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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0346000 |
| Transcript ID | LotjaGi3g1v0346000.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Kelch repeat-containing protein family; TAIR: AT1G51540.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q9LK31|Y3272_ARATH Kelch repeat-containing protein At3g27220; TrEMBL-Plants: tr|A0A151RPA1|A0A151RPA1_CAJCA Kelch repeat-containing protein family; Found in the gene: LotjaGi3g1v0346000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:72355072..72359350) extracted from Lotus japonicus Gifu genome v1.2.
GACATGGTTCGGGCGTCGGTGAAGGTCGGTTCGGCCAAGCTCGCCGTCATCTGCGTCGGCCTTCTAGGTTTCGCTCTCGT CGCCGACTTCCTCTGGGCTTCCTCTTCCTCCTCCTCCATCTGGACCTCCAAACCTTCCACCACCACCATCGTCGTTCCCA ATAAACCAGACAAGAACAAGAAAGATGCTGGAAGAGTCCTTGCAGCAGCGTACGCCGATTTACCCGGTCCCCAACTCACC TGGCAAAAGATGGCACCGTCACCCGTCCCTCGTCTCGACGGAGCTGCAATCCAGATTCGGAATCATCTATTCGTCTTCGC TGGCTACGGCTCCATCGATTCTGTAATTGCCATTTTTCATTACATCACAATCTCGATCGAAACCCTGACTGATTCTGTTT TTTGTTATTTTCAGGTACATTCACATGTTGATGTATATAATTTTAGTGATAATACTTGGGGAGAAAGATTTGATATGCCT AAGGAAATGGCACATTCACATTTAGGGATGGTGACTGATGGAAGGTATATTTATGTGGTTACTGGACAGTATGGTCCTCA ATGTAGAGGTCCTACGGCGCGTAATTTCGTGCTTGACACTGAAACAAAGCAATGGGAAGATCTTCCTCCCTTGCCAGTTC CTAGGTATGTTGGATTCAATCCAATTTTCCTTTGCAATTCACATGCTGAAAGTTTTCACTTGAAATATGATATCTTAATG GTGCTTTGCCAATTTTGCATCTTGATGTCCCTACTGGTAGTATAGTATTTCTATTGACAATTAGTTCTACTTAGTGTCTA GGCATCTTCTAAGTATTGTTGTTAACATTTTTAGTGGTTTCAAACCTTTAGTTAGCATCAGATTTCCCTGTGTAGTTGGT TGCTTCAAATTTCTATGAATAGTTATACTTTCTGCTAGTGACTTGCTTCAATTCAATCCTTTTGAAAGAACTGCAATAAA TAGAAGAGAATGATGAAGACTGAAATTTTTGACATGAAACAGAAATAGAGGATTCTAAGGGAAGGGAGGATATCTGGTCA AACTCACTTCGTCCTGTCTTTCTTGCTTGTCAGCTGCACTCTCTGCCCATAATGCTATCAGATAATGCAGAATTTTATAG CACAAATAGAAGGTGCTAGAGAACCCGGATTTGCAGCGGTGTCTGAGAGGTCATCTTATTTTTGTTCATCAAAATTATCT TTAACTAATGGGATTGGAAAGTTGATGTTTGGAAGGAGTAACAGGCGTAGAAACTATGAGACTGCAGAAGTTTGGGAAAG AAGATAGAGTGTTGGGTTTTTTTTACATTTAAAATGCAGTGTTAAAGGAAAACAGGGGCTCTTATGTTATTTGTATTGCT AATACTAATACATACACAAACGAGTTTATGGTGCAAAATGATAATAATATTTTAACTTCATTGACAACTAAATAGAACTA ACTTTAATAATGTTATCGTATCCAATTTTATTCAGTTATCACTAGTCTGACTTTTGTTGGAGGTAGAGGGGGGCCTAGAA AACACTATAGATCAACCAATTAAGGATTTTATATTTAAATTGTTTGTTTTATGATATGATTTATGATCAATGTTGTTAAT GGCGGACTATGGCGGATTGTTGCAGGATGTCGGCCATGGCAAAGAGCCAAAAACCCCACTTAGTGATAACACTGTTTAGG ATAGGACATTATCTTCTTGCTTGATCCATACAACCAACCCCACTTAGTGAGAAAATACTTTTGTTATTGTTGTTCTCTAG TCTGAATATTTTCAGCCATAAGGAAACATGTGTGTAATTTTTTTGTATCGTGGTTTTGGGCGGAAAATTTTGACAATATT ATATTCAGATATGCACCAGCAACTCAACTATGGAGAGGCAGATTGCATGTGATGGGCGGAAGTAAAGAGAATCGACATAC ACCTGGATTAGAACACTGGAGTCTTGCTGTGAAGGATGGAAAAGCATTAGAAAAGGAGTGGAGAAGTGAGATACCCATTC CCCGTGGAGGACCTCACAGGTTCGTGACTGTCTGATACACAAGTCATTCAATATAATAAGGGCTAGTGTAATACTGCATG TATAGACTATAGAGATAACAATAACATATTAGTAGCCTATTTTGTTTTGTTATAGCTATAAAAACATCAATTAGGAAAAG TGGTTTTTTCTTATAACAGTGTGTTTTACTACTATTGTTATTTATATGATTTTTTCGCAATACATTATTTCATTTCATGT TTCTCCGAAAGTCACATCTTCATAATTTTGAACCATTTTGGTCTCTTAGGTGGCATTTGATATCGGAAGAACTTCATGGC TTCCTATTTATTTCCTTTTTTTCTAACTTCTCCATTGGATTTTATACTCCAAATTCTATGCCCTTTCTGATTGTTGGAAT GTGGCAACATGGAAGTTTTTCTTTTCTTGCCTTTACTAGCAGTATCATTTTTCATTATGTTCTCTTGGCCCTTATGGTTC ATCTAACTTGGATGCTGTAAAGTGCAGTAAATTATTTAGCATTAAGAATGAAGCTGGATACCGTTTTTCAATGGATTTTG GTACAAAATTTAGACATTAGGAACATGTCATTTGAGTCCAACACATTATATTTAATCTAGGTTGATTTTCATATCATTTT CTTATTTGAATGCCATCATGTATATGTCACCTGCAATTTTTGCTACTTATTAATATCCTATTTTAGAGCTTGTGTTGTAG TTGATGATCGTCTCTATGTTCTTGGTGGTCAAGAAGGTGATTTTATGGCCAAACCTGGGTCTCCTATTTTTAAGTGCTCA CGCAGGTTGGAGGTAAGTGACAAATAATATTATTATTCTTGTCTTATTTGGCCATATTGTGGTCAAACCCAGGCATCGTG CTCCTTTATATCAATTTTGGCCGAAAGATTGTGTTTGTGTGTGTGAATGTGTTTTCCTTTTCTCTAAACTGAATTGATAG TACATATGATTGACGTCCTTGTAATTTTTATTGATTCTAAGTTTTATTTTTTCACAAAGCTGCCTCATAGTTTGGAATTC TCTGTGCTCATTGTTTACTGTCATGCCAGGTAGTCTATGCTGATGTTTACATGTTGGATGATGAAATGAAGTGGAAAGTG CTACCTTCAATGCCAAAACCAAACTCACATATTGAATTTGCTTGGGTGGTTGTAAACAATTCCATTGTCATTGTTGGTGG CACGACAGAGAAGCACCCTGAAACTAAGAAGATGGTTTTAAATGGAGAAGTAGTCCAGTTTAACCTTAATACTTTGGTAC ACACTCCTCATATACAAAGCACTTGAGAATTTTGTCTACATTGCTGCATATTTCTTCATACTCAATCACTTATGTTGGCA TGCATTCTCATACACATATTACTCATTTATACTAACAACACAAAGAAGTACTTCATTTCCGTAATTTCCTCCTGTTACCC TCCACTCATGTGACCTTGAAATTGGGGTTTGACAAAATTCGTCTATATTTCTCCCAACGCTATGAAGTTTCCATAATTTG TTATTCAGCCAAACTCCTGTCCTAAATAATATTCTATTCCACCTTAAGCTTGCCACAAGAATTAGGATTGAGTTGCTGGA GTGAGATTCTAAAATATTATAAGATGACTGAGCATTCTTGTTCTCTATTTCTTAAAACCTTGCCTTATTTTTAAATAACA AATGGGCTTTGAAGTGTACATTCCACTAAATGAATGTGACCACTGTTAGATGTTCTTGGGTACCTTTTTACCCTCACATT CAGTGAAATTCAAGCATGTCCTGAGTCCTTTTAAATGTCTAGTTTTTCAAAGCTCTTTACTGTCATAAATTATGGTTAGT TATGGACCTTATTTACTGTCAACATGTGATTGAAACAAGGAATTATCTAATTGCTTTAATTCAATACACATGTCAAGATG ATAGTCTGCAGATGATGACAGCAACAATATAGTGCATGTTTGGAAATCCTTCTACAATTGATTATGAAGCTAGAATCCAT GAAAGAAAAACAGATCCAAACATACTAATTATCTAATTGCAATTAGGAGCATCATACTATGTTGTCAGTGTTACTGATTG TTTATTTCCATTCTTATCAATTTTGCAGAAGTGGTCCGTGGTTGGAAAATTACCTTACCGGGTAAAAACCACGCTAGTTG GATTTTGGGATGGATGGTTGTACTTCACTTCAGGACAGCGAGACAAGGGACCAGATGATCCATCTCCCAAAAAAGTTATT GGGGAGATGTGGAAGACAAAATTACAATTGAATGACTGA
CDS sequence (LotjaGi3g1v0346000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTCGGGCGTCGGTGAAGGTCGGTTCGGCCAAGCTCGCCGTCATCTGCGTCGGCCTTCTAGGTTTCGCTCTCGTCGC CGACTTCCTCTGGGCTTCCTCTTCCTCCTCCTCCATCTGGACCTCCAAACCTTCCACCACCACCATCGTCGTTCCCAATA AACCAGACAAGAACAAGAAAGATGCTGGAAGAGTCCTTGCAGCAGCGTACGCCGATTTACCCGGTCCCCAACTCACCTGG CAAAAGATGGCACCGTCACCCGTCCCTCGTCTCGACGGAGCTGCAATCCAGATTCGGAATCATCTATTCGTCTTCGCTGG CTACGGCTCCATCGATTCTGTACATTCACATGTTGATGTATATAATTTTAGTGATAATACTTGGGGAGAAAGATTTGATA TGCCTAAGGAAATGGCACATTCACATTTAGGGATGGTGACTGATGGAAGGTATATTTATGTGGTTACTGGACAGTATGGT CCTCAATGTAGAGGTCCTACGGCGCGTAATTTCGTGCTTGACACTGAAACAAAGCAATGGGAAGATCTTCCTCCCTTGCC AGTTCCTAGATATGCACCAGCAACTCAACTATGGAGAGGCAGATTGCATGTGATGGGCGGAAGTAAAGAGAATCGACATA CACCTGGATTAGAACACTGGAGTCTTGCTGTGAAGGATGGAAAAGCATTAGAAAAGGAGTGGAGAAGTGAGATACCCATT CCCCGTGGAGGACCTCACAGAGCTTGTGTTGTAGTTGATGATCGTCTCTATGTTCTTGGTGGTCAAGAAGGTGATTTTAT GGCCAAACCTGGGTCTCCTATTTTTAAGTGCTCACGCAGGTTGGAGGTAGTCTATGCTGATGTTTACATGTTGGATGATG AAATGAAGTGGAAAGTGCTACCTTCAATGCCAAAACCAAACTCACATATTGAATTTGCTTGGGTGGTTGTAAACAATTCC ATTGTCATTGTTGGTGGCACGACAGAGAAGCACCCTGAAACTAAGAAGATGGTTTTAAATGGAGAAGTAGTCCAGTTTAA CCTTAATACTTTGAAGTGGTCCGTGGTTGGAAAATTACCTTACCGGGTAAAAACCACGCTAGTTGGATTTTGGGATGGAT GGTTGTACTTCACTTCAGGACAGCGAGACAAGGGACCAGATGATCCATCTCCCAAAAAAGTTATTGGGGAGATGTGGAAG ACAAAATTACAATTGAATGACTGA
Protein sequence (LotjaGi3g1v0346000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVRASVKVGSAKLAVICVGLLGFALVADFLWASSSSSSIWTSKPSTTTIVVPNKPDKNKKDAGRVLAAAYADLPGPQLTW QKMAPSPVPRLDGAAIQIRNHLFVFAGYGSIDSVHSHVDVYNFSDNTWGERFDMPKEMAHSHLGMVTDGRYIYVVTGQYG PQCRGPTARNFVLDTETKQWEDLPPLPVPRYAPATQLWRGRLHVMGGSKENRHTPGLEHWSLAVKDGKALEKEWRSEIPI PRGGPHRACVVVDDRLYVLGGQEGDFMAKPGSPIFKCSRRLEVVYADVYMLDDEMKWKVLPSMPKPNSHIEFAWVVVNNS IVIVGGTTEKHPETKKMVLNGEVVQFNLNTLKWSVVGKLPYRVKTTLVGFWDGWLYFTSGQRDKGPDDPSPKKVIGEMWK TKLQLND
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 405 | 405 | 1.9E-236 | – | |
| SignalP_GRAM_POSITIVE | 1 | 32 | 32 | - | – | |
| PANTHER | 1 | 405 | 405 | 1.9E-236 | – | |
| Phobius | 1 | 32 | 32 | - | – | |
| Phobius | 1 | 12 | 12 | - | – | |
| TMHMM | 13 | 32 | 20 | - | – | |
| Phobius | 13 | 24 | 12 | - | – | |
| Phobius | 25 | 32 | 8 | - | – | |
| Phobius | 33 | 407 | 375 | - | – | |
| Gene3D | 76 | 229 | 154 | 1.2E-24 | ||
| SUPERFAMILY | 79 | 361 | 283 | 1.07E-43 | ||
| Pfam | 89 | 135 | 47 | 1.3E-8 | – | |
| SMART | 101 | 148 | 48 | 0.58 | ||
| Pfam | 141 | 190 | 50 | 6.5E-7 | – | |
| SMART | 151 | 200 | 50 | 0.77 | ||
| Gene3D | 230 | 404 | 175 | 6.7E-17 | ||
| Pfam | 246 | 304 | 59 | 1.0E-4 | ||
| SMART | 320 | 373 | 54 | 7.9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0346000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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