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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0353500 |
| Transcript ID | LotjaGi3g1v0353500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|B9W9Z5|LCL3_CANDC Probable endonuclease LCL3; TrEMBL-Plants: tr|A0A151QYF6|A0A151QYF6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0353500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:73417735..73422536) extracted from Lotus japonicus Gifu genome v1.2.
ATTCAATTCAATATACAGAAAATTTTCATCTTCTTCTTCAAGCTTCTTCAAGCTTTTCTCTGATTTCTTTGATGGTATCA GAGCCCTAGCAAAGGGTTCTGCCATCACAGCTTCCGCAACAATGGTGAATCGCAACAATCACAACAACAATCAAGTTCCT CAGGTGGTTCTCGATCCTTCACAGAACCCAGGATCTCCGTATTTCATTCATTCGAGTGATAATCCTTCTGCTACCATGGT GAATCCACCGTTGAATGGCAAGAATTACAACGCTTGGGCGAGGTCGATGAAGCGTGCGCTCGTGGCGAAGAACAAGTTTC GTTTCGTCAATGGCGAAATTCCGGTGCCGACTGCAACTGATGCGAACTTTGAGGCATGGGATCGATGCAACAGTTTGATA CACTCTTGGATCCTCAATTCGGTAACAACTTCAATTGCAAATAGTATAGTATTTCTTGAAAATGCTTGTGATGCATGGAG AGATCTGAGAGATCGGTTTACTCAAGGTGATTTAGTGAGAATTTCAGAATTGCATAGTGAGATTAGTAATCTGAAACAAA ATTCATTGTCAGTGAATGAATATTACACAGAATTGAAAATTCTTTTGGAAGAATTGGAGAATTATCGGCCAATACCACAG TGTAGATGTGCTGTTCCTTGTAGATGTGATGCAATTGAGAATGTAAAATTGTTCAGAGAGCAAGATAATGCAATCAGATT TCTCTTAGGGCTGAACGATAGTTTTGGAGTAGTGAAGTCTCAAATTTTGATGAGTTATCCTCTTCCATCTATTGCTAAGG TAGTATCCTTGGCAATACAACATGAGAGACAAACTGTTACAGAGGAAACAGGAGATTCATTAGCTATAGTGAATGCAGCA GAAGGGAAGAAGCCATATGGTAGAGGAACATCTGCTAATTCCAATTACAAGAATACTGGAAAATTTTGCACTCATTGCAA AAAGCCAGGGCACACTATTGAAATATGTTACAGGTTACATGGTTATCCAACCACTTTTAACACCAGATATGGTGCACAGA GTTCTAGTCATGTCAACAATACTGGTAGAAGTTATGATTCTTCTGATGATCAAGAGGATGATGCTTATTCACAGAGAGCT ACTGAGGAGCCTTTCACTGCTGACCAGTACAAGAGGATAATTGCCATGATACAGCAAGTTACTACAACTCCAAAGAAAGC ACCAGATAGTAACAATGCTTCTGTGAATCATGTGATAAAATCCACTGCCTATGAAGGAGAAACTACAAGACATGGTAAAC ACTTTGCCTTATCTTGTTTTCAGCACTATGATAGTAGAGATTGGATTATAGATTCTGGGGCAAGTGATCATGTTTGTTTT GATAAAAATAATTTTGATGCACTATCTGAAATCAAACCTATTAGTGTTAAACTTCCAAATGGAGCTACTATCAGAACATG TTATGCAGGCAGTGTTAGAATCACAAAATCAATTTTGTTAACACATGTCTTGTTTGTGCCTGAATTCACTTATAATTTAG TTTCAGTGCATAAATTAGCTAAAGGGCATAAATTTGATGTCATTTTTGGTGAATTTCACTGTTTTGTCCAGGATGTTCAA ACCAAGAGGAAGATTGGTTTGGGTAGTTTACAAGCAGATGAACTTTACCATCTAGTAGTTAGTAGTCCATCTAGTACTTG TTTTTCCATTCAACATAGTCTTCCTGAAATAAGTGGCTTCAGTCACATCATACCACCTGGTGCTCTATGGCACTTCAGGT TAGGACACCTATCTCATGATAGATTACTTGCTCTACATAATATAGATAGTTCTATAGATGTCAGTAAGTCTCTTGTCTGT GATATCTGCCACTTAGCCAAACAGAAAAGAAAGATGTTTTCAGTCAGCTATAGTCATGCACAGAGGTGTTTTGATCTTGT TCATATGGACATTTGGGGTCCTTTGGCTCAAGCTTCAGTCCACAACCACAAATACTTCCTCACTGTGCTAGATGATTATA GTCGGTTTGTTTGGGTTGTGTTACTCCACAACAAGGGAGAGGTTCAGCAGCAGGTGAAGAACTTTGTAGCTTTGATCAAA ACTCAGTTTGGTCATTCTATAAAGACAATCAGAAGTGATAATGGACCAGAATTTCTCCTTCCAGCTTACTATTCTGCTCA GGGTATTATTCACCAAAGATCTTGTGTCTACACACCTCAGCAGAATGGGAGGGTTGAGAGGAAGCATCAGCATATTCTGA ACATAGCCAGAGCACTATTGTTTCAGTCAAAGCTACCTAAAAGAATGTGGTCCTATGCAGTTCTACATGCAGTTTTTCTT ATGAACAGGATACCAAGTAGGCTACTGAAAAATAAATCACCTTATGAGCTACTGTATCAGGAGAAAGCAGATCAGGGAAT GATGAGAGTTTTTGAATCTCTTTGTTTTGCTAATACACTAGCAGCTAACAGGTCTAAGTTGGATCCTAGAGCCAGAAGGT GTGTTTTTCTGGGACATAAGCAGGGCACAAAGGGATTTGTGTTAATGGATCTTACATCACAAGAAATTTTTATTTCTAGA GATGTCATATTTCATGAACATGTTTTGCCATATAAGAGTTCAAGCATGTCATCTTGGTCTTGTCTTGACCTTCAATCACA AGGTGAAACTGTCAATGAAAAAGGTGAAGGTATAGACACACAAGATGTTTCTACACCAGCAGAAAACACACAAAGTGAAG TCACAGCTACACCAACAGTTTTTGATACTAATCAGGGTGATGAAGTGGAAGTCACAACTACACCAGCAGTTTTTGATACT AACCAGGGTGATGAAGTGGTTATTGATCTACCTAATTCTGTGACTGATCAAACTCCTACATCAGTGAGAAAATCCACTAG ACCACTAAAGAGACCTGCTTATCTTGAAAGTTTTCAATATAATGCTTTGCCTACTCGCAGTAGCACAGCACATAGCATCA CTCATTACTATTCACATGATAAATTGTCCACTGCACACAAAGCCTATGCTCTGAACATATCCCTGGATCAAGAGCCCACT TCCTTTTCAGAGGCATCTAAGCATTTGCACTGGCAACAAGCAATGCAAGCAGAAATCAAGGCTCTTGAGAAGAATGAAAC TTGGCAGATTGTGGACTTGCCTAAAGGAATAAAACCTATAGGTAACAAGTGGGTATATAGAATAAAGAGGAATGCAGATG GAAGTCTAGCTAGATATAAAGCTAGACTAGTTGCAAAAGGGTACAATCAGATTGAAGGTCTGGATTATTTTGACACATTT TCTCCAGTAGCAAAGATGACAACAATAAGAGTGGTTTTGGCTTTGGCTGCAGCACAAAACTGGAATCTACATCAACTGGA TGTAGATAATGCTTTCTTGCATGGCACACTAGATGAGGATGTTTACATGAGTATACCTGCAGGGGTCACTTCAGAGAAAC CAAATCAGGCCTGCAAGTTATTAAAATCACTTTATGGGCTCAAGCAAGCCAGTAGAATGTGGTATGAGAAGCTGTCATCA CATTTGAAGGCTCTTGGGTTCACTCAAACAGCTTCTGACCATTCTCTCTTTGTTAAATTTCAAGACACAAATTTCACTGG TTTACTTGTCTATGTAGATAATGTGATTCTCTTTGGCAATACCATGACTGAGTTTCAATCAGTTAAGAATTCACTTCATC AGGCATTTGGAATCAAAGATCTGGGAGTATTGAAATATTTTCTTGGTCTTGAAGTTGCACATTCAACCTCAGGAATTTCT CTTTGTCAGAGAAAATATTGTCTAGATTTACTTCAGGAGACAGGAACTTTGGGAAGTAAACCAGTTTCCACTCCTCTTGA TCCTTCTATTAAGTTGAGTCTTACTCAAGGCAAGCCATTTGATGATCCAGCAGCCTATAGAAGACTAGTAGGTAGATTGT TGTACCTTACTACTACTAGACCTGATATCTCATATGCTACACAGCAACTCAGTCAGTTCATGAGTAATCCCATGGATGTG CACTACAAAGCAGCACAAAGAGTCCTGAGTTACTTAAAAGGTTCACCAGGTTTAGGTCTCTTATTTCCGAGGAATTCTCC CTTGAGTATTCAAGGATATTCAGATGCTGATTGGGCAGGGTGCTCAGATACAAGGAGATCAATTTCAGGGTACTGTTTTT ATCTTGGCAGATCCTTAATATCTTGGAAAGCAAAGAAACAAACCACTGTGTCTCGTTCCTCAAGTGAAGCAGAATACAGG GCACTTGCTTATGCCACTTGTGAGCTTCAATGGCTGTTATATCTACTTCAAGATCTAAGAATCAAGTGCACCAAGTCACC TGCTTTGTTTTGTGACAACCAGAGTGCACTTTACATAGCTGCCAACCCGGTTTTTCATGAGAGGACGAAGCATTTGGAGA TTGATTGCCATGTAGTTAGAGAGAAACTGCAAGCTGGAGTTCTCAAGCTTTTACCTATTCCTACAACACTTCAAGTTGCA GATATTTTCACAAAAGCACTTCAGCCTCGGGTTTTTCAAGGGTTCATCACCAAGCTGGCCATGATAAACATTTTTCAACC TCCAGCTTGTGGGAGGGTGTAAAAATATAAGAGTTCAAGGACCAGTTCTGAGTAGAAACGAAGCACAGGGACTTGATTGT AAATGTTAGCAGTTAGTGCTTAATAGCTGAGCTGGCAAGTGGTTAGAGAGTTATAACAGAATTAGAGAGTTAGTTACAAG TTTGTTATGTTAAGCTTTGTTATAAATAGCTTTACCTTCTCATTCCAGTGTAAGATAAATCATTCAATTCAATATACAGA AA
CDS sequence (LotjaGi3g1v0353500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGAATCGCAACAATCACAACAACAATCAAGTTCCTCAGGTGGTTCTCGATCCTTCACAGAACCCAGGATCTCCGTA TTTCATTCATTCGAGTGATAATCCTTCTGCTACCATGGTGAATCCACCGTTGAATGGCAAGAATTACAACGCTTGGGCGA GGTCGATGAAGCGTGCGCTCGTGGCGAAGAACAAGTTTCGTTTCGTCAATGGCGAAATTCCGGTGCCGACTGCAACTGAT GCGAACTTTGAGGCATGGGATCGATGCAACAGTTTGATACACTCTTGGATCCTCAATTCGGTAACAACTTCAATTGCAAA TAGTATAGTATTTCTTGAAAATGCTTGTGATGCATGGAGAGATCTGAGAGATCGGTTTACTCAAGGTGATTTAGTGAGAA TTTCAGAATTGCATAGTGAGATTAGTAATCTGAAACAAAATTCATTGTCAGTGAATGAATATTACACAGAATTGAAAATT CTTTTGGAAGAATTGGAGAATTATCGGCCAATACCACAGTGTAGATGTGCTGTTCCTTGTAGATGTGATGCAATTGAGAA TGTAAAATTGTTCAGAGAGCAAGATAATGCAATCAGATTTCTCTTAGGGCTGAACGATAGTTTTGGAGTAGTGAAGTCTC AAATTTTGATGAGTTATCCTCTTCCATCTATTGCTAAGGTAGTATCCTTGGCAATACAACATGAGAGACAAACTGTTACA GAGGAAACAGGAGATTCATTAGCTATAGTGAATGCAGCAGAAGGGAAGAAGCCATATGGTAGAGGAACATCTGCTAATTC CAATTACAAGAATACTGGAAAATTTTGCACTCATTGCAAAAAGCCAGGGCACACTATTGAAATATGTTACAGGTTACATG GTTATCCAACCACTTTTAACACCAGATATGGTGCACAGAGTTCTAGTCATGTCAACAATACTGGTAGAAGTTATGATTCT TCTGATGATCAAGAGGATGATGCTTATTCACAGAGAGCTACTGAGGAGCCTTTCACTGCTGACCAGTACAAGAGGATAAT TGCCATGATACAGCAAGTTACTACAACTCCAAAGAAAGCACCAGATAGTAACAATGCTTCTGTGAATCATGTGATAAAAT CCACTGCCTATGAAGGAGAAACTACAAGACATGGATGTTCAAACCAAGAGGAAGATTGGTTTGGGTAG
Protein sequence (LotjaGi3g1v0353500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVNRNNHNNNQVPQVVLDPSQNPGSPYFIHSSDNPSATMVNPPLNGKNYNAWARSMKRALVAKNKFRFVNGEIPVPTATD ANFEAWDRCNSLIHSWILNSVTTSIANSIVFLENACDAWRDLRDRFTQGDLVRISELHSEISNLKQNSLSVNEYYTELKI LLEELENYRPIPQCRCAVPCRCDAIENVKLFREQDNAIRFLLGLNDSFGVVKSQILMSYPLPSIAKVVSLAIQHERQTVT EETGDSLAIVNAAEGKKPYGRGTSANSNYKNTGKFCTHCKKPGHTIEICYRLHGYPTTFNTRYGAQSSSHVNNTGRSYDS SDDQEDDAYSQRATEEPFTADQYKRIIAMIQQVTTTPKKAPDSNNASVNHVIKSTAYEGETTRHGCSNQEEDWFG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 30 | 76 | 47 | 5.4E-15 | ||
| PANTHER | 61 | 359 | 299 | 3.8E-68 | – | |
| PANTHER | 61 | 359 | 299 | 3.8E-68 | – | |
| Pfam | 93 | 194 | 102 | 6.0E-11 | ||
| MobiDBLite | 303 | 318 | 16 | - | – | |
| MobiDBLite | 303 | 337 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0353500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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