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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0346000 |
| Transcript ID | LotjaGi3g1v0346000.1 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Kelch repeat-containing protein family; TAIR: AT1G51540.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q9LK31|Y3272_ARATH Kelch repeat-containing protein At3g27220; TrEMBL-Plants: tr|A0A151RPA1|A0A151RPA1_CAJCA Kelch repeat-containing protein family; Found in the gene: LotjaGi3g1v0346000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:72354801..72359624) extracted from Lotus japonicus Gifu genome v1.2.
TAATGAATGGAAACTCTGAACTCCATCCTCAAAAGATTAGGGTATCACCACATTTAATTTTTTTTATCAAAATACATTTA ACTATTAAAGTATTACAATATTATGTGCGGAGTGATTATTAGTTCTTTAAAAGATATATAATTACCACAAAACGAATTTA AGCTTCTTTAAACTCATAAATACAACTTAGGAATCAAATGTGAAATTATAAGCATTGTTCATTACTCACAATGGTAGCTC ACTTGACAAAACATATTAAGTTGCAAATCTGAATGACATGGTTCGGGCGTCGGTGAAGGTCGGTTCGGCCAAGCTCGCCG TCATCTGCGTCGGCCTTCTAGGTTTCGCTCTCGTCGCCGACTTCCTCTGGGCTTCCTCTTCCTCCTCCTCCATCTGGACC TCCAAACCTTCCACCACCACCATCGTCGTTCCCAATAAACCAGACAAGAACAAGAAAGATGCTGGAAGAGTCCTTGCAGC AGCGTACGCCGATTTACCCGGTCCCCAACTCACCTGGCAAAAGATGGCACCGTCACCCGTCCCTCGTCTCGACGGAGCTG CAATCCAGATTCGGAATCATCTATTCGTCTTCGCTGGCTACGGCTCCATCGATTCTGTAATTGCCATTTTTCATTACATC ACAATCTCGATCGAAACCCTGACTGATTCTGTTTTTTGTTATTTTCAGGTACATTCACATGTTGATGTATATAATTTTAG TGATAATACTTGGGGAGAAAGATTTGATATGCCTAAGGAAATGGCACATTCACATTTAGGGATGGTGACTGATGGAAGGT ATATTTATGTGGTTACTGGACAGTATGGTCCTCAATGTAGAGGTCCTACGGCGCGTAATTTCGTGCTTGACACTGAAACA AAGCAATGGGAAGATCTTCCTCCCTTGCCAGTTCCTAGGTATGTTGGATTCAATCCAATTTTCCTTTGCAATTCACATGC TGAAAGTTTTCACTTGAAATATGATATCTTAATGGTGCTTTGCCAATTTTGCATCTTGATGTCCCTACTGGTAGTATAGT ATTTCTATTGACAATTAGTTCTACTTAGTGTCTAGGCATCTTCTAAGTATTGTTGTTAACATTTTTAGTGGTTTCAAACC TTTAGTTAGCATCAGATTTCCCTGTGTAGTTGGTTGCTTCAAATTTCTATGAATAGTTATACTTTCTGCTAGTGACTTGC TTCAATTCAATCCTTTTGAAAGAACTGCAATAAATAGAAGAGAATGATGAAGACTGAAATTTTTGACATGAAACAGAAAT AGAGGATTCTAAGGGAAGGGAGGATATCTGGTCAAACTCACTTCGTCCTGTCTTTCTTGCTTGTCAGCTGCACTCTCTGC CCATAATGCTATCAGATAATGCAGAATTTTATAGCACAAATAGAAGGTGCTAGAGAACCCGGATTTGCAGCGGTGTCTGA GAGGTCATCTTATTTTTGTTCATCAAAATTATCTTTAACTAATGGGATTGGAAAGTTGATGTTTGGAAGGAGTAACAGGC GTAGAAACTATGAGACTGCAGAAGTTTGGGAAAGAAGATAGAGTGTTGGGTTTTTTTTACATTTAAAATGCAGTGTTAAA GGAAAACAGGGGCTCTTATGTTATTTGTATTGCTAATACTAATACATACACAAACGAGTTTATGGTGCAAAATGATAATA ATATTTTAACTTCATTGACAACTAAATAGAACTAACTTTAATAATGTTATCGTATCCAATTTTATTCAGTTATCACTAGT CTGACTTTTGTTGGAGGTAGAGGGGGGCCTAGAAAACACTATAGATCAACCAATTAAGGATTTTATATTTAAATTGTTTG TTTTATGATATGATTTATGATCAATGTTGTTAATGGCGGACTATGGCGGATTGTTGCAGGATGTCGGCCATGGCAAAGAG CCAAAAACCCCACTTAGTGATAACACTGTTTAGGATAGGACATTATCTTCTTGCTTGATCCATACAACCAACCCCACTTA GTGAGAAAATACTTTTGTTATTGTTGTTCTCTAGTCTGAATATTTTCAGCCATAAGGAAACATGTGTGTAATTTTTTTGT ATCGTGGTTTTGGGCGGAAAATTTTGACAATATTATATTCAGATATGCACCAGCAACTCAACTATGGAGAGGCAGATTGC ATGTGATGGGCGGAAGTAAAGAGAATCGACATACACCTGGATTAGAACACTGGAGTCTTGCTGTGAAGGATGGAAAAGCA TTAGAAAAGGAGTGGAGAAGTGAGATACCCATTCCCCGTGGAGGACCTCACAGGTTCGTGACTGTCTGATACACAAGTCA TTCAATATAATAAGGGCTAGTGTAATACTGCATGTATAGACTATAGAGATAACAATAACATATTAGTAGCCTATTTTGTT TTGTTATAGCTATAAAAACATCAATTAGGAAAAGTGGTTTTTTCTTATAACAGTGTGTTTTACTACTATTGTTATTTATA TGATTTTTTCGCAATACATTATTTCATTTCATGTTTCTCCGAAAGTCACATCTTCATAATTTTGAACCATTTTGGTCTCT TAGGTGGCATTTGATATCGGAAGAACTTCATGGCTTCCTATTTATTTCCTTTTTTTCTAACTTCTCCATTGGATTTTATA CTCCAAATTCTATGCCCTTTCTGATTGTTGGAATGTGGCAACATGGAAGTTTTTCTTTTCTTGCCTTTACTAGCAGTATC ATTTTTCATTATGTTCTCTTGGCCCTTATGGTTCATCTAACTTGGATGCTGTAAAGTGCAGTAAATTATTTAGCATTAAG AATGAAGCTGGATACCGTTTTTCAATGGATTTTGGTACAAAATTTAGACATTAGGAACATGTCATTTGAGTCCAACACAT TATATTTAATCTAGGTTGATTTTCATATCATTTTCTTATTTGAATGCCATCATGTATATGTCACCTGCAATTTTTGCTAC TTATTAATATCCTATTTTAGAGCTTGTGTTGTAGTTGATGATCGTCTCTATGTTCTTGGTGGTCAAGAAGGTGATTTTAT GGCCAAACCTGGGTCTCCTATTTTTAAGTGCTCACGCAGGTTGGAGGTAAGTGACAAATAATATTATTATTCTTGTCTTA TTTGGCCATATTGTGGTCAAACCCAGGCATCGTGCTCCTTTATATCAATTTTGGCCGAAAGATTGTGTTTGTGTGTGTGA ATGTGTTTTCCTTTTCTCTAAACTGAATTGATAGTACATATGATTGACGTCCTTGTAATTTTTATTGATTCTAAGTTTTA TTTTTTCACAAAGCTGCCTCATAGTTTGGAATTCTCTGTGCTCATTGTTTACTGTCATGCCAGGTAGTCTATGCTGATGT TTACATGTTGGATGATGAAATGAAGTGGAAAGTGCTACCTTCAATGCCAAAACCAAACTCACATATTGAATTTGCTTGGG TGGTTGTAAACAATTCCATTGTCATTGTTGGTGGCACGACAGAGAAGCACCCTGAAACTAAGAAGATGGTTTTAAATGGA GAAGTAGTCCAGTTTAACCTTAATACTTTGGTACACACTCCTCATATACAAAGCACTTGAGAATTTTGTCTACATTGCTG CATATTTCTTCATACTCAATCACTTATGTTGGCATGCATTCTCATACACATATTACTCATTTATACTAACAACACAAAGA AGTACTTCATTTCCGTAATTTCCTCCTGTTACCCTCCACTCATGTGACCTTGAAATTGGGGTTTGACAAAATTCGTCTAT ATTTCTCCCAACGCTATGAAGTTTCCATAATTTGTTATTCAGCCAAACTCCTGTCCTAAATAATATTCTATTCCACCTTA AGCTTGCCACAAGAATTAGGATTGAGTTGCTGGAGTGAGATTCTAAAATATTATAAGATGACTGAGCATTCTTGTTCTCT ATTTCTTAAAACCTTGCCTTATTTTTAAATAACAAATGGGCTTTGAAGTGTACATTCCACTAAATGAATGTGACCACTGT TAGATGTTCTTGGGTACCTTTTTACCCTCACATTCAGTGAAATTCAAGCATGTCCTGAGTCCTTTTAAATGTCTAGTTTT TCAAAGCTCTTTACTGTCATAAATTATGGTTAGTTATGGACCTTATTTACTGTCAACATGTGATTGAAACAAGGAATTAT CTAATTGCTTTAATTCAATACACATGTCAAGATGATAGTCTGCAGATGATGACAGCAACAATATAGTGCATGTTTGGAAA TCCTTCTACAATTGATTATGAAGCTAGAATCCATGAAAGAAAAACAGATCCAAACATACTAATTATCTAATTGCAATTAG GAGCATCATACTATGTTGTCAGTGTTACTGATTGTTTATTTCCATTCTTATCAATTTTGCAGAAGTGGTCCGTGGTTGGA AAATTACCTTACCGGGTAAAAACCACGCTAGTTGGATTTTGGGATGGATGGTTGTACTTCACTTCAGGACAGCGAGACAA GGGACCAGATGATCCATCTCCCAAAAAAGTTATTGGGGAGATGTGGAAGACAAAATTACAATTGAATGACTGAGCAATTG ATGTGGAATTTTTTAGTAGCCTGTTATTTCTCCAAAAGTGCAGCAGAGATGAAGAGGCCAAAATAGTTACACATTCTTTA TCATAAAGAATATTCATTGTTGTAATTTACTAGTAATGACTGTAATTGAATTCAACATTAATAGATGTCGTCATTTGTCA CCGATGTTTTGCAAAATTTTACTAACTGGTTTTTGTACTATATATTTATTTGCTGCCTATCCATCTTTTCAAGTAAATAT TAGAAGTTGAAGTTGTTTTTTTTA
CDS sequence (LotjaGi3g1v0346000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTCGGGCGTCGGTGAAGGTCGGTTCGGCCAAGCTCGCCGTCATCTGCGTCGGCCTTCTAGGTTTCGCTCTCGTCGC CGACTTCCTCTGGGCTTCCTCTTCCTCCTCCTCCATCTGGACCTCCAAACCTTCCACCACCACCATCGTCGTTCCCAATA AACCAGACAAGAACAAGAAAGATGCTGGAAGAGTCCTTGCAGCAGCGTACGCCGATTTACCCGGTCCCCAACTCACCTGG CAAAAGATGGCACCGTCACCCGTCCCTCGTCTCGACGGAGCTGCAATCCAGATTCGGAATCATCTATTCGTCTTCGCTGG CTACGGCTCCATCGATTCTGTAATTGCCATTTTTCATTACATCACAATCTCGATCGAAACCCTGACTGATTCTGTTTTTT GTTATTTTCAGGTACATTCACATGTTGATGTATATAATTTTAGTGATAATACTTGGGGAGAAAGATTTGATATGCCTAAG GAAATGGCACATTCACATTTAGGGATGGTGACTGATGGAAGGTATATTTATGTGGTTACTGGACAGTATGGTCCTCAATG TAGAGGTCCTACGGCGCGTAATTTCGTGCTTGACACTGAAACAAAGCAATGGGAAGATCTTCCTCCCTTGCCAGTTCCTA GATATGCACCAGCAACTCAACTATGGAGAGGCAGATTGCATGTGATGGGCGGAAGTAAAGAGAATCGACATACACCTGGA TTAGAACACTGGAGTCTTGCTGTGAAGGATGGAAAAGCATTAGAAAAGGAGTGGAGAAGTGAGATACCCATTCCCCGTGG AGGACCTCACAGAGCTTGTGTTGTAGTTGATGATCGTCTCTATGTTCTTGGTGGTCAAGAAGGTGATTTTATGGCCAAAC CTGGGTCTCCTATTTTTAAGTGCTCACGCAGGTTGGAGGTAGTCTATGCTGATGTTTACATGTTGGATGATGAAATGAAG TGGAAAGTGCTACCTTCAATGCCAAAACCAAACTCACATATTGAATTTGCTTGGGTGGTTGTAAACAATTCCATTGTCAT TGTTGGTGGCACGACAGAGAAGCACCCTGAAACTAAGAAGATGGTTTTAAATGGAGAAGTAGTCCAGTTTAACCTTAATA CTTTGAAGTGGTCCGTGGTTGGAAAATTACCTTACCGGGTAAAAACCACGCTAGTTGGATTTTGGGATGGATGGTTGTAC TTCACTTCAGGACAGCGAGACAAGGGACCAGATGATCCATCTCCCAAAAAAGTTATTGGGGAGATGTGGAAGACAAAATT ACAATTGAATGACTGA
Protein sequence (LotjaGi3g1v0346000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVRASVKVGSAKLAVICVGLLGFALVADFLWASSSSSSIWTSKPSTTTIVVPNKPDKNKKDAGRVLAAAYADLPGPQLTW QKMAPSPVPRLDGAAIQIRNHLFVFAGYGSIDSVIAIFHYITISIETLTDSVFCYFQVHSHVDVYNFSDNTWGERFDMPK EMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTARNFVLDTETKQWEDLPPLPVPRYAPATQLWRGRLHVMGGSKENRHTPG LEHWSLAVKDGKALEKEWRSEIPIPRGGPHRACVVVDDRLYVLGGQEGDFMAKPGSPIFKCSRRLEVVYADVYMLDDEMK WKVLPSMPKPNSHIEFAWVVVNNSIVIVGGTTEKHPETKKMVLNGEVVQFNLNTLKWSVVGKLPYRVKTTLVGFWDGWLY FTSGQRDKGPDDPSPKKVIGEMWKTKLQLND
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 115 | 115 | 1.8E-230 | – | |
| SignalP_GRAM_POSITIVE | 1 | 32 | 32 | - | – | |
| PANTHER | 1 | 115 | 115 | 1.8E-230 | – | |
| Phobius | 1 | 12 | 12 | - | – | |
| Phobius | 1 | 32 | 32 | - | – | |
| TMHMM | 13 | 32 | 20 | - | – | |
| Phobius | 13 | 24 | 12 | - | – | |
| Phobius | 25 | 32 | 8 | - | – | |
| Phobius | 33 | 431 | 399 | - | – | |
| Gene3D | 74 | 250 | 177 | 1.5E-20 | ||
| SUPERFAMILY | 79 | 387 | 309 | 1.03E-40 | ||
| Pfam | 89 | 159 | 71 | 1.8E-5 | – | |
| PANTHER | 137 | 429 | 293 | 1.8E-230 | – | |
| PANTHER | 137 | 429 | 293 | 1.8E-230 | – | |
| Pfam | 165 | 214 | 50 | 7.1E-7 | – | |
| Gene3D | 253 | 428 | 176 | 8.0E-17 | ||
| Pfam | 270 | 328 | 59 | 1.1E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0346000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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