Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0339600 |
| Transcript ID | LotjaGi3g1v0339600.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transporter-related family protein; TAIR: AT3G13050.1 Major facilitator superfamily protein; Swiss-Prot: sp|Q940M4|OCT7_ARATH Organic cation/carnitine transporter 7; TrEMBL-Plants: tr|A0A151SGI1|A0A151SGI1_CAJCA Putative transporter ZK637.1 family; Found in the gene: LotjaGi3g1v0339600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:71399190..71403733) extracted from Lotus japonicus Gifu genome v1.2.
TGTAAAATATTCCCTTTTAAGAGAGAAAAAACTACAGCTAGGTGGGGGTTAGGATATTCTTCAAGACAAAGAAATTGAAT GGGTGACTAAAATTAGTCTTGTTTCAATTTCAGTACTTAATTTTCAAGTACAGATATCATAATGAACTCATTCAATATTA TCTGCATGTTTTTTCTTTGACTTACTTCAATAATTCAGGAAAGGATTCCTTATCACAGCAACAGTTACTGCTATAGCTGG ATTTCTGAGTGCATTTGCTCCTAACTATATATTATTAATTGTCCTTCGTTCAGTGGTTGGTATTGGTTTGGGAGGTGGCC CTGTATTATCTTCTTGGTTTCTTGAGTTTGTTCCTGCCCCCAATAGAGGTACCTGGATGGTTGTCTTTTCAGGATTTTGG ACTGTTGGTACAATTTTTGAGGCATCACTTGCATGGGTAAATTTTGTTCATTTCCTTTCAAGTTTTAGTTTCTCACCAAT TACAATGTCAATTGTGTTATAACAATTTGATGTCTTGCTATATGTATCAGCCCTTTCCCTCTTTTGTTCCAATGGTTTTA GAAGATGATGAGGCTGTATTTTTTTGTTCCCCCCAAACAGGGAAAACAGGCAGTCACCTATGTTTATGTTTCTTTCCTTG GTTTCAGTTGTCCATGAAATTGGATAATCAGTTTCACCCTCAAATGGTCCATGGATCGAGACACAAATATCAAATTCTTT TATTTGATATTAAATGATTCAGATCTCAGCTGTTTTGTCATTAAACTCCTATATATAACTTCAACTTCGTTTCTTTATCA TCAGAGCTCTGAAATTTTAAATTTGCTTCAATCCTACTTTTTAAAATTTTGAATTTACCCAAGATTCATTCAAGAACTAA GCAACCAACAAGTAGTTACCTTAGGACTTATCACTTAAGTAATTCATTCATTTCAAAAAAATAAAACTTAGGTAATGCAT AGGGTGTCAAAAATTGCCATTATTCTTTCTATAACTTAAATACAAACCCCAAAAACTTGTGTACTTTCATCATTTAGCGC AGGAAAGCATTAATGCTTTACCTGTCATTATTAAGGAATTATCTTAAGTTGTACTAATCTAGCAAATGTTCTGTCAAATT TATTAAGTCAGATACGATAGTGGTAGTTTCTAACTTTCTATTCCCATTGCATGACTAACAGATCATTGAGCTGATGGGTT CACCTAATGAAATGCTCTTTGCAGATTGTGATGCCAAGACTGGGTTGGAGATGGCTTCTTGCTCTATCTTCGCTTCCCAC ATCTTTCCTCCTTCTATTCTACAAAATGACGCCTGAGTCACCGAGATACCTGTGCTTGAAAGGTAGAACAGCTGATGCAA TCAATATTTTGGAGAAAATAGCAAGAGTAAATGGAAGAAAACTTCCTTCTGGTACCCTTGTTTCTGACCATCAAATTGAG CTACACGAAATCGATAGCTCCTCAGAGGACATAGGTTTACTCTCGCCAAGAAAAAGTGAAGCTGAATCTCCTAAAGGAAT TGTTTCCAACTTAGGCGGCATCTCATCACTGAAGATGCTTCTCTCACCAAATTTGGCGAGGTCAACCCTTCTATTATGGG CAGTGTTTTTTGGTAATGCTTTTTCATATTATGGCCTTGTTTTGTTGACGTCTGAGTTGAATGGACATAGTAAATGCGTG CCACATGAATTGCAGACAGAGAGTTCCCAGGATATTAGGTACAAAGATGTTTTCATTGCTAGCTTTGCAGGTATGTTTTC TACTGATTCCAAAGTATTTGTTAGACAAATGCAGGGAAGTACATCATGCATGACTGAAACTTAACTAATTTCTTGCAGAG GTACCTGGGCTCCTCTTGTCAGCTGCAGCAGTAGATAAACTTGGTCGTAAGCTTTCAATGTCAAGCATGTTCTTCATGTG TTGTATTTTCCTGCTCCCATTAGTATTCTATCTTCCTGAAGGCCTTACAACGGGCCTTTTATTTGGAGCTCGCATATGCA TCACGGCGACCTTCACAATTGTGTACATTTATGCACCAGAGGTAATGTATTTATTGCAAAATAATTTTGAATGATCTTGT TGAAACCAAGAGTGTTTGATATAAATGGTACAAACTAATGACACCTATTTATACTGTTGAATACATTAGTACTATTGTAA TACAACTTGTATAATTTCATTCCAATAAGAGTATTAAAATACTGAGGCTCCTAAATCAATAAAAAGAATGCTATTATTTT TAGATTCTTGCTAATGAGTGATATAAGGGTATTAAGGGATGAAGAAATAAATAGTATTGTTTAAAAGTGCAACATTTTCC AATTCTTAATTCCTTAGGACCTTAACCAATATCCACATTCATTAGCATTTGTCTTATTTTAATACTACCCCTTAATCTGA ACCTAAGCTCTCTGCTTGTTACTAATGAGCACTCTTAAAAAACAGTAAATTATGCATAGACTCCTCCTCCTAAAGATTTG TCAAGATGAAAGCAAACTCCATACTTGGCTATAAATAACACCCTACCTCATTCTCTTTTTTCTTAGTTAACTTCAAGTTA AAGAAAAGAAAATGTAAAAGACAAAGCCTTATTAATTATTAGTGAGCTTTATAATACAAGAAAAGTATTTCATGATTGTT GGTGTTACCAGACAACTAGTGCATTTTTCCAGCTGTATAAAACTTAGATGAGTGCAGGTGTGATAAATATTCCTTTGTTA CAGAAATATGTCTGCCACCAATTTAAATTAACTGTATAAAGTACAATATTTATTCTCATAAAAGATAAATCCTTGATGTG GTTTGATACTTGAAAGAGGGTGTAAGAAAATGATACTGATAGGTACCAGCAGTGAATGAGCAGAAAATTTGTTATTATTC AGGAGTAGCAATGAACTGCAATTACTGGTTGTTGGAGAGAACCAGCACTCTCCCTAAAATTCCCTTATAGCAAACCAGAT ACCATCTTATATCTCTCTCCCTCTTATTTATAGACTATAGTATTTCCTTACTATCTCTAACTAACTCAATCACTGGCTAA TTGTTACACTGACAGTTAACTGATGCTAACAGACTCATAAAGTGTTATCAAATAGCGGCTGTAGCGGCTGCGACCCGCTA AAGCGTAGCGGATTTTAGGGCCACCGCAATCGCTACGCCGCGACATAGCGGCCAGCGCGAGAAACGCAATCGCGGCAGCG ACGGCCGTAGCGGCACTGGAAGCTGAAGCGGAAATAGCGGATTTTGAGGAATACTGCACGTTTTTTAATTTTTTAGGGTT TTTAAATATGGCAATTCTTGACTATTGGGCCACCGACTGCCTAATTAACTCCCCATTAATTCTTTTTTTCTATATTTATT ATTTATGCTTCATCATTAAGAAGAATCACGGCAGAATTGAAAAGGTTTCCAAAATCCTAATTCTCCTTCTCTCATCCTCC TTCTACAAGCCCAATTAACTCCCCATTAATTCGTTTTTGTTGGATTTCCTTTTTCTGTTTCACTGTTTTAAGACTTGTGT TTGGTTATGTTGTTTTTAGTCTTTTGACATTTGTTTTGAGCTGGTGGCTGCCTTTAATAATTAACATTTGGTTGTTAAAA ATGATGATTTTTTTGCAGTTTTTATTGTTATGTGATAAGCTGTTGTTTCTTATGCAGTTTTTATTTGTTCATTTCAAATG TTTCTGCTCTAGTATTGCAATGGATGTCTGATAAGCTGCTGTTTTTTTATAATATTTTACTTATTTTAACCGCTATGTGG TTTCCGCTATTTTCCCGCGACGCTATCCGCTATATGAAATAGCGGATTTTGGCCTCGCCGCAATAGTCCGCGTTCGCGAT TTGACAACACTTCATTCCTTTAACTAACTAACTATTCTACTAACTAATTATAACAACTACTGTCTAGTTAGTTACAATAA CCACCTCTCCAATTTGGGGGTTTTAGAGGGAAGGGGAGGGGGAGAGAGAGAGCGTAAGCCCTCCCCTTAATTGGAAGTTT AAAATTCCACAAAACCCCCCAATTTGAGGGAACTTCACAAAATGACTAAATGAGGTCTAGGAGAGGGGTCTTGGGAGGGA TTTCAAAAATTCCCCAAACCCGTCCCCTCTTTTAAAGTTCTGTCAAACAAGGGGAGGCCTTCTCATAAGCCTCCTCTTTC ACTTCCCTCCCTCCAAAATCTAACTTGCAAACAAAGCCTTAAGAGGCCTAATTTTTATCAGATACATATAGCTGAAGATG GTTTCACAATTTTATTTTAGCCTAGTCCTTCTTTATACATGACTGAATTTTAATATTTTGAAATGAATATGAACTGCAGA TGTACCCAACATCAGTCAGAACAACTGGTGTGGGAATCGCAAGCTCGGTGGGAAGGATTGGTGGAATGTTATGTCCTTTG GTAGCAGTTGGTTTAGTACATAGCTGTCATCAAACTGCAGCTGTTCTTCTATTTGAATTTGTAGCTCTAGTTTCAGGAAT ATGTGTTATGCTCTTTCCGGTTGAGACCATGGGCCAAGAACTACGAGATAGTGTATCAAGCTGA
CDS sequence (LotjaGi3g1v0339600.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGTCTTTTCAGGATTTTGGACTGTTGGTACAATTTTTGAGGCATCACTTGCATGGATTGTGATGCCAAGACTGGG TTGGAGATGGCTTCTTGCTCTATCTTCGCTTCCCACATCTTTCCTCCTTCTATTCTACAAAATGACGCCTGAGTCACCGA GATACCTGTGCTTGAAAGGTAGAACAGCTGATGCAATCAATATTTTGGAGAAAATAGCAAGAGTAAATGGAAGAAAACTT CCTTCTGGTACCCTTGTTTCTGACCATCAAATTGAGCTACACGAAATCGATAGCTCCTCAGAGGACATAGGTTTACTCTC GCCAAGAAAAAGTGAAGCTGAATCTCCTAAAGGAATTGTTTCCAACTTAGGCGGCATCTCATCACTGAAGATGCTTCTCT CACCAAATTTGGCGAGGTCAACCCTTCTATTATGGGCAGTGTTTTTTGGTAATGCTTTTTCATATTATGGCCTTGTTTTG TTGACGTCTGAGTTGAATGGACATAGTAAATGCGTGCCACATGAATTGCAGACAGAGAGTTCCCAGGATATTAGGTACAA AGATGTTTTCATTGCTAGCTTTGCAGAGGTACCTGGGCTCCTCTTGTCAGCTGCAGCAGTAGATAAACTTGGTCGTAAGC TTTCAATGTCAAGCATGTTCTTCATGTGTTGTATTTTCCTGCTCCCATTAGTATTCTATCTTCCTGAAGGCCTTACAACG GGCCTTTTATTTGGAGCTCGCATATGCATCACGGCGACCTTCACAATTGTGTACATTTATGCACCAGAGATGTACCCAAC ATCAGTCAGAACAACTGGTGTGGGAATCGCAAGCTCGGTGGGAAGGATTGGTGGAATGTTATGTCCTTTGGTAGCAGTTG GTTTAGTACATAGCTGTCATCAAACTGCAGCTGTTCTTCTATTTGAATTTGTAGCTCTAGTTTCAGGAATATGTGTTATG CTCTTTCCGGTTGAGACCATGGGCCAAGAACTACGAGATAGTGTATCAAGCTGA
Protein sequence (LotjaGi3g1v0339600.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVVFSGFWTVGTIFEASLAWIVMPRLGWRWLLALSSLPTSFLLLFYKMTPESPRYLCLKGRTADAINILEKIARVNGRKL PSGTLVSDHQIELHEIDSSSEDIGLLSPRKSEAESPKGIVSNLGGISSLKMLLSPNLARSTLLLWAVFFGNAFSYYGLVL LTSELNGHSKCVPHELQTESSQDIRYKDVFIASFAEVPGLLLSAAAVDKLGRKLSMSSMFFMCCIFLLPLVFYLPEGLTT GLLFGARICITATFTIVYIYAPEMYPTSVRTTGVGIASSVGRIGGMLCPLVAVGLVHSCHQTAAVLLFEFVALVSGICVM LFPVETMGQELRDSVSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 336 | 336 | 2.0E-136 | – | |
| Gene3D | 1 | 335 | 335 | 1.4E-50 | – | |
| CDD | 1 | 322 | 322 | 6.4703E-79 | – | |
| ProSiteProfiles | 1 | 327 | 327 | 15.27 | ||
| Phobius | 1 | 2 | 2 | - | – | |
| PANTHER | 1 | 336 | 336 | 2.0E-136 | – | |
| Phobius | 1 | 19 | 19 | - | – | |
| SUPERFAMILY | 2 | 332 | 331 | 4.97E-34 | ||
| TMHMM | 2 | 24 | 23 | - | – | |
| Phobius | 3 | 14 | 12 | - | – | |
| Pfam | 5 | 76 | 72 | 2.0E-10 | ||
| Phobius | 15 | 19 | 5 | - | – | |
| Phobius | 20 | 28 | 9 | - | – | |
| TMHMM | 28 | 45 | 18 | - | – | |
| Phobius | 29 | 46 | 18 | - | – | |
| Phobius | 47 | 136 | 90 | - | – | |
| Phobius | 137 | 158 | 22 | - | – | |
| TMHMM | 141 | 163 | 23 | - | – | |
| Phobius | 159 | 188 | 30 | - | – | |
| Phobius | 189 | 207 | 19 | - | – | |
| TMHMM | 189 | 207 | 19 | - | – | |
| Pfam | 200 | 331 | 132 | 9.0E-10 | ||
| ProSitePatterns | 203 | 218 | 16 | - | ||
| Phobius | 208 | 218 | 11 | - | – | |
| TMHMM | 214 | 233 | 20 | - | – | |
| Phobius | 219 | 235 | 17 | - | – | |
| Phobius | 236 | 240 | 5 | - | – | |
| TMHMM | 238 | 260 | 23 | - | – | |
| Phobius | 241 | 261 | 21 | - | – | |
| Phobius | 262 | 272 | 11 | - | – | |
| TMHMM | 273 | 295 | 23 | - | – | |
| Phobius | 273 | 296 | 24 | - | – | |
| Phobius | 297 | 301 | 5 | - | – | |
| Phobius | 302 | 322 | 21 | - | – | |
| TMHMM | 305 | 324 | 20 | - | – | |
| Phobius | 323 | 337 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi3g1v0339600.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…