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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0354800 |
| Transcript ID | LotjaGi3g1v0354800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT3G15930.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930; TrEMBL-Plants: tr|I1KVG3|I1KVG3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0354800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:73656049..73658861) extracted from Lotus japonicus Gifu genome v1.2.
GTTTCATTGAAAAGTGGTAAGTAAGCATACAAAAATATTAAAGAAAATACGGAAACAATTTTAAGAAGAAAAAAATATAA ATCAGAGGCCACAAGGTTAAGGTTATGACACCTGCTCTTCTCGTGTTCTCCAATGTTGTTGGATTTAATGTTTGAAACTA TGTTGTTAATATTGTCTTGTCGGATTGGAGCAGACACATGAAGGAGCATAACTCATACATAGTTCATTGCTATGGTAGTT TGTGAGGTGACATGTTCTCCCTGTTTTGTTCCACATCTCACTTGTCTTTTCCTCTTCCAAGCTCGACACTTTCACTTTCG TGGTTCCTCAAGAGACTGATTACTAATGCTCCTGCTATTACTGCTAAGTGTTATTCTTCACACTGTGACCCTCATTGCTT TGGTGAAACTCCAATCTCTTTGCTTGAAAGATGCAAGTCCACGTACCAGCTAAAGCAAATTCACTCAAAGACAATCAAAA TGGGTCTCTCTTCAGACCCTGTGTTTGGAAATAAAGTTATAGCCTTCTGTTGTACCCAGGAATCAGGGGATGTTGACTAT GCTCGCCAGGTGTTTGACACAATCCCTCACCCAAGTGTCTTCATTTGGAATACCATGATCAAGGGCTATTCTAGGATAAG CTGTCCTAAGAGTGGAATTTCTATGTATCTACTGATGTTGGCCCATAACATCAAGCCTGATAGTTTTACATTTCCATTCT TGTTGAAGGGCTTCACCAATGATATGGCTTTGAAGTTTGGGAAAGTGTTACTTGATCATGCAGTGAAACTTGGGCTTGAT TCTAATTTGTTTGTTCAAAAGGCTTTCATACACTTGTTTTCCTTGTGCGGGCTAGTGGATCTGGCTCACAAAATTTTCAA TATGGGTGATGCATGGGAAGTGGTAACCTGGAATGTAATGCTATCTGGATATAACAGAGTTAAGCTATTTGAGAAATCAA AGAAGCTTTTTTTTGAGATGGAGAAGAAAGGTGTATCACCCAATTCAGTTACTTTAGTTTTGATCCTTTCAGCATGCTCC AAATTGAAGGATTTAGATGGAGGCAATTACGTTTATAAGTATATCAAAGAAGGTATTGTTGAGCCTAATCTTGTAATGGA AAATGTCTTACTTGATATGTTTGGAGCTTGTGGAGAAATGGATGCTGCAAAAGGTGTTTTTGACAATATGAAGACTCGAG ATGTAATTTCTTGGACTTCCATTGTTAGCGGATTTGCCAATACCGGCCAAATTGATTTAGCACGGAAGTATTTTGATCAA ATGCCTGAAAGAGATTATGTTTCTTGGACTGCTATGATTGATGGCTACCTTAGAATGAACCATTTCAGAGAGGCTTTGGC ACTTTTCCGTGAGATGCAGATGTCACATGTGAAACCAGATGAATTCACCATGGTTAGCATTCTAACAGCCTGTGCGCACC TGGGAGCACTTGAGCTAGGGGAATGGGTAAAGACTTACATTGACAAAAACAAGATTAATAATGACACTTTCATTGGGAGT GCTCTAATAGACATGTACTTCAAATGTGGGAATGTTGAGAAAGCAAGAAAAACATTCAAGGAAATGCATCAGAAAGACAA ATTTATCTGGACGGCGATGATTGTTGGTCTCGCCATTAATGGTCATGGTGAAGAAGCTCTTACTATGTTTTCAAATATGA TAGAATCTTCAATCACACCAGATGATATAACTTATATTGGTGTCCTGAGTGCTTGCACACACGCCGGCATGGTAGAAAAA GGAAGAAAGTTTTTTGCTAGCATGACCATCCAACATGGAATTAAGCCTAATGTGACTCATTATGGATGCATGGTTGACCT ACTTAGTAGAGCTGGGCATTTAAAAGAAGCCCTTGATGTCATTTTGAATATGCCTGTGAAGCCAAATTCAATTGTTTGGG GATCTCTTCTTGGTGCTTGCAGAGTTCACAAAAATGTTGAACTCGCAGAAATGGCAGCTAAACAAATAATTGAGTTAGAG CCTGAAAATGGGTCTGTTTATGTCCTGTTATGTAACATATATGCTGCATGCAAGAGATGGGAAAACTTGCGTGAAGTCAG GACAATTATGATGGAGAGGGGAATTAAGAAAACACCAGGTTGCAGTTTGATGGAAATGAATGGCATTGTCTATGAGTTTG TTGCTGGGGACCAGTCACATCCTCAGTCTAAAGAAATATATGCGAAGTTGGAAAACATGATGCAAGATTTGACAAATGCA GGGTACTCGCCTGATACATCAGAGGTTTTCCTTGATATAGGAGAAGAGGATAAGGAGACTGCACTTTTCCGGCATAGCGA GAAGTTGGCTATTGCCTATGCCCTTATTAGTTCAGGACCTGGGGTTACCATAAGAATAGTGAAGAACCTTAGAATGTGTG TAGATTGTCACCAGATGGCAAAGCTGGTGTCAAAGGCTTACAATAGGGAACTAGTAGTTAGGGATAAAACCAGATTCCAT CATTTCAGGCATGGTGTATGTTCATGTAATAATTTCTGGTAAACTTTTTAACGAGATTCCCCCCATGAATTGTAGAAGTT TCGAGCCTTGTGTATGGAGAAAAAAAACACCGCCGGGAGAGCTAGTCCATGAGAATGTGAATATGCCTCTGTTGGATAAA AAATGATCCAGAACTAGAAGAGGAGTACCTACAAGTAGCAAGTTCTGATTACATTGAAGTATAAATTTTTCATTTTCTTG CTTTGGTAAGTCATTCGCCTATTTAGATCTTAATTTCATCATTTGTACATTATAGATAACAAAAATTATTCCATTTTATC ATAATTCACAGAT
CDS sequence (LotjaGi3g1v0354800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCTCCCTGTTTTGTTCCACATCTCACTTGTCTTTTCCTCTTCCAAGCTCGACACTTTCACTTTCGTGGTTCCTCAA GAGACTGATTACTAATGCTCCTGCTATTACTGCTAAGTGTTATTCTTCACACTGTGACCCTCATTGCTTTGGTGAAACTC CAATCTCTTTGCTTGAAAGATGCAAGTCCACGTACCAGCTAAAGCAAATTCACTCAAAGACAATCAAAATGGGTCTCTCT TCAGACCCTGTGTTTGGAAATAAAGTTATAGCCTTCTGTTGTACCCAGGAATCAGGGGATGTTGACTATGCTCGCCAGGT GTTTGACACAATCCCTCACCCAAGTGTCTTCATTTGGAATACCATGATCAAGGGCTATTCTAGGATAAGCTGTCCTAAGA GTGGAATTTCTATGTATCTACTGATGTTGGCCCATAACATCAAGCCTGATAGTTTTACATTTCCATTCTTGTTGAAGGGC TTCACCAATGATATGGCTTTGAAGTTTGGGAAAGTGTTACTTGATCATGCAGTGAAACTTGGGCTTGATTCTAATTTGTT TGTTCAAAAGGCTTTCATACACTTGTTTTCCTTGTGCGGGCTAGTGGATCTGGCTCACAAAATTTTCAATATGGGTGATG CATGGGAAGTGGTAACCTGGAATGTAATGCTATCTGGATATAACAGAGTTAAGCTATTTGAGAAATCAAAGAAGCTTTTT TTTGAGATGGAGAAGAAAGGTGTATCACCCAATTCAGTTACTTTAGTTTTGATCCTTTCAGCATGCTCCAAATTGAAGGA TTTAGATGGAGGCAATTACGTTTATAAGTATATCAAAGAAGGTATTGTTGAGCCTAATCTTGTAATGGAAAATGTCTTAC TTGATATGTTTGGAGCTTGTGGAGAAATGGATGCTGCAAAAGGTGTTTTTGACAATATGAAGACTCGAGATGTAATTTCT TGGACTTCCATTGTTAGCGGATTTGCCAATACCGGCCAAATTGATTTAGCACGGAAGTATTTTGATCAAATGCCTGAAAG AGATTATGTTTCTTGGACTGCTATGATTGATGGCTACCTTAGAATGAACCATTTCAGAGAGGCTTTGGCACTTTTCCGTG AGATGCAGATGTCACATGTGAAACCAGATGAATTCACCATGGTTAGCATTCTAACAGCCTGTGCGCACCTGGGAGCACTT GAGCTAGGGGAATGGGTAAAGACTTACATTGACAAAAACAAGATTAATAATGACACTTTCATTGGGAGTGCTCTAATAGA CATGTACTTCAAATGTGGGAATGTTGAGAAAGCAAGAAAAACATTCAAGGAAATGCATCAGAAAGACAAATTTATCTGGA CGGCGATGATTGTTGGTCTCGCCATTAATGGTCATGGTGAAGAAGCTCTTACTATGTTTTCAAATATGATAGAATCTTCA ATCACACCAGATGATATAACTTATATTGGTGTCCTGAGTGCTTGCACACACGCCGGCATGGTAGAAAAAGGAAGAAAGTT TTTTGCTAGCATGACCATCCAACATGGAATTAAGCCTAATGTGACTCATTATGGATGCATGGTTGACCTACTTAGTAGAG CTGGGCATTTAAAAGAAGCCCTTGATGTCATTTTGAATATGCCTGTGAAGCCAAATTCAATTGTTTGGGGATCTCTTCTT GGTGCTTGCAGAGTTCACAAAAATGTTGAACTCGCAGAAATGGCAGCTAAACAAATAATTGAGTTAGAGCCTGAAAATGG GTCTGTTTATGTCCTGTTATGTAACATATATGCTGCATGCAAGAGATGGGAAAACTTGCGTGAAGTCAGGACAATTATGA TGGAGAGGGGAATTAAGAAAACACCAGGTTGCAGTTTGATGGAAATGAATGGCATTGTCTATGAGTTTGTTGCTGGGGAC CAGTCACATCCTCAGTCTAAAGAAATATATGCGAAGTTGGAAAACATGATGCAAGATTTGACAAATGCAGGGTACTCGCC TGATACATCAGAGGTTTTCCTTGATATAGGAGAAGAGGATAAGGAGACTGCACTTTTCCGGCATAGCGAGAAGTTGGCTA TTGCCTATGCCCTTATTAGTTCAGGACCTGGGGTTACCATAAGAATAGTGAAGAACCTTAGAATGTGTGTAGATTGTCAC CAGATGGCAAAGCTGGTGTCAAAGGCTTACAATAGGGAACTAGTAGTTAGGGATAAAACCAGATTCCATCATTTCAGGCA TGGTGTATGTTCATGTAATAATTTCTGGTAA
Protein sequence (LotjaGi3g1v0354800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFSLFCSTSHLSFPLPSSTLSLSWFLKRLITNAPAITAKCYSSHCDPHCFGETPISLLERCKSTYQLKQIHSKTIKMGLS SDPVFGNKVIAFCCTQESGDVDYARQVFDTIPHPSVFIWNTMIKGYSRISCPKSGISMYLLMLAHNIKPDSFTFPFLLKG FTNDMALKFGKVLLDHAVKLGLDSNLFVQKAFIHLFSLCGLVDLAHKIFNMGDAWEVVTWNVMLSGYNRVKLFEKSKKLF FEMEKKGVSPNSVTLVLILSACSKLKDLDGGNYVYKYIKEGIVEPNLVMENVLLDMFGACGEMDAAKGVFDNMKTRDVIS WTSIVSGFANTGQIDLARKYFDQMPERDYVSWTAMIDGYLRMNHFREALALFREMQMSHVKPDEFTMVSILTACAHLGAL ELGEWVKTYIDKNKINNDTFIGSALIDMYFKCGNVEKARKTFKEMHQKDKFIWTAMIVGLAINGHGEEALTMFSNMIESS ITPDDITYIGVLSACTHAGMVEKGRKFFASMTIQHGIKPNVTHYGCMVDLLSRAGHLKEALDVILNMPVKPNSIVWGSLL GACRVHKNVELAEMAAKQIIELEPENGSVYVLLCNIYAACKRWENLREVRTIMMERGIKKTPGCSLMEMNGIVYEFVAGD QSHPQSKEIYAKLENMMQDLTNAGYSPDTSEVFLDIGEEDKETALFRHSEKLAIAYALISSGPGVTIRIVKNLRMCVDCH QMAKLVSKAYNRELVVRDKTRFHHFRHGVCSCNNFW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 11 | 11 | - | – | |
| Phobius | 4 | 15 | 12 | - | – | |
| Phobius | 16 | 23 | 8 | - | – | |
| Phobius | 24 | 756 | 733 | - | – | |
| Gene3D | 35 | 172 | 138 | 6.4E-14 | ||
| PANTHER | 52 | 165 | 114 | 1.2E-115 | – | |
| ProSiteProfiles | 82 | 114 | 33 | 5.097 | ||
| Pfam | 114 | 162 | 49 | 8.6E-8 | ||
| ProSiteProfiles | 115 | 149 | 35 | 9.591 | ||
| TIGRFAM | 118 | 151 | 34 | 1.1E-5 | ||
| ProSiteProfiles | 150 | 184 | 35 | 5.371 | ||
| PANTHER | 173 | 281 | 109 | 1.2E-115 | – | |
| Gene3D | 173 | 294 | 122 | 2.9E-18 | ||
| ProSiteProfiles | 216 | 250 | 35 | 12.167 | ||
| Pfam | 217 | 263 | 47 | 1.3E-10 | ||
| TIGRFAM | 218 | 251 | 34 | 3.2E-8 | ||
| ProSiteProfiles | 251 | 285 | 35 | 7.169 | ||
| ProSiteProfiles | 286 | 316 | 31 | 7.662 | ||
| PANTHER | 289 | 345 | 57 | 1.2E-115 | – | |
| Pfam | 291 | 317 | 27 | 0.047 | ||
| Gene3D | 295 | 411 | 117 | 7.6E-30 | ||
| ProSiteProfiles | 317 | 347 | 31 | 9.832 | ||
| TIGRFAM | 319 | 349 | 31 | 3.1E-5 | ||
| SUPERFAMILY | 330 | 604 | 275 | 3.38E-7 | ||
| PANTHER | 332 | 404 | 73 | 1.2E-115 | – | |
| ProSiteProfiles | 348 | 382 | 35 | 12.134 | ||
| Pfam | 348 | 395 | 48 | 4.1E-12 | ||
| TIGRFAM | 350 | 384 | 35 | 8.5E-9 | ||
| ProSiteProfiles | 383 | 417 | 35 | 5.404 | ||
| PANTHER | 405 | 614 | 210 | 1.2E-115 | – | |
| Gene3D | 412 | 651 | 240 | 2.1E-42 | ||
| ProSiteProfiles | 418 | 448 | 31 | 8.966 | ||
| Pfam | 423 | 448 | 26 | 8.7E-5 | ||
| TIGRFAM | 424 | 448 | 25 | 4.2E-5 | ||
| ProSiteProfiles | 449 | 483 | 35 | 10.369 | ||
| Pfam | 449 | 495 | 47 | 2.6E-8 | ||
| TIGRFAM | 452 | 484 | 33 | 9.7E-6 | ||
| ProSiteProfiles | 484 | 519 | 36 | 9.032 | ||
| TIGRFAM | 486 | 521 | 36 | 4.6E-5 | ||
| ProSiteProfiles | 520 | 550 | 31 | 7.618 | ||
| Pfam | 523 | 547 | 25 | 0.11 | ||
| ProSiteProfiles | 552 | 582 | 31 | 5.086 | ||
| ProSiteProfiles | 586 | 620 | 35 | 7.333 | ||
| Pfam | 622 | 746 | 125 | 3.2E-41 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi3g1v0354800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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