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LotjaGi3g1v0350700.2

Overview

Field Value
Gene ID LotjaGi3g1v0350700
Transcript ID LotjaGi3g1v0350700.2
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description XH/XS domain protein; TAIR: AT1G15910.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q9S9P3|FDM1_ARATH Factor of DNA methylation 1; TrEMBL-Plants: tr|I1KGU5|I1KGU5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0350700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:72958961..72967005) extracted from Lotus japonicus Gifu genome v1.2.

CTACTCACAATAATTCCTCACACTAGGGTTTTTAATTTCACAATTATTCCTCTCTCTCCTCTCTTTTTCTCTCTCTCTCA TTCTCACTCTCTTCTCCCTGTGAAGAAGCACTCTCATCTCACCAGAGTAAGACCATGTTCCTTCTCTCTCTACCCATTTT CTTCTTCTCTCAGCTGATAACAATGGTGCTGAGGTTTTTCTGCTTTCAAAATGATGAAAATTGATGTCTGATTTGTTGAA TGTAGGGTTCATTTTCATTTCTATGATTTGTTGTTGTTGCATGTATTAGGAGATGAGTATTTGGGAATTTTTTCCTGTTT GTAAACAAAGTGAGATCATTTCTATGTCCAATTAACAAGAGATCTGGCAAATATGGTTTGTGATCTTACCAGAAAACCTC TTAATAACTCAGTAATTGGTGAATTAACTAATAAAACTGGGAATTCAAACTCTCTGTAGCCTCAGATTAGATGCTATATA TATACTCAGATTGAAGAAAAGAATCACACAATTGTTTTGTTGTAAAATCATTATTATAATACCAAAATTTAAAAAGTGCA ATTTATTCCATATATTATGCATAGACAGAGGGATTCCTAGACTGTTTGCTGTTGTTGTTTGTTCTATACTCATTTCATGA AGATATGGGGTGGGGGGGGGGTGTCAAATTGTGATAGCAATGCATGTGCCAAGACAGACTGTTAATTTCTTAGCACTCAT TGATATTATTTTACTCCATTTTTTCTTGCTTTTTGCAGTGTTATTATACACTGTTTTTTTTATAGGCAAATGTTTTTTTT TTTTATAGGCAAATGTTAGTTGTTAGTAATGTTAGTAAATTAGTACCTCAGGGTTCGAACCCTTCACCATTCATCCCACC CAACCCTTATACACTGTTAATGAGCCTTTTTATGGAAGTTCTTGCTTTGCTACTTTCTAAATTATTTTTCCCTATCATGT TTATAAGCAATCTTTTAGCTGGACTGACTGTGCTATTTGTATGCAAGGCTTAAATGGACTACAGCTCTGACGAAGATTCA GATATCAGTGACTCTGAGATAGATGAGTACTCTCAGAAACCATATGAAGATTTAAGGTCAGGGAAATACAAGGTTAAACA TGTGAATGGAGCTCTTAGATGTCCTTTTTGTGCTGGGAAGAAGAAACAAGATTACAAATATAAGGAGTTGTTTCAACATG CTTCAGGGGTGAGTAAGGGTTCTGCTAACAGAAGTGCACAACAGAAGGCAAACCACCTGGCATTGGCCAGGTATTTGGAG ATTGACCTAGCCAGTGAAGCAGAGCAAGTCCAGCGCCCGGCTTTACCCCAACCTGTCAGTAAACCTCTACAGCAACATGA TCTTTATGTTTGGCCCTGGACGGGCATAATTGTTAACATAAAGAATAAATCGCACGATTCTGGACACTGGTTGAAGGAAT TTGCTAAATACAAACCACTAGATATTCATATATTCTTGATAGACGGTGAGCTGATTGCTCAGGCTGTGATAGACTTTAAC AATGACTGGAATGGTTTCATGAATGCAAGTGAATTTGAGAAATCGTTTGAAACTGCACGCCATGGTAAGAAGGATTGGAA TTTGAAGAAGCTGGAAGCTGGATCAGACATTTATGGATGGGTTGCACGGGAAGTTGATTATAATTGTGGAGGGCCAATTG GGGAATACCTTCGAAACAAAGGAAGGTTGAGGACAGTCTCAGATATTGTTCAAGAAGCATCTGAAAGCCGAAATAGTATT GTGGCAAATCTTGCAAATGAAATCGATCTTACCAATGAAAACCTTGACGAAATGCAGTACAAGTACAATGAGAAGACTAT GTCCTTGAGTAGGATGCTCGAGGATAAAGACAGGCTACACAGTGCTTTTGTTGAAGGTTTGTGTATTTTCTGTTATACTC TGATTGTTCCTTCTTGTATGTATTATATCCATGTGTATCAAATTTGGGTGTTTTACTATTCTTGTATTTCATGGAAGCAG AAGAATAGAAAAAACTTTATAGTTGCTAATACTAAGAAGTTTTCTCATATCTTTGTCAGAATCAAGGAATATGCAGCGTA GAGCTCGTAATGAGGTGCGAAGGATCTTGGAAGAACAAGAAAAGTTGAGCAGTGAATTGGAGGCAAAAAGGCGGAAGCTT GATTCCTGGAGTAGAGATCTAAACAAACGTGAGGTACTAACTGATCAAGAGAGGCAGAAACTTGAAGAGGACAAGAAGAA GGTAATGTATATACATTTTTTTGGCTACTAGTATATTCTCTTTTAAATATTTTTCTGCCATTGATCTTTCATGCTTATCT ATTATCATTGTTGCAAACTTATTGGCCTGTTTTTATCTCTGGTTTGGTTCTAATATTGTTGGTTGCTATTGAACATATTG ATCCCCTTTAAACAAAATTCCACCTTGCATTGGGCTTTCACCAAAATTTGCTTATCAAAATGATAGGTAGAGGCTTCCTA TGAGGAATTTATATGTGAGGAGAAATAGGAAGGATGCAGGGATAATATCCCCTGAGTAGGTTGTGACAGAATAACTGCCT AACTGACAGTTGTTGTTAGTGAGGTTATTAGTACTTAGCGAGTTTGTGAGACTCATTGCAGACTGGTCTCTTGAATATAA GATCTTTTCCTTTCTTCTGTCCTAACGAGTTCTAGACATCCTAAGCTCTTGCTCTTTGCTTAGCACTGCACACCTCAAAT TTGCTTCTAAATATCTTTTTTTTTTTTTGAAAAAGCCAAAACCATGCTTCTAACAACTTTAGTTTGCTCATCCAGTTAAG GATGATAGACATAACTGAACTTAACTTGAGTCCCACCAGCTTTAAAAAGAGATTTCCAAAAGTTGCTCAAGAAGAGTGAG TCTCTATCTGATACAATAGAACTAGGAAACCCATGAAGTCTGACAATTTCCTGAAGGAAAACAGAAACTACCTCATGGAT GACTTAATGGAATAAAGTGTGCATACTTTGTAAGTCTGACTTAGGTGAACCACTAATGGAGTCCATTGATATATCAGTCG AGACCTTAGTAGGAACAGGTAAAGGTTGCAAAAGACCTGCTGGTGATAAACTATCGTATTTATTTCCCTGACATATGTCA GAAGTTGCCACAAACTGTTTGATATCAGACTGCATGCCTTCCTGTTAGATACATGTTTAGTATGTAGTCCAGTTGTTAAT TGTTAGACGAGCTGCTTGTAGAAGTTTGTGTTTTGTTTAGTTTCTGTTATAGCAGCCCATGTGCTGTTATTTCTATATAA TGTAACTACTGCTAGTTCAGCAAGCAATTAATGAATAACAGAATTTCAGATTTCTTAACTGAATTTCCCTCTCTCTCTCT CTCTCTCTCAACCTTTTCTCAACTATTCTGAACATGGTATCAAGAGCTCTTCTTGATTCATGAGGCATGGCTTCCAATAG CAATCCTTTCGCTGAGAATTCTTCATCCAGTTCTTCTTCCACTTTTTCCCAGAGCATCTATCAAGCTCGAAGAGAATAAT TTTCTCACATAGAGGAAGCAAATCAAAAGAGTCATCAGATCTCACAAGTTGCAGCGATTCGTGGTCAATCAATGATTCCT CCAAAGTTCTTGACTGAAGAAGATCGAGAACTTGATCCAGTGGTCATGTCATGTGTATTCAGATTGGGAATAACAGGATT CGTTGCTGTTTACTTGGCTTCTTCCATCGCTATCTGACTCACTTCTACCTTCTGTTATCAGTTCATTCCTACCAGGTCTG GGATGGAATCCATGATTTCTTTCAAGCTCAGGCACAGTCTACGCAAAAGCTTCAATGACTGCTTCTGAATACTTGCACAA GATTAAGACTATTGTTAATACTCTGATCTCCATTGGAGATCCTGTTCCTTTTCCCGATCACCTTGAGGCGGTGACTACGA CTACCTGATGAATTCGATGTCCCCGAAGTATAGCTTAAGTGGTAAGAGCTGGGGGACATATGGGTTGGGGAGGGGAAGAT CCAGGGATCAAATCCCTAGTGGGGAAATTTGGCGAGTAAAAGAAACTGATGAATTCAACATGCTCATGACTCTTCTGTTT AATCGTGGCACCCCTTGCTCAATTATTGAAGTTGAAGCAATGACCACCAGTCACAAATCCGAGCTTGGCCGAAGCAAGAA GAAGCAAATTGGAGACTCGTTGATTTCTGCTAATCTTGTACAGGATCAGGTACCTTCATCCGATTGCAATCTACCACTTA CAGACAACAGAATCTACGACTACCTGCGGTTATCGTTTCTTGGTTCAGTGTCAAATCTGCTACTGGATTTGGCATGATGC CTCAATTTGCTACTATTGTAATAGTTATGGTCATCAACAGTTTGGGCCAATGGCTGGTTATGGATCTCATAGTTTTGGCT TCAATGGTTTTGCCTATTCTGGAACTAGAGATCCTACTCCTCAGTTCTGGTACTCTCAACAATTTGCACCTTCCTTTGGA CCTTCTTTCCATGCTGGTGCACAACATGAGGAAACAATGCCTCCTGGTTCACAGTTTTCACAGCCTTCAACAATTTCATA TCTTTCCTCTCCTTCTCCTCTCCTTATACTTGTCTGTTAGTTACCCTGTACCCATATTTAACCGACTTTGACAACTGTTA ACATGCAAACTCAGTCAGCCGCACTAACCATTAACTAACTCCTAATGAGAGTGTAGGGTTATTTCCGCTAGCTTCTCTCC TGCATTTCCTTTCATATACTCAGGTTCTCCAAGGCTCATATCAATTGTTATCAGAACCTTTAACCTATAATAGAAAACAG TTCCTTCTCAATTCTGTCTACTTCAATTACCCTGCAAATAGGAGTATTTGGCCTGAAAACCTAATGATAAATCAAGTCCT CTCTTCATTGGCCCCTATTGAAGGTTGCCCTGGTCATATACAAGCTACAGCTACCTGATCATATCAACTTTCAACCAGTC TTTCATGTTTTCTTGATGAAGAAAGAACTGGAGCGTTATCTAAAATCACAGCCTCTTCCTGACATGCTATCTGAAGAACA GGCGCCCTAGGGCACAACCTTAAGTACTTGTGGATGTCAGGAAGAATTATTCAGGTGTTGTTGAACAGTAGAATTGCTGA TAAAGTGTCAACATGTAACAGAGTGGGAGAACAGTTGGGAGCCGGCATTCAGGAGGCATTTCCTAGCTTCCACCTTGAGG ACAAGGTGGATTTTTAAATGCGGGTATTGATAGATAGAGGCTTCCTATTAGAAAGGTCTACTCTAGGAGAAATAAGAGGG GTGCAGGTGTTGAACTGTTGGTAGCCCTAAGCAGGTTGTAATAACTGTCTAACTGATGAGTTTCTTAATTGTAGCAGAAT TAAAATAGAGAAAAGCAGGGAACTGAAGACTTAATGTAGTTTGTAATCATAAACTCCTATTAAGAGCAAGTGTTATTTTT CGAAAATAGACTATAAGCATAAGCATGATATATGTAAATCATAAGCATTTTATTTTCATTCCATAAACTGCCCTCAGAAG AATTGCTATCTGATACCTCAGTTTCCATACTTGTCATGCTGGACATGCCTTTAAAATTTGAAATATTAGCATATATGTTG TGATTTTACAAAACTTACGATATCATCTCTTTCGTTGTTTTGCTTTTACAAAACTTACAAAATAATCTCTTTGTTGTTCC AGAAAGATTTGAGGAATGAATCACTCTTGTTGGCTTCAAAGGAGCAGGAGATAGCTGATGAGAATGTTTTAAGGCTTGTC GCGGAGCAACAGGTTTGCCTTCTATTTGGTGTCTTGGTTATGAAAAGACAGTAGCATATGTTTTTTATCACTTAATTCTT ATGCATTGTGAATGTCTTCTGCTGATGTGGATTTCATAATTTTCAGAGAGAGAAGGAGGAGGCCTTGAACAAGATCCTTC AGCTGGAAAAACAGCTAGATGCCAAACAGAAATTGGAGATGGAAATTGAGGAGTTAAAAGGGAAATTACAAGTTATGAAA CATCTTGGAGATGAAGATGATGTAGCTGTCCAGAGTAAGATGAAAGAAATGAATGATGAATTGGAAGAGAAAAAAGATAA TCTGGAGAGTATGGAGGCCATGAATCAACAGCTCTTTGTCAAGGAGCGCCAAAGCAATGATGAACTACAGGAAGCTCGTA AAGAATTAATAAAAGTAGGATCTCATTTACTTTCTTGCAGATATTTGTTTTCTATAAGCAAGAATGTCACTCAACTAAGT AGCTATCCTTTAACGTTTCTGTTCATGGATTTTTGAAGATAACCGACTAACAAGTAACTGCTTCTGTACATAATCTCTTC ATGTCAAAGCTGTAATCATATTTGCAAGAAGATTCTCTTCACCTTCCTGTAGGAAATCAAAGTTTTGATATTCTATTATT GTGTCATATACTCATATTGGATTGTGGAGATTAAAGTTTTTGTAAACTTAACGTTTCTCTTCTTAATTTATAATATTTTA GGGGTTGGACGATATGCTGAATGGTCCTAGAACTAATATTGGGCTCAAGAGAATGGGAGAACTTGATCAGAAAGTTTTTG TGAATTGCTGCAAGAAAAGATTTCCTCTCGAAGATGCGGGGACAAAGGGTGTTGAGCTTTGCTCTTTGTGGCAGGAGAAC GTGAAGAATTCATCTTGGCATCCATTTAAAGTGATCAATGCTGATGATAAACCAGAGGCATGTCATCCTTTTTGTGTTCT TGATGTAGTTATGCCTCAATTGATTTGGTTTACATGTTTATGTGTGTTCTTTTCACGTATGTTGGAAATTTGCTATATCT GCTTTCACGTATGTGTCATTATAAAAGATGGCTTGACAATGGTAAAAGTCATGCATTAAATTGTCAGACTCACTAGCTTC TGATCTTGCTACTTTCATTATTACTGCTAGGGCATAGGAATTGTATAATAGTAGTACTGAACACGCCTAATGATGTTTCA TTTGATATATGATACAGTCCATTATAAATGAGGATGATGATCAATTACGACAGCTCAAGCAGGAATGGGGAGATGAGATA CACTCAGCTGTAACAACAGCTTTGAAAGAATTACTTGAATACAATGCAAGTGGTGGATATACTGTTTTTGAGCTGTGGAA CTTCAAGGAACAAAGGAAAGCAACATTGAAGGAAGTCATCAGTTACATTGTGGATAAAATTAAGCCACCTAAACGCAAAA GAGCATAGGCAAGAAGTTAGTGTTTCAAACTTTCAGTAAGTTTTTTGTTCAGTAGTGCTTTGAAGGGCTGCTAAATGAGC ATGGATTGATATTCCTGCAATGGATTCACCGAATAAAATAGAATTTGGAAATAAAGAAATGACAAGAACTTGGTTGCATA CATATCCACATGTTTTGACTTTTAGACTCTTGTTAGGTGCAGTAAATAATTTAGATTCACATTGAACACTGTCTGATATC TAGAATGAGCTTATTTAATATCCTGAAGGAGTATATTTAAATTTAATGCATTAACTTATTCTATAATTTGTTTATGAGCT ATACAACTTACCAGATTTTTTTTTCTAGTAAGAGAAGATATCCTGATATTTTGACCACCGCAATTGCCAAAGATACATAT TTCAGTTCAGTCATATACCTATTAACTAAACCAATGTTCTATTGAGGCTTTGCAGGGGAGTAATGCATGATATCTTGATT GGAAGATGGAATGTAGGAACTTTTTCATGGGCTTGTTGTATGAACTTTCAATCTTGAGGCATTGTAGCGGAGAAATATAC ATCTCAATGGGAAAATGGAATGTAGGATCTTTTCATTTGGCTTGTTTGAGCTGCAAGGACAAGCTACTGGATATAACAGT TGAACATGAAACATGTCTGCAATTCCCATCAATGGTAGATTTGAACATGTGTTAACACGTTAATTTATTTCTAAATTTCG ATTTGAACATCTGTAATCTGATAATTTATTTCCAGAATTTCACTCAGTACTATTGATGAATCAATTCTCGCGTAGGATTT TATGTCAATGGATGCAAATCAGTATATATTTATAATTTAATGGTA 

CDS sequence (LotjaGi3g1v0350700.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGACTACAGCTCTGACGAAGATTCAGATATCAGTGACTCTGAGATAGATGAGTACTCTCAGAAACCATATGAAGATTT AAGGTCAGGGAAATACAAGGTTAAACATGTGAATGGAGCTCTTAGATGTCCTTTTTGTGCTGGGAAGAAGAAACAAGATT ACAAATATAAGGAGTTGTTTCAACATGCTTCAGGGGTGAGTAAGGGTTCTGCTAACAGAAGTGCACAACAGAAGGCAAAC CACCTGGCATTGGCCAGGTATTTGGAGATTGACCTAGCCAGTGAAGCAGAGCAAGTCCAGCGCCCGGCTTTACCCCAACC TGTCAGTAAACCTCTACAGCAACATGATCTTTATGTTTGGCCCTGGACGGGCATAATTGTTAACATAAAGAATAAATCGC ACGATTCTGGACACTGGTTGAAGGAATTTGCTAAATACAAACCACTAGATATTCATATATTCTTGATAGACGGTGAGCTG ATTGCTCAGGCTGTGATAGACTTTAACAATGACTGGAATGGTTTCATGAATGCAAGTGAATTTGAGAAATCGTTTGAAAC TGCACGCCATGGTAAGAAGGATTGGAATTTGAAGAAGCTGGAAGCTGGATCAGACATTTATGGATGGGTTGCACGGGAAG TTGATTATAATTGTGGAGGGCCAATTGGGGAATACCTTCGAAACAAAGGAAGGTTGAGGACAGTCTCAGATATTGTTCAA GAAGCATCTGAAAGCCGAAATAGTATTGTGGCAAATCTTGCAAATGAAATCGATCTTACCAATGAAAACCTTGACGAAAT GCAGTACAAGTACAATGAGAAGACTATGTCCTTGAGTAGGATGCTCGAGGATAAAGACAGGCTACACAGTGCTTTTGTTG AAGAATCAAGGAATATGCAGCGTAGAGCTCGTAATGAGGTGCGAAGGATCTTGGAAGAACAAGAAAAGTTGAGCAGTGAA TTGGAGGCAAAAAGGCGGAAGCTTGATTCCTGGAGTAGAGATCTAAACAAACGTGAGGTACTAACTGATCAAGAGAGGCA GAAACTTGAAGAGGACAAGAAGAAGAAAGATTTGAGGAATGAATCACTCTTGTTGGCTTCAAAGGAGCAGGAGATAGCTG ATGAGAATGTTTTAAGGCTTGTCGCGGAGCAACAGAGAGAGAAGGAGGAGGCCTTGAACAAGATCCTTCAGCTGGAAAAA CAGCTAGATGCCAAACAGAAATTGGAGATGGAAATTGAGGAGTTAAAAGGGAAATTACAAGTTATGAAACATCTTGGAGA TGAAGATGATGTAGCTGTCCAGAGTAAGATGAAAGAAATGAATGATGAATTGGAAGAGAAAAAAGATAATCTGGAGAGTA TGGAGGCCATGAATCAACAGCTCTTTGTCAAGGAGCGCCAAAGCAATGATGAACTACAGGAAGCTCGTAAAGAATTAATA AAAGGGTTGGACGATATGCTGAATGGTCCTAGAACTAATATTGGGCTCAAGAGAATGGGAGAACTTGATCAGAAAGTTTT TGTGAATTGCTGCAAGAAAAGATTTCCTCTCGAAGATGCGGGGACAAAGGGTGTTGAGCTTTGCTCTTTGTGGCAGGAGA ACGTGAAGAATTCATCTTGGCATCCATTTAAAGTGATCAATGCTGATGATAAACCAGAGTCCATTATAAATGAGGATGAT GATCAATTACGACAGCTCAAGCAGGAATGGGGAGATGAGATACACTCAGCTGTAACAACAGCTTTGAAAGAATTACTTGA ATACAATGCAAGTGGTGGATATACTGTTTTTGAGCTGTGGAACTTCAAGGAACAAAGGAAAGCAACATTGAAGGAAGTCA TCAGTTACATTGTGGATAAAATTAAGCCACCTAAACGCAAAAGAGCATAG 

Protein sequence (LotjaGi3g1v0350700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDYSSDEDSDISDSEIDEYSQKPYEDLRSGKYKVKHVNGALRCPFCAGKKKQDYKYKELFQHASGVSKGSANRSAQQKAN HLALARYLEIDLASEAEQVQRPALPQPVSKPLQQHDLYVWPWTGIIVNIKNKSHDSGHWLKEFAKYKPLDIHIFLIDGEL IAQAVIDFNNDWNGFMNASEFEKSFETARHGKKDWNLKKLEAGSDIYGWVAREVDYNCGGPIGEYLRNKGRLRTVSDIVQ EASESRNSIVANLANEIDLTNENLDEMQYKYNEKTMSLSRMLEDKDRLHSAFVEESRNMQRRARNEVRRILEEQEKLSSE LEAKRRKLDSWSRDLNKREVLTDQERQKLEEDKKKKDLRNESLLLASKEQEIADENVLRLVAEQQREKEEALNKILQLEK QLDAKQKLEMEIEELKGKLQVMKHLGDEDDVAVQSKMKEMNDELEEKKDNLESMEAMNQQLFVKERQSNDELQEARKELI KGLDDMLNGPRTNIGLKRMGELDQKVFVNCCKKRFPLEDAGTKGVELCSLWQENVKNSSWHPFKVINADDKPESIINEDD DQLRQLKQEWGDEIHSAVTTALKELLEYNASGGYTVFELWNFKEQRKATLKEVISYIVDKIKPPKRKRA 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite 1 23 23 -
PANTHER 4 627 624 4.3E-275
PANTHER 4 627 624 4.3E-275
Pfam 43 85 43 2.0E-20
Gene3D 111 272 162 1.1E-51
Pfam 116 217 102 1.5E-28
CDD 118 216 99 2.01886E-27
Coils 250 270 21 -
Coils 293 334 42 -
Coils 341 361 21 -
Coils 381 425 45 -
Coils 430 478 49 -
Pfam 497 627 131 4.6E-52

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Biological process Gene silencing by RNA Any process in which RNA molecules inactivate expression of target genes.

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0350700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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