGTATTGAAAGGAAGTATGAGAGGTACTTCAACCCAAAACAGAAAA AGAAAAAAAGAAAAATACTAACCAGCCACAAAAGATAAAAGTAAAAAAACTGCAGACATACTCATGTTTTAGTAGGTCAC ATGACATTTTTTTCTTATTCATATAATGAGTAAATAATATATATTCTTGTCGTTAATAACATTTATTTATAATTCACACA TAATTAATAATTAAGAATACTATTTTGCATAAAATTTTACTCTTATTACTATCATCATTTGAGTTTTAACATTTGCAGGA AGTCGATGAAACTATCACGAACAAAATTATAGTACTAAAAGAAGAAGTGAGAAAGATGCTAGTGTTTGTGAATGAAAAGG CTATAAAACCCTTGAGAGAATCTAACTTGATTGATTCAATTCAACGACTGGGATTATGCCATCATTTTGAGAATGAGATA GGAGAAGTATTGCAACATATTCACAATAACTATGTTGAAAATGGTAAAATAACTCTCGATGAAGACCTACATGCTCTTGC TCTTGTCTTTAGGTTGCTGAGACAACAAGGATATCATATTTCACCCGGTAGGCCCAACTTACCTATGATTAAATTTCAAG TTTTCATAACAAACAAAAAAAGAGAAAACAAATTAAGATCTTATATATATCTTGTGGTTGGTGAATAAATCTCAGATGTG TTTAAGAAGTTCAAGAATGAGCAAGGGAACTTCAGTGAAACACTTGTTACTGACGTTGAGGGAATGCTTAGCTTGTACGA AGCTTCACATCTCAAGATTCATGGGGAAGAGATATTAGATGAAGCTCTTGCTTTCACTTCCTCAAACCTTGAGTTCATCA CAACCAAATTGAGTCCCTCTCTTGTCACAAAAGTGAGTTATAGCTTAAAGCGTCCATTTCACAAGAACTTGCCTAGGCTA GTGGCAGCGCATTACATTTCGACGTATAAGGAAGACCCTTCCCATGATGCAACTCTACTATTATTTGCCAAATTGGATTT TAACAAGCTCCAAAAACTACATCAGAAGGAAGTTGGGGTTATATCAAAGTAAGTTTTTCAACGACACAATATTTAATAAT AATTTTAACAAAGCATAAGTCTTATGCCTAGTTATTTGTATTGCTTGACAAATTAGGTGGTGGAAAGGTTTGGATTTTGC AACCAAATTGCCCTTTGCCCGCAATAGGATAATAGAAATTTACTTCTGGATATTGGGAGTGTATTTCGAGCCCAAGTACT CGTTCGCTAGAAGGCTAATGACCAAGATGCTTTCTCTGACTTCAGCAATTGATGACATATATGATGTTTTTGGTACAATG GAAGAGTTACAACTTTTCACGGAAGCTATCGAAAGGTTTGATGTTTATGTTAATCCTAACATTTTCGGGATATTCTACCT TATCCTTATATGACCTTTAAGTCAATATATGGAAATTTTAGGTGGGATATAAGTTGCATGGATTTCCTACCAGAATACAT GAAGTTTTGCTACAAAGCCCTCCTGGATGTTTATGAAGAAATGGAGCAGGAGATGTCCAAAGAAGGAAGAGAGTTTAGTG TAATCTATGCGAAAAATGAAGTAAAACCTTGACTCTTCTAGTTTCCAAGTGTGTTTTTTTGTTTTTTTTCATATGGACAA GATCGAACTAGAAGTTAGGTAGGAAATGTAGAAATATGGTATATCTAACTTTAACTTCTTCTTGTAAATTATTTGGTTTG TGTACCAGATGAAAAGGGTGGTCCAAGCCTACTATGCTGAAGCGAAATGGTTCAATAGCAATTATACACCAACAATGGAA GAGTATATGGGAGTTGCAAAGGTAACTTCCGCTTACCGTATGATTGCTACAACATCCTTCGTTGGGATGGGATCTATTGC TACAAAACAGGTCTTCCAATGGGTAACCAATGACCCTAAAATTGTTAATGCATCAACAATTATTTGCAGACTCATGGATG ATATTGTTTCCAATGAGGTATTCAAGCAGATATAATATCAATTTCCTTATTTTATTTATTAATATTCTAATTAAAAATAT ATGTATATGTGTTTGATATATAGTTTCTTCGATCCCATTATTTTGATTAGTTGGAGCAGAAGAGAGGGCATGTGGCCTCT GCTATTGAGTGCTACATGAAACAACATGGTGTCTCAAAAGAAGATGCCATTAAGGAGCTTTCACTACAAGTGACAAATGC TTGGAAGGATATCAATGAGGAACTCCTTGACCCTACTGAAGTTCCAAAGCCTCTACTTATGCGTGTTCTCAACTTGTCAC GTGTAATTGATGTTCTTTACAAAGATTCAGATGGTTACACTCACTCTGGAGAATCAACAAAGAAAATTATTGAAGCTCTT CTCCTTAATCCAATATGAGAATGGGGCTAGTAATTATGTGCATGCTTTAGGACTGCAACTAAGTCTTGTGGATTGAGTAA TTTCAATTTATCTTTTTAAGATGTAATGTTTCAATTATATTGTTAGTGGCTGAAATCATGGAAATAAGGAGTTAGTGCCT CCAATCAGGGAGAACGGCTCCTATTAGAGTATAATATATAGTTAGATATGGTTTCTGTTATGGAGTTAGTTACTCTAGTA ATTAGCTTAGC
CDS sequence (LotjaGi3g1v0334200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGTTTCAGCAGCAGCAATATCACTGGTTACTCCAACTCTTAATTCATCTTCTGATTTCTCTCGGCGTTCAGCAAA TTATCATCCCAGCATTTGGGGAGATCGTTTTATTCAATATATTGAGGAGCCTACGGAAGTCGATGAAACTATCACGAACA AAATTATAGTACTAAAAGAAGAAGTGAGAAAGATGCTAGTGTTTGTGAATGAAAAGGCTATAAAACCCTTGAGAGAATCT AACTTGATTGATTCAATTCAACGACTGGGATTATGCCATCATTTTGAGAATGAGATAGGAGAAGTATTGCAACATATTCA CAATAACTATGTTGAAAATGGTAAAATAACTCTCGATGAAGACCTACATGCTCTTGCTCTTGTCTTTAGGTTGCTGAGAC AACAAGGATATCATATTTCACCCGATGTGTTTAAGAAGTTCAAGAATGAGCAAGGGAACTTCAGTGAAACACTTGTTACT GACGTTGAGGGAATGCTTAGCTTGTACGAAGCTTCACATCTCAAGATTCATGGGGAAGAGATATTAGATGAAGCTCTTGC TTTCACTTCCTCAAACCTTGAGTTCATCACAACCAAATTGAGTCCCTCTCTTGTCACAAAAGTGAGTTATAGCTTAAAGC GTCCATTTCACAAGAACTTGCCTAGGCTAGTGGCAGCGCATTACATTTCGACGTATAAGGAAGACCCTTCCCATGATGCA ACTCTACTATTATTTGCCAAATTGGATTTTAACAAGCTCCAAAAACTACATCAGAAGGAAGTTGGGGTTATATCAAAGTG GTGGAAAGGTTTGGATTTTGCAACCAAATTGCCCTTTGCCCGCAATAGGATAATAGAAATTTACTTCTGGATATTGGGAG TGTATTTCGAGCCCAAGTACTCGTTCGCTAGAAGGCTAATGACCAAGATGCTTTCTCTGACTTCAGCAATTGATGACATA TATGATGTTTTTGGTACAATGGAAGAGTTACAACTTTTCACGGAAGCTATCGAAAGGTGGGATATAAGTTGCATGGATTT CCTACCAGAATACATGAAGTTTTGCTACAAAGCCCTCCTGGATGTTTATGAAGAAATGGAGCAGGAGATGTCCAAAGAAG GAAGAGAGTTTAGTGTAATCTATGCGAAAAATGAAATGAAAAGGGTGGTCCAAGCCTACTATGCTGAAGCGAAATGGTTC AATAGCAATTATACACCAACAATGGAAGAGTATATGGGAGTTGCAAAGGTAACTTCCGCTTACCGTATGATTGCTACAAC ATCCTTCGTTGGGATGGGATCTATTGCTACAAAACAGGTCTTCCAATGGGTAACCAATGACCCTAAAATTGTTAATGCAT CAACAATTATTTGCAGACTCATGGATGATATTGTTTCCAATGAGTTGGAGCAGAAGAGAGGGCATGTGGCCTCTGCTATT GAGTGCTACATGAAACAACATGGTGTCTCAAAAGAAGATGCCATTAAGGAGCTTTCACTACAAGTGACAAATGCTTGGAA GGATATCAATGAGGAACTCCTTGACCCTACTGAAGTTCCAAAGCCTCTACTTATGCGTGTTCTCAACTTGTCACGTGTAA TTGATGTTCTTTACAAAGATTCAGATGGTTACACTCACTCTGGAGAATCAACAAAGAAAATTATTGAAGCTCTTCTCCTT AATCCAATATGA
Protein sequence (LotjaGi3g1v0334200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSVSAAAISLVTPTLNSSSDFSRRSANYHPSIWGDRFIQYIEEPTEVDETITNKIIVLKEEVRKMLVFVNEKAIKPLRES NLIDSIQRLGLCHHFENEIGEVLQHIHNNYVENGKITLDEDLHALALVFRLLRQQGYHISPDVFKKFKNEQGNFSETLVT DVEGMLSLYEASHLKIHGEEILDEALAFTSSNLEFITTKLSPSLVTKVSYSLKRPFHKNLPRLVAAHYISTYKEDPSHDA TLLLFAKLDFNKLQKLHQKEVGVISKWWKGLDFATKLPFARNRIIEIYFWILGVYFEPKYSFARRLMTKMLSLTSAIDDI YDVFGTMEELQLFTEAIERWDISCMDFLPEYMKFCYKALLDVYEEMEQEMSKEGREFSVIYAKNEMKRVVQAYYAEAKWF NSNYTPTMEEYMGVAKVTSAYRMIATTSFVGMGSIATKQVFQWVTNDPKIVNASTIICRLMDDIVSNELEQKRGHVASAI ECYMKQHGVSKEDAIKELSLQVTNAWKDINEELLDPTEVPKPLLMRVLNLSRVIDVLYKDSDGYTHSGESTKKIIEALLL NPI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 1 | 17 | 17 | - | – | |
| Phobius | 3 | 12 | 10 | - | – | |
| PANTHER | 11 | 563 | 553 | 2.8E-213 | – | |
| PANTHER | 11 | 563 | 553 | 2.8E-213 | – | |
| Phobius | 13 | 17 | 5 | - | – | |
| Phobius | 18 | 563 | 546 | - | – | |
| CDD | 23 | 562 | 540 | 0.0 | – | |
| SUPERFAMILY | 29 | 238 | 210 | 7.61E-66 | ||
| Pfam | 32 | 212 | 181 | 3.0E-55 | ||
| Gene3D | 32 | 548 | 517 | 9.8E-207 | ||
| Gene3D | 73 | 237 | 165 | 9.8E-207 | ||
| SUPERFAMILY | 238 | 563 | 326 | 8.06E-115 | ||
| SFLD | 240 | 563 | 324 | 0.0 | – | |
| SFLD | 240 | 563 | 324 | 0.0 | ||
| Pfam | 243 | 508 | 266 | 1.2E-109 | ||
| Coils | 356 | 376 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Magnesium ion binding | Interacting selectively and non-covalently with magnesium (Mg) ions. | ||
| Molecular function | Terpene synthase activity | Catalysis of the formation of cyclic terpenes through the cyclization of linear terpenes (e.g. isopentenyl-PP, geranyl-PP, farnesyl-PP and geranylgeranyl-PP) containing varying numbers of isoprene units. | ||
| Molecular function | Lyase activity | Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. |
Expression pattern of LotjaGi3g1v0334200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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