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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0339600 |
| Transcript ID | LotjaGi3g1v0339600.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transporter-related family protein; TAIR: AT3G13050.1 Major facilitator superfamily protein; Swiss-Prot: sp|Q940M4|OCT7_ARATH Organic cation/carnitine transporter 7; TrEMBL-Plants: tr|A0A151SGI1|A0A151SGI1_CAJCA Putative transporter ZK637.1 family; Found in the gene: LotjaGi3g1v0339600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:71398295..71403753) extracted from Lotus japonicus Gifu genome v1.2.
TTTCTACGATCTGATTCTTTATCTCATTTTGTGAATATAGACGGGGGTTGAAGGCCCAAGCTACACTGTAGATGATGCTC TTCTGGCTTTGGGTTTTGGGAATTTCCAGATACTCGTGCTTGGTTATGCTGGCATTGGTTGGATTTCAGAAGCAATGGAG ATGATGATGCTCTCTTTTGTTGGGCCTGCAGTGCAAACAGCATGGGGTCTTTCCTCTCATGAAGAGAGCTTCATAACCAG TGTGGTTTTTGGTGGCATGTTGATTGGGGCATACTCTTGGGGCATTGTTTCTGATAAACATGGAAGGAGGTAGGTTTCTC TTTTTCATCTGCTTTACTATCTTTTGCATTTTTAGTGGCCTGCCTATCAAATTTAGAACTAGCTATGTCCTGTTTGAAAT CTTCTAATCAAGTTTGTCGAGATCCCACATTGACTAGAGATAGATAAGGTCAGAGTAGAGCTTACAAAGAATTATAACTA AATTCAAGAGATTTGTATGTTTGGATACCTGTTGAGTGCAACATGACTGAATTTTCGTCTCATTCCATAAGTAGAGTTTA GTTACCTTTTTGTCTCGAAGTGAGTGCTCGGTGCAAACGAGTATTCTAACATAGTAGCTTATATTATCATGTTTAGTTCA AAATATAGTAAAGTGGTCCTAAGCATGCTATTTTAGGGATGGTGCCAGGCTATGATGAGAATCTGTTGTGTTGTAGCACC AAAAACTTAAAAAAGAAAAAACATAACATCACACGCAAATTGTCAAAATCAGCAACTAATTAACCAAAAAGAATGTGTAG ATCTCAATTTATCATAATTCTTATTGTGCTTCATTTATATTGCATTTCTACTTTGTTTCAGGTAAGTGCCATTTTTTTTT CTTGAAATAGTTGAATGTAAAATATTCCCTTTTAAGAGAGAAAAAACTACAGCTAGGTGGGGGTTAGGATATTCTTCAAG ACAAAGAAATTGAATGGGTGACTAAAATTAGTCTTGTTTCAATTTCAGTACTTAATTTTCAAGTACAGATATCATAATGA ACTCATTCAATATTATCTGCATGTTTTTTCTTTGACTTACTTCAATAATTCAGGAAAGGATTCCTTATCACAGCAACAGT TACTGCTATAGCTGGATTTCTGAGTGCATTTGCTCCTAACTATATATTATTAATTGTCCTTCGTTCAGTGGTTGGTATTG GTTTGGGAGGTGGCCCTGTATTATCTTCTTGGTTTCTTGAGTTTGTTCCTGCCCCCAATAGAGGTACCTGGATGGTTGTC TTTTCAGGATTTTGGACTGTTGGTACAATTTTTGAGGCATCACTTGCATGGGTAAATTTTGTTCATTTCCTTTCAAGTTT TAGTTTCTCACCAATTACAATGTCAATTGTGTTATAACAATTTGATGTCTTGCTATATGTATCAGCCCTTTCCCTCTTTT GTTCCAATGGTTTTAGAAGATGATGAGGCTGTATTTTTTTGTTCCCCCCAAACAGGGAAAACAGGCAGTCACCTATGTTT ATGTTTCTTTCCTTGGTTTCAGTTGTCCATGAAATTGGATAATCAGTTTCACCCTCAAATGGTCCATGGATCGAGACACA AATATCAAATTCTTTTATTTGATATTAAATGATTCAGATCTCAGCTGTTTTGTCATTAAACTCCTATATATAACTTCAAC TTCGTTTCTTTATCATCAGAGCTCTGAAATTTTAAATTTGCTTCAATCCTACTTTTTAAAATTTTGAATTTACCCAAGAT TCATTCAAGAACTAAGCAACCAACAAGTAGTTACCTTAGGACTTATCACTTAAGTAATTCATTCATTTCAAAAAAATAAA ACTTAGGTAATGCATAGGGTGTCAAAAATTGCCATTATTCTTTCTATAACTTAAATACAAACCCCAAAAACTTGTGTACT TTCATCATTTAGCGCAGGAAAGCATTAATGCTTTACCTGTCATTATTAAGGAATTATCTTAAGTTGTACTAATCTAGCAA ATGTTCTGTCAAATTTATTAAGTCAGATACGATAGTGGTAGTTTCTAACTTTCTATTCCCATTGCATGACTAACAGATCA TTGAGCTGATGGGTTCACCTAATGAAATGCTCTTTGCAGATTGTGATGCCAAGACTGGGTTGGAGATGGCTTCTTGCTCT ATCTTCGCTTCCCACATCTTTCCTCCTTCTATTCTACAAAATGACGCCTGAGTCACCGAGATACCTGTGCTTGAAAGGTA GAACAGCTGATGCAATCAATATTTTGGAGAAAATAGCAAGAGTAAATGGAAGAAAACTTCCTTCTGGTACCCTTGTTTCT GACCATCAAATTGAGCTACACGAAATCGATAGCTCCTCAGAGGACATAGGTTTACTCTCGCCAAGAAAAAGTGAAGCTGA ATCTCCTAAAGGAATTGTTTCCAACTTAGGCGGCATCTCATCACTGAAGATGCTTCTCTCACCAAATTTGGCGAGGTCAA CCCTTCTATTATGGGCAGTGTTTTTTGGTAATGCTTTTTCATATTATGGCCTTGTTTTGTTGACGTCTGAGTTGAATGGA CATAGTAAATGCGTGCCACATGAATTGCAGACAGAGAGTTCCCAGGATATTAGGTACAAAGATGTTTTCATTGCTAGCTT TGCAGGTATGTTTTCTACTGATTCCAAAGTATTTGTTAGACAAATGCAGGGAAGTACATCATGCATGACTGAAACTTAAC TAATTTCTTGCAGAGGTACCTGGGCTCCTCTTGTCAGCTGCAGCAGTAGATAAACTTGGTCGTAAGCTTTCAATGTCAAG CATGTTCTTCATGTGTTGTATTTTCCTGCTCCCATTAGTATTCTATCTTCCTGAAGGCCTTACAACGGGCCTTTTATTTG GAGCTCGCATATGCATCACGGCGACCTTCACAATTGTGTACATTTATGCACCAGAGGTAATGTATTTATTGCAAAATAAT TTTGAATGATCTTGTTGAAACCAAGAGTGTTTGATATAAATGGTACAAACTAATGACACCTATTTATACTGTTGAATACA TTAGTACTATTGTAATACAACTTGTATAATTTCATTCCAATAAGAGTATTAAAATACTGAGGCTCCTAAATCAATAAAAA GAATGCTATTATTTTTAGATTCTTGCTAATGAGTGATATAAGGGTATTAAGGGATGAAGAAATAAATAGTATTGTTTAAA AGTGCAACATTTTCCAATTCTTAATTCCTTAGGACCTTAACCAATATCCACATTCATTAGCATTTGTCTTATTTTAATAC TACCCCTTAATCTGAACCTAAGCTCTCTGCTTGTTACTAATGAGCACTCTTAAAAAACAGTAAATTATGCATAGACTCCT CCTCCTAAAGATTTGTCAAGATGAAAGCAAACTCCATACTTGGCTATAAATAACACCCTACCTCATTCTCTTTTTTCTTA GTTAACTTCAAGTTAAAGAAAAGAAAATGTAAAAGACAAAGCCTTATTAATTATTAGTGAGCTTTATAATACAAGAAAAG TATTTCATGATTGTTGGTGTTACCAGACAACTAGTGCATTTTTCCAGCTGTATAAAACTTAGATGAGTGCAGGTGTGATA AATATTCCTTTGTTACAGAAATATGTCTGCCACCAATTTAAATTAACTGTATAAAGTACAATATTTATTCTCATAAAAGA TAAATCCTTGATGTGGTTTGATACTTGAAAGAGGGTGTAAGAAAATGATACTGATAGGTACCAGCAGTGAATGAGCAGAA AATTTGTTATTATTCAGGAGTAGCAATGAACTGCAATTACTGGTTGTTGGAGAGAACCAGCACTCTCCCTAAAATTCCCT TATAGCAAACCAGATACCATCTTATATCTCTCTCCCTCTTATTTATAGACTATAGTATTTCCTTACTATCTCTAACTAAC TCAATCACTGGCTAATTGTTACACTGACAGTTAACTGATGCTAACAGACTCATAAAGTGTTATCAAATAGCGGCTGTAGC GGCTGCGACCCGCTAAAGCGTAGCGGATTTTAGGGCCACCGCAATCGCTACGCCGCGACATAGCGGCCAGCGCGAGAAAC GCAATCGCGGCAGCGACGGCCGTAGCGGCACTGGAAGCTGAAGCGGAAATAGCGGATTTTGAGGAATACTGCACGTTTTT TAATTTTTTAGGGTTTTTAAATATGGCAATTCTTGACTATTGGGCCACCGACTGCCTAATTAACTCCCCATTAATTCTTT TTTTCTATATTTATTATTTATGCTTCATCATTAAGAAGAATCACGGCAGAATTGAAAAGGTTTCCAAAATCCTAATTCTC CTTCTCTCATCCTCCTTCTACAAGCCCAATTAACTCCCCATTAATTCGTTTTTGTTGGATTTCCTTTTTCTGTTTCACTG TTTTAAGACTTGTGTTTGGTTATGTTGTTTTTAGTCTTTTGACATTTGTTTTGAGCTGGTGGCTGCCTTTAATAATTAAC ATTTGGTTGTTAAAAATGATGATTTTTTTGCAGTTTTTATTGTTATGTGATAAGCTGTTGTTTCTTATGCAGTTTTTATT TGTTCATTTCAAATGTTTCTGCTCTAGTATTGCAATGGATGTCTGATAAGCTGCTGTTTTTTTATAATATTTTACTTATT TTAACCGCTATGTGGTTTCCGCTATTTTCCCGCGACGCTATCCGCTATATGAAATAGCGGATTTTGGCCTCGCCGCAATA GTCCGCGTTCGCGATTTGACAACACTTCATTCCTTTAACTAACTAACTATTCTACTAACTAATTATAACAACTACTGTCT AGTTAGTTACAATAACCACCTCTCCAATTTGGGGGTTTTAGAGGGAAGGGGAGGGGGAGAGAGAGAGCGTAAGCCCTCCC CTTAATTGGAAGTTTAAAATTCCACAAAACCCCCCAATTTGAGGGAACTTCACAAAATGACTAAATGAGGTCTAGGAGAG GGGTCTTGGGAGGGATTTCAAAAATTCCCCAAACCCGTCCCCTCTTTTAAAGTTCTGTCAAACAAGGGGAGGCCTTCTCA TAAGCCTCCTCTTTCACTTCCCTCCCTCCAAAATCTAACTTGCAAACAAAGCCTTAAGAGGCCTAATTTTTATCAGATAC ATATAGCTGAAGATGGTTTCACAATTTTATTTTAGCCTAGTCCTTCTTTATACATGACTGAATTTTAATATTTTGAAATG AATATGAACTGCAGATGTACCCAACATCAGTCAGAACAACTGGTGTGGGAATCGCAAGCTCGGTGGGAAGGATTGGTGGA ATGTTATGTCCTTTGGTAGCAGTTGGTTTAGTACATAGCTGTCATCAAACTGCAGCTGTTCTTCTATTTGAATTTGTAGC TCTAGTTTCAGGAATATGTGTTATGCTCTTTCCGGTTGAGACCATGGGCCAAGAACTACGAGATAGTGTATCAAGCTGAA AGAGACCGGCAACACATGA
CDS sequence (LotjaGi3g1v0339600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGATGATGATGCTCTCTTTTGTTGGGCCTGCAGTGCAAACAGCATGGGGTCTTTCCTCTCATGAAGAGAGCTTCAT AACCAGTGTGGTTTTTGGTGGCATGTTGATTGGGGCATACTCTTGGGGCATTGTTTCTGATAAACATGGAAGGAGGAAAG GATTCCTTATCACAGCAACAGTTACTGCTATAGCTGGATTTCTGAGTGCATTTGCTCCTAACTATATATTATTAATTGTC CTTCGTTCAGTGGTTGGTATTGGTTTGGGAGGTGGCCCTGTATTATCTTCTTGGTTTCTTGAGTTTGTTCCTGCCCCCAA TAGAGGTACCTGGATGGTTGTCTTTTCAGGATTTTGGACTGTTGGTACAATTTTTGAGGCATCACTTGCATGGATTGTGA TGCCAAGACTGGGTTGGAGATGGCTTCTTGCTCTATCTTCGCTTCCCACATCTTTCCTCCTTCTATTCTACAAAATGACG CCTGAGTCACCGAGATACCTGTGCTTGAAAGGTAGAACAGCTGATGCAATCAATATTTTGGAGAAAATAGCAAGAGTAAA TGGAAGAAAACTTCCTTCTGGTACCCTTGTTTCTGACCATCAAATTGAGCTACACGAAATCGATAGCTCCTCAGAGGACA TAGGTTTACTCTCGCCAAGAAAAAGTGAAGCTGAATCTCCTAAAGGAATTGTTTCCAACTTAGGCGGCATCTCATCACTG AAGATGCTTCTCTCACCAAATTTGGCGAGGTCAACCCTTCTATTATGGGCAGTGTTTTTTGGTAATGCTTTTTCATATTA TGGCCTTGTTTTGTTGACGTCTGAGTTGAATGGACATAGTAAATGCGTGCCACATGAATTGCAGACAGAGAGTTCCCAGG ATATTAGGTACAAAGATGTTTTCATTGCTAGCTTTGCAGAGGTACCTGGGCTCCTCTTGTCAGCTGCAGCAGTAGATAAA CTTGGTCGTAAGCTTTCAATGTCAAGCATGTTCTTCATGTGTTGTATTTTCCTGCTCCCATTAGTATTCTATCTTCCTGA AGGCCTTACAACGGGCCTTTTATTTGGAGCTCGCATATGCATCACGGCGACCTTCACAATTGTGTACATTTATGCACCAG AGATGTACCCAACATCAGTCAGAACAACTGGTGTGGGAATCGCAAGCTCGGTGGGAAGGATTGGTGGAATGTTATGTCCT TTGGTAGCAGTTGGTTTAGTACATAGCTGTCATCAAACTGCAGCTGTTCTTCTATTTGAATTTGTAGCTCTAGTTTCAGG AATATGTGTTATGCTCTTTCCGGTTGAGACCATGGGCCAAGAACTACGAGATAGTGTATCAAGCTGA
Protein sequence (LotjaGi3g1v0339600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEMMMLSFVGPAVQTAWGLSSHEESFITSVVFGGMLIGAYSWGIVSDKHGRRKGFLITATVTAIAGFLSAFAPNYILLIV LRSVVGIGLGGGPVLSSWFLEFVPAPNRGTWMVVFSGFWTVGTIFEASLAWIVMPRLGWRWLLALSSLPTSFLLLFYKMT PESPRYLCLKGRTADAINILEKIARVNGRKLPSGTLVSDHQIELHEIDSSSEDIGLLSPRKSEAESPKGIVSNLGGISSL KMLLSPNLARSTLLLWAVFFGNAFSYYGLVLLTSELNGHSKCVPHELQTESSQDIRYKDVFIASFAEVPGLLLSAAAVDK LGRKLSMSSMFFMCCIFLLPLVFYLPEGLTTGLLFGARICITATFTIVYIYAPEMYPTSVRTTGVGIASSVGRIGGMLCP LVAVGLVHSCHQTAAVLLFEFVALVSGICVMLFPVETMGQELRDSVSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 447 | 447 | 7.1E-194 | – | |
| Phobius | 1 | 18 | 18 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 1 | 447 | 447 | 7.1E-194 | – | |
| CDD | 1 | 433 | 433 | 1.34288E-133 | – | |
| Gene3D | 1 | 446 | 446 | 2.4E-78 | – | |
| ProSiteProfiles | 1 | 438 | 438 | 35.559 | ||
| SUPERFAMILY | 3 | 443 | 441 | 1.7E-59 | ||
| Phobius | 6 | 13 | 8 | - | – | |
| Phobius | 14 | 18 | 5 | - | – | |
| Phobius | 19 | 27 | 9 | - | – | |
| Pfam | 22 | 187 | 166 | 1.9E-31 | ||
| TMHMM | 26 | 45 | 20 | - | – | |
| Phobius | 28 | 45 | 18 | - | – | |
| Phobius | 46 | 53 | 8 | - | – | |
| TMHMM | 54 | 73 | 20 | - | – | |
| Phobius | 54 | 73 | 20 | - | – | |
| Phobius | 74 | 78 | 5 | - | – | |
| TMHMM | 78 | 100 | 23 | - | – | |
| Phobius | 79 | 100 | 22 | - | – | |
| Phobius | 101 | 111 | 11 | - | – | |
| TMHMM | 112 | 134 | 23 | - | – | |
| Phobius | 112 | 133 | 22 | - | – | |
| Phobius | 134 | 138 | 5 | - | – | |
| TMHMM | 138 | 157 | 20 | - | – | |
| Phobius | 139 | 157 | 19 | - | – | |
| Phobius | 158 | 247 | 90 | - | – | |
| Phobius | 248 | 269 | 22 | - | – | |
| TMHMM | 252 | 274 | 23 | - | – | |
| Phobius | 270 | 299 | 30 | - | – | |
| Phobius | 300 | 318 | 19 | - | – | |
| TMHMM | 300 | 318 | 19 | - | – | |
| Pfam | 312 | 442 | 131 | 1.9E-9 | ||
| ProSitePatterns | 314 | 329 | 16 | - | ||
| Phobius | 319 | 329 | 11 | - | – | |
| TMHMM | 325 | 344 | 20 | - | – | |
| Phobius | 330 | 346 | 17 | - | – | |
| Phobius | 347 | 351 | 5 | - | – | |
| TMHMM | 349 | 371 | 23 | - | – | |
| Phobius | 352 | 372 | 21 | - | – | |
| Phobius | 373 | 383 | 11 | - | – | |
| Phobius | 384 | 407 | 24 | - | – | |
| TMHMM | 384 | 406 | 23 | - | – | |
| Phobius | 408 | 412 | 5 | - | – | |
| Phobius | 413 | 433 | 21 | - | – | |
| TMHMM | 416 | 435 | 20 | - | – | |
| Phobius | 434 | 448 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi3g1v0339600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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