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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0350700 |
| Transcript ID | LotjaGi3g1v0350700.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | XH/XS domain protein; TAIR: AT1G15910.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q9S9P3|FDM1_ARATH Factor of DNA methylation 1; TrEMBL-Plants: tr|I1KGU5|I1KGU5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0350700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:72959798..72965992) extracted from Lotus japonicus Gifu genome v1.2.
ATGGACTACAGCTCTGACGAAGATTCAGATATCAGTGACTCTGAGATAGATGAGTACTCTCAGAAACCATATGAAGATTT AAGGTCAGGGAAATACAAGGTTAAACATGTGAATGGAGCTCTTAGATGTCCTTTTTGTGCTGGGAAGAAGAAACAAGATT ACAAATATAAGGAGTTGTTTCAACATGCTTCAGGGGTGAGTAAGGGTTCTGCTAACAGAAGTGCACAACAGAAGGCAAAC CACCTGGCATTGGCCAGGTATTTGGAGATTGACCTAGCCAGTGAAGCAGAGCAAGTCCAGCGCCCGGCTTTACCCCAACC TGTCAGTAAACCTCTACAGCAACATGATCTTTATGTTTGGCCCTGGACGGGCATAATTGTTAACATAAAGAATAAATCGC ACGATTCTGGACACTGGTTGAAGGAATTTGCTAAATACAAACCACTAGATATTCATATATTCTTGATAGACGGTGAGCTG ATTGCTCAGGCTGTGATAGACTTTAACAATGACTGGAATGGTTTCATGAATGCAAGTGAATTTGAGAAATCGTTTGAAAC TGCACGCCATGGTAAGAAGGATTGGAATTTGAAGAAGCTGGAAGCTGGATCAGACATTTATGGATGGGTTGCACGGGAAG TTGATTATAATTGTGGAGGGCCAATTGGGGAATACCTTCGAAACAAAGGAAGGTTGAGGACAGTCTCAGATATTGTTCAA GAAGCATCTGAAAGCCGAAATAGTATTGTGGCAAATCTTGCAAATGAAATCGATCTTACCAATGAAAACCTTGACGAAAT GCAGTACAAGTACAATGAGAAGACTATGTCCTTGAGTAGGATGCTCGAGGATAAAGACAGGCTACACAGTGCTTTTGTTG AAGGTTTGTGTATTTTCTGTTATACTCTGATTGTTCCTTCTTGTATGTATTATATCCATGTGTATCAAATTTGGGTGTTT TACTATTCTTGTATTTCATGGAAGCAGAAGAATAGAAAAAACTTTATAGTTGCTAATACTAAGAAGTTTTCTCATATCTT TGTCAGAATCAAGGAATATGCAGCGTAGAGCTCGTAATGAGGTGCGAAGGATCTTGGAAGAACAAGAAAAGTTGAGCAGT GAATTGGAGGCAAAAAGGCGGAAGCTTGATTCCTGGAGTAGAGATCTAAACAAACGTGAGGTACTAACTGATCAAGAGAG GCAGAAACTTGAAGAGGACAAGAAGAAGGTAATGTATATACATTTTTTTGGCTACTAGTATATTCTCTTTTAAATATTTT TCTGCCATTGATCTTTCATGCTTATCTATTATCATTGTTGCAAACTTATTGGCCTGTTTTTATCTCTGGTTTGGTTCTAA TATTGTTGGTTGCTATTGAACATATTGATCCCCTTTAAACAAAATTCCACCTTGCATTGGGCTTTCACCAAAATTTGCTT ATCAAAATGATAGGTAGAGGCTTCCTATGAGGAATTTATATGTGAGGAGAAATAGGAAGGATGCAGGGATAATATCCCCT GAGTAGGTTGTGACAGAATAACTGCCTAACTGACAGTTGTTGTTAGTGAGGTTATTAGTACTTAGCGAGTTTGTGAGACT CATTGCAGACTGGTCTCTTGAATATAAGATCTTTTCCTTTCTTCTGTCCTAACGAGTTCTAGACATCCTAAGCTCTTGCT CTTTGCTTAGCACTGCACACCTCAAATTTGCTTCTAAATATCTTTTTTTTTTTTTGAAAAAGCCAAAACCATGCTTCTAA CAACTTTAGTTTGCTCATCCAGTTAAGGATGATAGACATAACTGAACTTAACTTGAGTCCCACCAGCTTTAAAAAGAGAT TTCCAAAAGTTGCTCAAGAAGAGTGAGTCTCTATCTGATACAATAGAACTAGGAAACCCATGAAGTCTGACAATTTCCTG AAGGAAAACAGAAACTACCTCATGGATGACTTAATGGAATAAAGTGTGCATACTTTGTAAGTCTGACTTAGGTGAACCAC TAATGGAGTCCATTGATATATCAGTCGAGACCTTAGTAGGAACAGGTAAAGGTTGCAAAAGACCTGCTGGTGATAAACTA TCGTATTTATTTCCCTGACATATGTCAGAAGTTGCCACAAACTGTTTGATATCAGACTGCATGCCTTCCTGTTAGATACA TGTTTAGTATGTAGTCCAGTTGTTAATTGTTAGACGAGCTGCTTGTAGAAGTTTGTGTTTTGTTTAGTTTCTGTTATAGC AGCCCATGTGCTGTTATTTCTATATAATGTAACTACTGCTAGTTCAGCAAGCAATTAATGAATAACAGAATTTCAGATTT CTTAACTGAATTTCCCTCTCTCTCTCTCTCTCTCTCAACCTTTTCTCAACTATTCTGAACATGGTATCAAGAGCTCTTCT TGATTCATGAGGCATGGCTTCCAATAGCAATCCTTTCGCTGAGAATTCTTCATCCAGTTCTTCTTCCACTTTTTCCCAGA GCATCTATCAAGCTCGAAGAGAATAATTTTCTCACATAGAGGAAGCAAATCAAAAGAGTCATCAGATCTCACAAGTTGCA GCGATTCGTGGTCAATCAATGATTCCTCCAAAGTTCTTGACTGAAGAAGATCGAGAACTTGATCCAGTGGTCATGTCATG TGTATTCAGATTGGGAATAACAGGATTCGTTGCTGTTTACTTGGCTTCTTCCATCGCTATCTGACTCACTTCTACCTTCT GTTATCAGTTCATTCCTACCAGGTCTGGGATGGAATCCATGATTTCTTTCAAGCTCAGGCACAGTCTACGCAAAAGCTTC AATGACTGCTTCTGAATACTTGCACAAGATTAAGACTATTGTTAATACTCTGATCTCCATTGGAGATCCTGTTCCTTTTC CCGATCACCTTGAGGCGGTGACTACGACTACCTGATGAATTCGATGTCCCCGAAGTATAGCTTAAGTGGTAAGAGCTGGG GGACATATGGGTTGGGGAGGGGAAGATCCAGGGATCAAATCCCTAGTGGGGAAATTTGGCGAGTAAAAGAAACTGATGAA TTCAACATGCTCATGACTCTTCTGTTTAATCGTGGCACCCCTTGCTCAATTATTGAAGTTGAAGCAATGACCACCAGTCA CAAATCCGAGCTTGGCCGAAGCAAGAAGAAGCAAATTGGAGACTCGTTGATTTCTGCTAATCTTGTACAGGATCAGGTAC CTTCATCCGATTGCAATCTACCACTTACAGACAACAGAATCTACGACTACCTGCGGTTATCGTTTCTTGGTTCAGTGTCA AATCTGCTACTGGATTTGGCATGATGCCTCAATTTGCTACTATTGTAATAGTTATGGTCATCAACAGTTTGGGCCAATGG CTGGTTATGGATCTCATAGTTTTGGCTTCAATGGTTTTGCCTATTCTGGAACTAGAGATCCTACTCCTCAGTTCTGGTAC TCTCAACAATTTGCACCTTCCTTTGGACCTTCTTTCCATGCTGGTGCACAACATGAGGAAACAATGCCTCCTGGTTCACA GTTTTCACAGCCTTCAACAATTTCATATCTTTCCTCTCCTTCTCCTCTCCTTATACTTGTCTGTTAGTTACCCTGTACCC ATATTTAACCGACTTTGACAACTGTTAACATGCAAACTCAGTCAGCCGCACTAACCATTAACTAACTCCTAATGAGAGTG TAGGGTTATTTCCGCTAGCTTCTCTCCTGCATTTCCTTTCATATACTCAGGTTCTCCAAGGCTCATATCAATTGTTATCA GAACCTTTAACCTATAATAGAAAACAGTTCCTTCTCAATTCTGTCTACTTCAATTACCCTGCAAATAGGAGTATTTGGCC TGAAAACCTAATGATAAATCAAGTCCTCTCTTCATTGGCCCCTATTGAAGGTTGCCCTGGTCATATACAAGCTACAGCTA CCTGATCATATCAACTTTCAACCAGTCTTTCATGTTTTCTTGATGAAGAAAGAACTGGAGCGTTATCTAAAATCACAGCC TCTTCCTGACATGCTATCTGAAGAACAGGCGCCCTAGGGCACAACCTTAAGTACTTGTGGATGTCAGGAAGAATTATTCA GGTGTTGTTGAACAGTAGAATTGCTGATAAAGTGTCAACATGTAACAGAGTGGGAGAACAGTTGGGAGCCGGCATTCAGG AGGCATTTCCTAGCTTCCACCTTGAGGACAAGGTGGATTTTTAAATGCGGGTATTGATAGATAGAGGCTTCCTATTAGAA AGGTCTACTCTAGGAGAAATAAGAGGGGTGCAGGTGTTGAACTGTTGGTAGCCCTAAGCAGGTTGTAATAACTGTCTAAC TGATGAGTTTCTTAATTGTAGCAGAATTAAAATAGAGAAAAGCAGGGAACTGAAGACTTAATGTAGTTTGTAATCATAAA CTCCTATTAAGAGCAAGTGTTATTTTTCGAAAATAGACTATAAGCATAAGCATGATATATGTAAATCATAAGCATTTTAT TTTCATTCCATAAACTGCCCTCAGAAGAATTGCTATCTGATACCTCAGTTTCCATACTTGTCATGCTGGACATGCCTTTA AAATTTGAAATATTAGCATATATGTTGTGATTTTACAAAACTTACGATATCATCTCTTTCGTTGTTTTGCTTTTACAAAA CTTACAAAATAATCTCTTTGTTGTTCCAGAAAGATTTGAGGAATGAATCACTCTTGTTGGCTTCAAAGGAGCAGGAGATA GCTGATGAGAATGTTTTAAGGCTTGTCGCGGAGCAACAGGTTTGCCTTCTATTTGGTGTCTTGGTTATGAAAAGACAGTA GCATATGTTTTTTATCACTTAATTCTTATGCATTGTGAATGTCTTCTGCTGATGTGGATTTCATAATTTTCAGAGAGAGA AGGAGGAGGCCTTGAACAAGATCCTTCAGCTGGAAAAACAGCTAGATGCCAAACAGAAATTGGAGATGGAAATTGAGGAG TTAAAAGGGAAATTACAAGTTATGAAACATCTTGGAGATGAAGATGATGTAGCTGTCCAGAGTAAGATGAAAGAAATGAA TGATGAATTGGAAGAGAAAAAAGATAATCTGGAGAGTATGGAGGCCATGAATCAACAGCTCTTTGTCAAGGAGCGCCAAA GCAATGATGAACTACAGGAAGCTCGTAAAGAATTAATAAAAGTAGGATCTCATTTACTTTCTTGCAGATATTTGTTTTCT ATAAGCAAGAATGTCACTCAACTAAGTAGCTATCCTTTAACGTTTCTGTTCATGGATTTTTGAAGATAACCGACTAACAA GTAACTGCTTCTGTACATAATCTCTTCATGTCAAAGCTGTAATCATATTTGCAAGAAGATTCTCTTCACCTTCCTGTAGG AAATCAAAGTTTTGATATTCTATTATTGTGTCATATACTCATATTGGATTGTGGAGATTAAAGTTTTTGTAAACTTAACG TTTCTCTTCTTAATTTATAATATTTTAGGGGTTGGACGATATGCTGAATGGTCCTAGAACTAATATTGGGCTCAAGAGAA TGGGAGAACTTGATCAGAAAGTTTTTGTGAATTGCTGCAAGAAAAGATTTCCTCTCGAAGATGCGGGGACAAAGGGTGTT GAGCTTTGCTCTTTGTGGCAGGAGAACGTGAAGAATTCATCTTGGCATCCATTTAAAGTGATCAATGCTGATGATAAACC AGAGGCATGTCATCCTTTTTGTGTTCTTGATGTAGTTATGCCTCAATTGATTTGGTTTACATGTTTATGTGTGTTCTTTT CACGTATGTTGGAAATTTGCTATATCTGCTTTCACGTATGTGTCATTATAAAAGATGGCTTGACAATGGTAAAAGTCATG CATTAAATTGTCAGACTCACTAGCTTCTGATCTTGCTACTTTCATTATTACTGCTAGGGCATAGGAATTGTATAATAGTA GTACTGAACACGCCTAATGATGTTTCATTTGATATATGATACAGTCCATTATAAATGAGGATGATGATCAATTACGACAG CTCAAGCAGGAATGGGGAGATGAGATACACTCAGCTGTAACAACAGCTTTGAAAGAATTACTTGAATACAATGCAAGTGG TGGATATACTGTTTTTGAGCTGTGGAACTTCAAGGAACAAAGGAAAGCAACATTGAAGGAAGTCATCAGTTACATTGTGG ATAAAATTAAGCCACCTAAACGCAAAAGAGCATAG
CDS sequence (LotjaGi3g1v0350700.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACTACAGCTCTGACGAAGATTCAGATATCAGTGACTCTGAGATAGATGAGTACTCTCAGAAACCATATGAAGATTT AAGGTCAGGGAAATACAAGGTTAAACATGTGAATGGAGCTCTTAGATGTCCTTTTTGTGCTGGGAAGAAGAAACAAGATT ACAAATATAAGGAGTTGTTTCAACATGCTTCAGGGGTGAGTAAGGGTTCTGCTAACAGAAGTGCACAACAGAAGGCAAAC CACCTGGCATTGGCCAGGTATTTGGAGATTGACCTAGCCAGTGAAGCAGAGCAAGTCCAGCGCCCGGCTTTACCCCAACC TGTCAGTAAACCTCTACAGCAACATGATCTTTATGTTTGGCCCTGGACGGGCATAATTGTTAACATAAAGAATAAATCGC ACGATTCTGGACACTGGTTGAAGGAATTTGCTAAATACAAACCACTAGATATTCATATATTCTTGATAGACGGTGAGCTG ATTGCTCAGGCTGTGATAGACTTTAACAATGACTGGAATGGTTTCATGAATGCAAGTGAATTTGAGAAATCGTTTGAAAC TGCACGCCATGGTAAGAAGGATTGGAATTTGAAGAAGCTGGAAGCTGGATCAGACATTTATGGATGGGTTGCACGGGAAG TTGATTATAATTGTGGAGGGCCAATTGGGGAATACCTTCGAAACAAAGGAAGGTTGAGGACAGTCTCAGATATTGTTCAA GAAGCATCTGAAAGCCGAAATAGTATTGTGGCAAATCTTGCAAATGAAATCGATCTTACCAATGAAAACCTTGACGAAAT GCAGTACAAGTACAATGAGAAGACTATGTCCTTGAGTAGGATGCTCGAGGATAAAGACAGGCTACACAGTGCTTTTGTTG AAGAATCAAGGAATATGCAGCGTAGAGCTCGTAATGAGGTGCGAAGGATCTTGGAAGAACAAGAAAAGTTGAGCAGTGAA TTGGAGGCAAAAAGGCGGAAGCTTGATTCCTGGAGTAGAGATCTAAACAAACGTGAGGTACTAACTGATCAAGAGAGGCA GAAACTTGAAGAGGACAAGAAGAAGAAAGATTTGAGGAATGAATCACTCTTGTTGGCTTCAAAGGAGCAGGAGATAGCTG ATGAGAATGTTTTAAGGCTTGTCGCGGAGCAACAGAGAGAGAAGGAGGAGGCCTTGAACAAGATCCTTCAGCTGGAAAAA CAGCTAGATGCCAAACAGAAATTGGAGATGGAAATTGAGGAGTTAAAAGGGAAATTACAAGTTATGAAACATCTTGGAGA TGAAGATGATGTAGCTGTCCAGAGTAAGATGAAAGAAATGAATGATGAATTGGAAGAGAAAAAAGATAATCTGGAGAGTA TGGAGGCCATGAATCAACAGCTCTTTGTCAAGGAGCGCCAAAGCAATGATGAACTACAGGAAGCTCGTAAAGAATTAATA AAAGGGTTGGACGATATGCTGAATGGTCCTAGAACTAATATTGGGCTCAAGAGAATGGGAGAACTTGATCAGAAAGTTTT TGTGAATTGCTGCAAGAAAAGATTTCCTCTCGAAGATGCGGGGACAAAGGGTGTTGAGCTTTGCTCTTTGTGGCAGGAGA ACGTGAAGAATTCATCTTGGCATCCATTTAAAGTGATCAATGCTGATGATAAACCAGAGTCCATTATAAATGAGGATGAT GATCAATTACGACAGCTCAAGCAGGAATGGGGAGATGAGATACACTCAGCTGTAACAACAGCTTTGAAAGAATTACTTGA ATACAATGCAAGTGGTGGATATACTGTTTTTGAGCTGTGGAACTTCAAGGAACAAAGGAAAGCAACATTGAAGGAAGTCA TCAGTTACATTGTGGATAAAATTAAGCCACCTAAACGCAAAAGAGCATAG
Protein sequence (LotjaGi3g1v0350700.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDYSSDEDSDISDSEIDEYSQKPYEDLRSGKYKVKHVNGALRCPFCAGKKKQDYKYKELFQHASGVSKGSANRSAQQKAN HLALARYLEIDLASEAEQVQRPALPQPVSKPLQQHDLYVWPWTGIIVNIKNKSHDSGHWLKEFAKYKPLDIHIFLIDGEL IAQAVIDFNNDWNGFMNASEFEKSFETARHGKKDWNLKKLEAGSDIYGWVAREVDYNCGGPIGEYLRNKGRLRTVSDIVQ EASESRNSIVANLANEIDLTNENLDEMQYKYNEKTMSLSRMLEDKDRLHSAFVEESRNMQRRARNEVRRILEEQEKLSSE LEAKRRKLDSWSRDLNKREVLTDQERQKLEEDKKKKDLRNESLLLASKEQEIADENVLRLVAEQQREKEEALNKILQLEK QLDAKQKLEMEIEELKGKLQVMKHLGDEDDVAVQSKMKEMNDELEEKKDNLESMEAMNQQLFVKERQSNDELQEARKELI KGLDDMLNGPRTNIGLKRMGELDQKVFVNCCKKRFPLEDAGTKGVELCSLWQENVKNSSWHPFKVINADDKPESIINEDD DQLRQLKQEWGDEIHSAVTTALKELLEYNASGGYTVFELWNFKEQRKATLKEVISYIVDKIKPPKRKRA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 23 | 23 | - | – | |
| PANTHER | 4 | 627 | 624 | 4.3E-275 | – | |
| PANTHER | 4 | 627 | 624 | 4.3E-275 | – | |
| Pfam | 43 | 85 | 43 | 2.0E-20 | ||
| Gene3D | 111 | 272 | 162 | 1.1E-51 | ||
| Pfam | 116 | 217 | 102 | 1.5E-28 | ||
| CDD | 118 | 216 | 99 | 2.01886E-27 | ||
| Coils | 250 | 270 | 21 | - | – | |
| Coils | 293 | 334 | 42 | - | – | |
| Coils | 341 | 361 | 21 | - | – | |
| Coils | 381 | 425 | 45 | - | – | |
| Coils | 430 | 478 | 49 | - | – | |
| Pfam | 497 | 627 | 131 | 4.6E-52 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Gene silencing by RNA | Any process in which RNA molecules inactivate expression of target genes. |
Expression pattern of LotjaGi3g1v0350700.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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