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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0340100 |
| Transcript ID | LotjaGi3g1v0340100.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polyubiquitin; TAIR: AT4G02890.3 Ubiquitin family protein; Swiss-Prot: sp|P0CG84|UBI4P_NICSY Polyubiquitin; TrEMBL-Plants: tr|P93501|P93501_PHAVU Ubiquitin-like protein; Found in the gene: LotjaGi3g1v0340100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:71485240..71486456) extracted from Lotus japonicus Gifu genome v1.2.
AGTTTTGATGGGTTAGGGTTTATCTTTTATCTATCTGTTGTTCCCATATTTCAATTTCAATCGTACAGTTGTTGTCAGTT TCTTTTACTCTTGTTAATTTGTGTAGATGATTCTTTCGGATTCATCTAGTTTTGTTTCTGTTTTTGTGATCTATTTGTAT GTTTGAATCCTTTCCCCAAATTTTAGGGTTTAATTTTTATCGTCTCTAGATTAGGGTTTATATTTGATCTCCCTGTTGTC TCCACAAGTTGCTGTTTTTTTTTTTTTTTTTTGATGTTTTAGTTTTTTGATGGGAACAGATGCAGATCTTTGTGAAAACT CTGACCGGCAAGACCATCACCTTAGAGGTGGAGAGTTCAGATACCATTGATAATGTAAAAGCCAAGATCCAGGATAAGGA AGGGATCCCACCTGATCAGCAAAGGCTTATCTTTGCTGGCAAGCAGTTAGAGGATGGTCGCACCCTTGCTGACTACAACA TCCAGAAGGAGTCCACCCTTCACCTTGTTCTCCGCCTCAGGGGTGGTATGCAGATCTTTGTCAAGACCTTGACAGGGAAA ACCATCACCCTCGAGGTCGAATCCTCAGACACCATTGATAATGTCAAGGCCAAGATCCAGGACAAAGAGGGTATACCACC CGACCAGCAGAGGCTTATTTTTGCTGGGAAACAACTTGAGGATGGGAGGACCTTGGCTGATTACAACATCCAGAAGGAGT CCACCCTTCATTTGGTTCTTCGATTGAGAGGCGGCATGCAAATTTTTGTGAAGACCTTGACAGGAAAGACAATAACGTTG GAGGTGGAAAGCTCAGATACTATTGATAATGTGAAAGCCAAGATTCAGGACAAGGAGGGCATCCCGCCAGACCAGCAGAG GCTCATCTTTGCTGGAAAACAGCTTGAAGATGGAAGAACCCTTGCTGATTATAACATTCAGAAGGAGTCTACTCTGCATT TGGTGTTGCGGCTTCGTGGAGGCATGCAAATTTTTGTCAAGACCTTAACAGGAAAGACCATTACCTTAGAGGTGGAAAGC TCTGATACGATTGATAATGTGAAAGCAAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAGCAGCGACTTATTTTCGC TGGTAAGCAGTTGGAAGATGGACGTACACTGGCAGATTACAATATTCAAAAGGAATCCACTCTGCATCTTGTCCTTCGAC TTCGTGGTGGCTTCTAA
CDS sequence (LotjaGi3g1v0340100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGATCTTTGTGAAAACTCTGACCGGCAAGACCATCACCTTAGAGGTGGAGAGTTCAGATACCATTGATAATGTAAA AGCCAAGATCCAGGATAAGGAAGGGATCCCACCTGATCAGCAAAGGCTTATCTTTGCTGGCAAGCAGTTAGAGGATGGTC GCACCCTTGCTGACTACAACATCCAGAAGGAGTCCACCCTTCACCTTGTTCTCCGCCTCAGGGGTGGTATGCAGATCTTT GTCAAGACCTTGACAGGGAAAACCATCACCCTCGAGGTCGAATCCTCAGACACCATTGATAATGTCAAGGCCAAGATCCA GGACAAAGAGGGTATACCACCCGACCAGCAGAGGCTTATTTTTGCTGGGAAACAACTTGAGGATGGGAGGACCTTGGCTG ATTACAACATCCAGAAGGAGTCCACCCTTCATTTGGTTCTTCGATTGAGAGGCGGCATGCAAATTTTTGTGAAGACCTTG ACAGGAAAGACAATAACGTTGGAGGTGGAAAGCTCAGATACTATTGATAATGTGAAAGCCAAGATTCAGGACAAGGAGGG CATCCCGCCAGACCAGCAGAGGCTCATCTTTGCTGGAAAACAGCTTGAAGATGGAAGAACCCTTGCTGATTATAACATTC AGAAGGAGTCTACTCTGCATTTGGTGTTGCGGCTTCGTGGAGGCATGCAAATTTTTGTCAAGACCTTAACAGGAAAGACC ATTACCTTAGAGGTGGAAAGCTCTGATACGATTGATAATGTGAAAGCAAAGATCCAGGACAAGGAGGGTATTCCCCCAGA CCAGCAGCGACTTATTTTCGCTGGTAAGCAGTTGGAAGATGGACGTACACTGGCAGATTACAATATTCAAAAGGAATCCA CTCTGCATCTTGTCCTTCGACTTCGTGGTGGCTTCTAA
Protein sequence (LotjaGi3g1v0340100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTL TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 152 | 152 | 0.0 | – | |
| PANTHER | 1 | 152 | 152 | 0.0 | – | |
| SUPERFAMILY | 1 | 76 | 76 | 1.3E-33 | ||
| SMART | 1 | 72 | 72 | 3.0E-35 | ||
| Gene3D | 1 | 76 | 76 | 2.2E-45 | – | |
| CDD | 1 | 76 | 76 | 8.16203E-49 | – | |
| ProSiteProfiles | 1 | 76 | 76 | 30.452 | ||
| Pfam | 3 | 74 | 72 | 1.2E-33 | ||
| PRINTS | 11 | 31 | 21 | 2.7E-38 | ||
| ProSitePatterns | 27 | 52 | 26 | - | ||
| PRINTS | 32 | 52 | 21 | 2.7E-38 | ||
| PRINTS | 53 | 74 | 22 | 2.7E-38 | ||
| PANTHER | 74 | 227 | 154 | 0.0 | – | |
| PANTHER | 74 | 227 | 154 | 0.0 | – | |
| SUPERFAMILY | 76 | 152 | 77 | 5.49E-34 | ||
| SMART | 77 | 148 | 72 | 3.0E-35 | ||
| ProSiteProfiles | 77 | 152 | 76 | 30.452 | ||
| CDD | 77 | 152 | 76 | 8.16203E-49 | – | |
| Gene3D | 77 | 152 | 76 | 1.4E-45 | – | |
| Pfam | 79 | 150 | 72 | 1.2E-33 | ||
| ProSitePatterns | 103 | 128 | 26 | - | ||
| PANTHER | 147 | 304 | 158 | 0.0 | – | |
| PANTHER | 147 | 304 | 158 | 0.0 | – | |
| SUPERFAMILY | 152 | 228 | 77 | 5.28E-34 | ||
| ProSiteProfiles | 153 | 228 | 76 | 30.452 | ||
| Gene3D | 153 | 228 | 76 | 1.4E-45 | – | |
| SMART | 153 | 224 | 72 | 3.0E-35 | ||
| CDD | 153 | 228 | 76 | 8.16203E-49 | – | |
| Pfam | 155 | 226 | 72 | 1.2E-33 | ||
| ProSitePatterns | 179 | 204 | 26 | - | ||
| SUPERFAMILY | 228 | 304 | 77 | 5.69E-34 | ||
| CDD | 229 | 304 | 76 | 8.16203E-49 | – | |
| SMART | 229 | 300 | 72 | 3.0E-35 | ||
| Gene3D | 229 | 305 | 77 | 2.4E-45 | – | |
| ProSiteProfiles | 229 | 304 | 76 | 30.452 | ||
| Pfam | 231 | 302 | 72 | 1.2E-33 | ||
| ProSitePatterns | 255 | 280 | 26 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0340100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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