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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0342200 |
| Transcript ID | LotjaGi3g1v0342200.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 7-dehydrocholesterol reductase; TAIR: AT1G50430.1 Ergosterol biosynthesis ERG4/ERG24 family; Swiss-Prot: sp|Q9LDU6|ST7R_ARATH 7-dehydrocholesterol reductase; TrEMBL-Plants: tr|A0A0S3T0X2|A0A0S3T0X2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0342200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:71743794..71748867) extracted from Lotus japonicus Gifu genome v1.2.
AAGAGTGAAATTGTTCACTCACCACTAGTCACCTACGCTTCCATGATTTCTCTCCTCACACTCTGTCCTCCATTCGTAAT CCTCCTGTAAGATTCGATTCGATTCGATTCAATCCATTTCATTTCACCTCAATTTCACAGATCTCACTCACTTCGTCAAT TTCACGCAGATGGTACACCATGACACTCGCCGATGGATCCATTTTACAAACATTCAACAACTTGAACCAAACCGGCGTCA AAACCTTCTTCCTCCATTCATGGCCCAAACCCTCTGCAACCGCTTACAAAATCATCGCCGTCTACGCCGCATTTGAAGCC GCGCTTCAGCTTCTTCTCCCCGGTAAAACTGTTCACGGCCCTGTCTCCCCCGCCGGCAACGTACCTGTCTACAAGGTCAA CTATCACTTCTCTTTTCTCTTCTTCTTTCTAAACTTGATAGGATCAATGATTCAATGTTGTGTTGTTGTTTCAGGCGAAT GGTGTTGCAGCGTATCTAGTGACTTTGATTACTTATCTTGGTTTATGGTGGTGCGTTTAATGTTTTCAAATTTCAACCCT GTTTGTTTGTCTCTTTTTGCATTTCTAGTTTGTTTACCACTATTAGCATGTTTATTAATTGCTGAAATGAGATTATGGTC CTTTATGATTAGTTGACTGGGGGAGATACTAGATTTGATTCATTTTATAATACATTCATCCGTTTCGAGCCGAAGAAAAT GAGAATCGGGCGAAAATTTGACACACTATTCAGAATTATGAATTGTGAATCAAAAGAGACAGGATGGATTTTTTTAGGGA GGCAAATACAACATTTAAATACGAGAGAAAAATTCTATTAGGGGTAATCATAGCATGTGACTCTTACTTGGTCTTTGCTG TTGGTGTTAGTTGAGAGGAGGAAAGTAATGAAGTCATATAAAATTAATTTTTGGCTATGAATTAGAGATCTCAATTCATA GTAAGTATTCTGTGTTATGTTTGAAAATGCAACTTATGAATAAACTGATTGAATGTTTGCACAAAGATCAGCAGTTTTTA TTACCCCTCCCCCTAAAAAACAGAGAGAGAATCAGCAAAGTAGATATAAATACATAATTTAGATGTTCACTGGGAACAAA ACTTGGAATATTGGAGGCTATTTCACGTGTGTGATGGATATATTGGGTGAAACACAAAAAGGAAAAAGAAAAACAAAGCT GGTATCTCCAATTGATTATGGCTTTGAATTTTGTATCTTAATGAAGGTAGGCCTGTCCTGGTAAAGGCTAAAAAATAAAA AAAGTCCAAGTTAGTGTGTGTTCTTCTGTAAGAAATTTGTGTTACAATACAAGCTTTTCCTTCAAAGCAAGATTTTTCTT TTCACTTTTTTTGTGGAAGATGACTTGCGAATTTTGTATGTATTTTTCAGGTTTGGGATATTCAACCCTACAATTGTTTA TGATCATTTGGGAGAGATATTTTCAGCCTTGATCTTTGGGAGCTTGGTCTTTTGTGTTCTCTTATACATAAAAGTGAGAC AGTGAAATAGGAGAAGTAAATTGTTTCCTATGATTTACATTCAAAACTTCTAACTAGAGTGTTATGTTTGCTAGGGTCAT TTGGCACCATCTTCCACGGATTCTGGTTCCTCGGGGAACATAATCATTGATTTTTACTGGGTAAACTAATCTCTTCTTTT TACTTTGACTAAACAGTTTCAAAAAAAAGTTACGTGTTTATATACATTAAATGTTGAAAAAGATTGAAGAAAGAGAAAGT GAACGAGGAAATAATGTATAAATAAAAGTGAGGGGCAGCATGATAATTCTCCCAGTCTCCCCAGTCTGATACTTGTTGCT GTCATGCCTCTAGAGGACTGTTGATGCAATGAACCGTTCTTCAAAATTACTGCCTCTCTTATTCTAGACCAAGAAGGCAT AGACAATGCATATAAAATTCTTTTAGAAAGTATCAATACTTTGTCCGTCTGGTCTCATTAAAGTTGCATCCATGATGCCA GTGTGCTTTGAAATTTTTCTTCTAGAAATGTTTCCATGTTTTATGATTATTATTACCATTTTCACCATATATGAAGAAAA TGCTTGAGAAATTAAAATTTTATCTGTTGGGACTTGTTTTTATAAGAACAATAACAGCCCAGGGTATGTGGCAAATGAGA CCTAACTTATAGCCATTCTTGCAGGGTATGGAGCTCTATCCACGCATTGGAAAATATTTTGACATAAAAGTTTTCACAAA CTGTAGATTTGGAATGATGTCATGGGCTGTTCTTGCACTAACCTATTGCATAAAGCAGGTTTAGTCTCTGTTTATATTCT TTGTATTAGTATTGAAGTCATTTAATATCAGATAATGTCTTCTTGTATCAGATCAAGCTAATGATTGTAGTGTCCAACAT TTAGTTGCCTTACACAGTTAGCTATCCTTTGATTACCTATTTGTAGTTTCTGATACTTCCTTGTAGAAACAGCACAAGCC TGGGGGCCTTGGTGGTTAGGTGACCCTGTAACAGAAGCTCGGGATCATCTACTTTTGTATTGTATTGTCTTCTAAACTGT AATAAGATTTCATCTATGATTTTGGATATGAATCACGTTTATCTTTATGTGGGTTGACTTCCTTAGTTGCCTTGGATATA ATGACTGTATGATGCTGACTTATCAACCTCCATAAATAAGATGTGATGATGGGTCCAGTACCAGATAAATCTGGAATGTG TTATTTTTTGAATACTACTGTTGTATGATATATCCACCCTATGGTTAATTCTCTAATGAATGTGCTCTTGTCTTAATAGT ATGAAGAAAATGGGAAAGTAGCTGACTCGATGCTTGTAAATACTACATTAATGCTGGTGTATGTTACCAAGTTTTTCTGG TGGGAAGCTGGATATTGGAACACAATGGATATTGCACATGATCGAGGTATACACGTGCTTTATTATTGTTTCTGTGACAC ACTTACTCTTTCCCATTGTTCTATCGAAGTATGAGTGGTTGTTAGGAAGACTAGTATTTTTTATCTTCAAGAAAAGAATG ATCTCCAGTTTTCATGGATATAGACTATATCTTCCATTCCATGATATATATGATTGCTAAATTCTTTGCACACATCGTAT TTAAACTTCTTTATCGTCTCACTAAATCTTAAAACACCTAAATCTGGCAGCTGGATTTTATATTTGCTGGGGCTGTTTGG TGTGGGTTCCATCTGTGTACACTTCTCCTGGAATGTACCTTGTCAACCATCCTGTAAATCTTGGCACCCAGGTACAATCC CCATCCTGTTTGTGTTGCTGGTTTGTTATAGTTATACAGTGAGTGGGGAACAGAATGAAAAGATAGGGTTGAGTTGTTGA AGTGGTGTTGCCAGCAGATTTTTCCTTACTTTTAATATATATTATAATCTTTCCCCAATTTTACTGAAAGTTGTCTTTCT TTCTTGTCTTCCAGCTTGCTCTTTTTATCTTAGTGGCTGGCATTCTTTGCATATACATCAACTATGATTGTGACAGGCAA AGGCAAGAATTTCGTCGGACAAATGGAAAATGCTTGGTCTGGGGAAAAGCTCCATCAAAGGTCTAAATTCATAGAATTTA CTTATTTCATTTTCATTTGGAATGTATGAGATTGGAATACTTACATGAATATTTTCCAGTAGACTTACACAAGGTAACCA TGATGAAAATGCACTTGCAGATAGAGGCCTCATATACTACTAGTTCTGGGCAAACAAAAAGAAGCCTTCTTTTAACCTCT GGATGGTAAGTTTTCACTTATAATTCTGTAAACACAAATGTGTGGCAACTATTGGGGGAGAATGGTTATTACTGGAGAAC TGAGACCATACATGCCTCCCGTGATTGACGAGTTTAAGCTCACCATTTGTTGGGGCTGGTTCCGGACATTTGATTTGAAG TATATTATGATTCCATTAAGTTGATGTTAATAGTTTATATCTAGGTGTGAATGTTATTTTTAACCATAGGTGGCTTTTAA ACTCAAAAGAGGCCTTGGATTTTGATATCTAATGTGACTAGAAGAAAACGCTTTCTGTCTTAGAAAATAACGGTTCACGT TTTTTTGAGTACCTGTAGGTGGGGATTATCTCGTCATTTTCATTATGTCCCTGAAATACTAGCTGCTTTCTTCTGGACAG TGCCAGCTCTTTTCAATCATGTAAGGGTGTCTCTTTCTCTGAACAACAGTACAAGTTGAAAATTTGAGACAATATTAAGC TTAGCTTCTTTTTTCTGGTGCAGTTTTTACCTTACTTCTATGTGATATTTCTTACCATCCTTCTTTTTGATCGAGCAAAA AGGGATGACGATCGATGCAGATCCAAGTAAGCATTCTGTTATATCTTTTAATTGGTTTGCTTTGTGAGTTTTGACTTGTT AGTCGGATACAGTCTCCCATTTTTCTTATCAATAAGAAATGAACAATATACCACCAATCAACCAGGATTGGGCTGTTTCT GAAGTATACAAATCATTAGTGTAAACTGTAAAGCAATAGAATTTTAGAACATCTCAATTTCGCATGGCATTGTTAATAAA AGACGCATAAATTAAAGAACGTTTCTGTTCATGTTGGTACCAAAAGGAATATTGAGTGCAGAACAGTTATAAAGAATATA AAGTATGGTTTCTTGAAACCACTAATTTATTTATCATGGAGTCGAATTAACATTTTGTTACCAAAGGTTTAGAAATTTTT TGGTTCTGGTTTGAAGTAGATAGAGTATGAGAGAAGAAAGATTTTTGAAACTCAGATTTTCGTTACTGATGGGTAGTGTG CAAGTAATATTTATCCAATGTGAGAGTATGGGTTATAGCTGAGTGACCTCCGCTTCTCTGTTACAACTGTCTGACCAATG CTAACAGATTCAGTTCTAATTATATCAGCTATCTATAGATACAGGTGTTAAATAGAAACCAAAACTACTGCATTCTATTA TGGTCAGCAACCGTGGACATGGAGTTGAAAATTTTCTTTGTTTGCAGGTATGGCAAGTACTGGAAACTGTATTGCGACAA GGTTCCTTACAGAATCATTCCGGGAATATACTGA
CDS sequence (LotjaGi3g1v0342200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTTCTCTCCTCACACTCTGTCCTCCATTCGTAATCCTCCTATGGTACACCATGACACTCGCCGATGGATCCATTTT ACAAACATTCAACAACTTGAACCAAACCGGCGTCAAAACCTTCTTCCTCCATTCATGGCCCAAACCCTCTGCAACCGCTT ACAAAATCATCGCCGTCTACGCCGCATTTGAAGCCGCGCTTCAGCTTCTTCTCCCCGGTAAAACTGTTCACGGCCCTGTC TCCCCCGCCGGCAACGTACCTGTCTACAAGGCGAATGGTGTTGCAGCGTATCTAGTGACTTTGATTACTTATCTTGGTTT ATGGTGGTTTGGGATATTCAACCCTACAATTGTTTATGATCATTTGGGAGAGATATTTTCAGCCTTGATCTTTGGGAGCT TGGTCTTTTGTGTTCTCTTATACATAAAAGGTCATTTGGCACCATCTTCCACGGATTCTGGTTCCTCGGGGAACATAATC ATTGATTTTTACTGGGGTATGGAGCTCTATCCACGCATTGGAAAATATTTTGACATAAAAGTTTTCACAAACTGTAGATT TGGAATGATGTCATGGGCTGTTCTTGCACTAACCTATTGCATAAAGCAGTATGAAGAAAATGGGAAAGTAGCTGACTCGA TGCTTGTAAATACTACATTAATGCTGGTGTATGTTACCAAGTTTTTCTGGTGGGAAGCTGGATATTGGAACACAATGGAT ATTGCACATGATCGAGCTGGATTTTATATTTGCTGGGGCTGTTTGGTGTGGGTTCCATCTGTGTACACTTCTCCTGGAAT GTACCTTGTCAACCATCCTGTAAATCTTGGCACCCAGCTTGCTCTTTTTATCTTAGTGGCTGGCATTCTTTGCATATACA TCAACTATGATTGTGACAGGCAAAGGCAAGAATTTCGTCGGACAAATGGAAAATGCTTGGTCTGGGGAAAAGCTCCATCA AAGATAGAGGCCTCATATACTACTAGTTCTGGGCAAACAAAAAGAAGCCTTCTTTTAACCTCTGGATGGTGGGGATTATC TCGTCATTTTCATTATGTCCCTGAAATACTAGCTGCTTTCTTCTGGACAGTGCCAGCTCTTTTCAATCATGTAAGGTTTT TACCTTACTTCTATGTGATATTTCTTACCATCCTTCTTTTTGATCGAGCAAAAAGGGATGACGATCGATGCAGATCCAAG TATGGCAAGTACTGGAAACTGTATTGCGACAAGGTTCCTTACAGAATCATTCCGGGAATATACTGA
Protein sequence (LotjaGi3g1v0342200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MISLLTLCPPFVILLWYTMTLADGSILQTFNNLNQTGVKTFFLHSWPKPSATAYKIIAVYAAFEAALQLLLPGKTVHGPV SPAGNVPVYKANGVAAYLVTLITYLGLWWFGIFNPTIVYDHLGEIFSALIFGSLVFCVLLYIKGHLAPSSTDSGSSGNII IDFYWGMELYPRIGKYFDIKVFTNCRFGMMSWAVLALTYCIKQYEENGKVADSMLVNTTLMLVYVTKFFWWEAGYWNTMD IAHDRAGFYICWGCLVWVPSVYTSPGMYLVNHPVNLGTQLALFILVAGILCIYINYDCDRQRQEFRRTNGKCLVWGKAPS KIEASYTTSSGQTKRSLLLTSGWWGLSRHFHYVPEILAAFFWTVPALFNHVRFLPYFYVIFLTILLFDRAKRDDDRCRSK YGKYWKLYCDKVPYRIIPGIY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| PANTHER | 1 | 421 | 421 | 7.2E-248 | – | |
| PANTHER | 1 | 421 | 421 | 7.2E-248 | – | |
| Phobius | 4 | 16 | 13 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 17 | 24 | 8 | - | – | |
| Phobius | 25 | 52 | 28 | - | – | |
| Pfam | 28 | 421 | 394 | 1.1E-82 | ||
| TMHMM | 49 | 71 | 23 | - | – | |
| Phobius | 53 | 73 | 21 | - | – | |
| Phobius | 74 | 93 | 20 | - | – | |
| TMHMM | 91 | 113 | 23 | - | – | |
| Phobius | 94 | 113 | 20 | - | – | |
| Phobius | 114 | 124 | 11 | - | – | |
| TMHMM | 123 | 142 | 20 | - | – | |
| Phobius | 125 | 142 | 18 | - | – | |
| Phobius | 143 | 245 | 103 | - | – | |
| ProSitePatterns | 157 | 172 | 16 | - | ||
| TMHMM | 182 | 199 | 18 | - | – | |
| Gene3D | 212 | 420 | 209 | 4.9E-5 | – | |
| TMHMM | 214 | 236 | 23 | - | – | |
| Phobius | 246 | 264 | 19 | - | – | |
| TMHMM | 248 | 270 | 23 | - | – | |
| Phobius | 265 | 275 | 11 | - | – | |
| TMHMM | 274 | 296 | 23 | - | – | |
| Phobius | 276 | 296 | 21 | - | – | |
| Phobius | 297 | 349 | 53 | - | – | |
| TMHMM | 344 | 366 | 23 | - | – | |
| Phobius | 350 | 367 | 18 | - | – | |
| Phobius | 368 | 372 | 5 | - | – | |
| TMHMM | 370 | 387 | 18 | - | – | |
| Phobius | 373 | 390 | 18 | - | – | |
| ProSitePatterns | 385 | 408 | 24 | - | ||
| Phobius | 391 | 421 | 31 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Sterol biosynthetic process | The chemical reactions and pathways resulting in the formation of sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule. | ||
| Molecular function | Oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces NAD or NADP. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi3g1v0342200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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