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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0357600 |
| Transcript ID | LotjaGi3g1v0357600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Coatomer subunit zeta; TAIR: AT1G15370.1 SNARE-like superfamily protein; Swiss-Prot: sp|Q9MAX5|COPZ1_ORYSJ Coatomer subunit zeta-1; TrEMBL-Plants: tr|I3S581|I3S581_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0357600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:73964250..73967988) extracted from Lotus japonicus Gifu genome v1.2.
CTAAAAACAAAACATATAATTTTGGGACGATGTTAAACAAGACAAATATTTTCTAGAGACAAAAAACAGAAATGATGTAT TTTGCAAGAATCAAAACTCATTTAAGCAAAAAAAAAAAGTTAAATAATTTAATTAAATAATTGGGATAGGTTCAAGATCT TGAACAAGAGGGAAAGGCAGAGGGAATCAGAAGTGTAGAGAGCAGAAGATGATTCTTGCAGTGCTGTTTGCCAACGCTGA AGGCAACATCCTCATCGAACGGTGCGTTCAGATCTCTCTCTTCTTCCCATTTTCACTTCTCAGTTTTGTTGGGTGCTTTT TATTTCCCATTCGCTTGAAACAGCTCAATTTTCTGATGGTACGATCTCAAAATTTGATTTTGCGGATCGATTCGTGTTAT TTTCTATTGAATCGAAAATGGGTCTGTCTTAGAATTTGTTAGGATGTAGTAGCAGCCATTGTTGTTGTCATATGAAACAA TTTGAAGGGTTTGCATTTTTCTTACAGTACTATGATTAAGAATTAATCTAATTTTGAACTGTTTCTGAGGTATTAGTAAT GCTTTGTACATGTTTGAAGAACCTCTTTGATTGGGTATTATTAGGACATCAATTTGAAAATTATAATCACTTTGTTGATG CTGTTGTGCTGGTAAACATAATGCCTTACATGATTGCAGTTTTCATGGAGTTCCTGCCGAGGAACGCCTACATTGGCGTT CGTTCTTGGTTAAACTTGGAGCTGATAATCTTAAAGGTGTCAAAAATGAAGAGCTCCTAGTTGCTTGCCACAAGTCAGTA TACTCTTATCTTATGCTATTTATCGCATCTCATGCCTTGAAATGTTATGTATCTATGGAAAATGGATGCCTATGTGAATA GAATAGCCATAGTTAAGGGCATTGAGGTATAGTTTCTGAAAACGCCTCGGAGGATTGAATTTGAACATTGGTTCCTACTA GTAATGTTGCAGATAAGCTACATGGACTGTTGAACATGAACTCTTTTATTTGAAACTGAGAACTTATGGACTGCGGTTAG TTCTCCAGTAGCATTGTTTAGTGAAAGAAAGATTAACAAGCTGAATAACATTAGTTACTAGAATAGACCTATTATTTGGC AGAACAACGTTTTCAGATGGTGTAGTTGGTACTGTGGGAATATTGGACATGAAATTTCACAGGAAGCTAAATGTATAAAC ACTCACATGCAAACTTGGTCCATGATGTTTTGCAGGTTTGCATAACTAGAATCATTATTCACCATAATCAGAAGTCTGAC TAGAAACAAGTTCCTCTAAAATTTTATCTAGAAACAAGTTCCTCTAAGTTTTATCTTTTGTTTCATTATCAACTATTGTT CATTCATATTCCCTGTTCTAGTTTTTTTTTTTGCCTCATCCTTATATGATGTTGTAATATTTGACTTATACGTTTTCTTT GTCTCAGGTCAGTTTATATCGTATACACAGTGCTTGGGGACGTCAGCATCTATGTTGTGGGCAAGGATGAGTATGACGAA CTTGCCTGTATGTATTTGTGGAATTGATATTTTATTTTTGCTGATAATTAAATTAATGTATAGAAATGAGTCATCTCAGC TTGACATGGATATGCCTAACTAATTACACTAGTTACTGGGCTTGTTTATTTGGGTTGCTAACTTGCTACTTATAAGCGGG ATAAACAGTTACATGTGGGCATAAAAATAAAAGATCATTTCTGAAGAAGGAGATTTGAAAAGTGAAAAGTGAAAAGTCAG ATGATCATGGGAGTTAAGAGGAAAAGTAGTAGAACTAATGGTGGAGTAAAATAAGGGTTGTGGAAAGACAGAATTGAATG TAATTATTGAAAAACTGAATTTCATTTTACACGTATTCTTGTACATAACCATGTGATCTTTGTTAGTTTGGCTAACAAAC AATATGAAATCAGAATTTGTTGGATAAAAAGTAAAGACAGGAAACTTTCCTATTTATGTAATAGTAGAGATATTAGCTAT TGCACAGGATTGTAACAAACATTTCAACAATGTTATAGTTTGAGAAACTAGCAGTCATGTTTTTGTCTTGCTTACCTTGG AAAAAAGTAGAAATATTAAAAGAAATAAAGGTTATTTTAGTGACATGTGATGGTATCAGCCTTTTAACACTGCTTTATTT CACCAAGAGCTGGAGAATGCATGTTTGCAATAGCGTTGTGTGCTTTACCATTTAAATTTCTACTGCTATTTACTGATGTT ATGTTTTTCTCTAGTGTCAGAAGTGATCTTTGTGATAACCTCAGCTGTGAAGGATATATGTGGGAAGCCCCCAACTGAGC GCGTTTTCCTCGACAAGTATGGAAGAATTTGCTTGTGTTTGGATGAAATTGTATGGAAGGTAAGTAGGCATGCAGAACGA TTTCAATTATACCAAATAATGAAAGCTATTTTTAATTTTTCCTTTCACTTTACTCAATCTGCTCCCCCTGAAACTCATCA ATCAATGACTTTCATGTGATAATACCCATAGACATTGCCCTTTTATTTACATAGTTATAAATACTATGATTGATGTCATC TATTTTGTATTGTTTTTTGTTACAGTTCTGATTTTTAGACACGCCCTATAAACACTTCATTTTACTCTCTATCTCTTTGT TCCTATCACATCACATCATATATCACATTTGTCACTTATCTCTCATGTCTTCCTTTCTCTTTCATTTTAATTTGGGCGTA AGGGGAGTCTACACAACATTTTCCTCTCTTTATGGGTGTGATGTGTACCCTTAATGTTGGGGGAATACAATCCACCTGCA TGTCCTTATTAGGATGCCTTTTTTCTAATAATGCTCCACGCATCTTCTTAAAATTTAAGGATCAAGGAAAAACTTTACAT CAATTGAATCCTTCCTTTAACCTATTTACTACATTCGTCGCTTAACCAAACTTATCCAACTACCCTGTGACGGGCGAATT TCTTCTTGATGCTTTTCTTGACATTTTTCCTGTGCATGTTTTGTAGGGATATTTGGAAAATACAGAAAATGATAGAATCA AAAGACTGCTAAGGTTAAAGCCTCCAACAGAGTTTTGAATGAGAAGTCCTTAGCCAGTCATAGTTCAATGACACTACTCT GGATCATAAATGGCATTTGCCGTTTTGCTCTGGATATCTGGTCCTAGCTTTGCACTGTGACTTTCATTCAGGTGGTTTCC CTTTCTATATAGGGAAGGATTATGTTGGGCTAATACTTGTATTCAAATCTTCTCAATTTTCAACACTTGTATTTTATAGC ATTTCAAAAGGATGTCCCTGATGCTGCCTAATGTACAATGTGCTTTAAATTTCTTTTTAGTTCCTTTTATCACATGTATA CTGTTTGTTATGGCAATCATGTTTCTACTTGTTCTATGGAGCGAGAGATTTTCACGCTTGGATAGAAAAATGTTTCCTTC AAATGGTAGAGCAACCCTCTCCTCAAAACTAGCTTTCGAAGTAGAGTTAAACCTAACCAAATTCTAAGAAAAATGGTGTC GTGGAGGGAGGCTGCAAAAAAGTAGATTGAGATTGGGGCTTTTGAATACCGCAATAGTGATGGAGGAGGATCATTGGTTT GGGATTGAGGCTTTTGAAAATAGCAACATTGATGAAGGAAGTGGTGGGTTTCTAATTTAATTTATATAGAGATAACTAAA AATAAGCTCATGTAAATTGTTACTTGCAATAGCAAGTAAAGCCATGGTTTATAGGTGAA
CDS sequence (LotjaGi3g1v0357600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTCTTGCAGTGCTGTTTGCCAACGCTGAAGGCAACATCCTCATCGAACGTTTTCATGGAGTTCCTGCCGAGGAACG CCTACATTGGCGTTCGTTCTTGGTTAAACTTGGAGCTGATAATCTTAAAGGTGTCAAAAATGAAGAGCTCCTAGTTGCTT GCCACAAGTCAGTTTATATCGTATACACAGTGCTTGGGGACGTCAGCATCTATGTTGTGGGCAAGGATGAGTATGACGAA CTTGCCTTGTCAGAAGTGATCTTTGTGATAACCTCAGCTGTGAAGGATATATGTGGGAAGCCCCCAACTGAGCGCGTTTT CCTCGACAAGTATGGAAGAATTTGCTTGTGTTTGGATGAAATTGTATGGAAGGGATATTTGGAAAATACAGAAAATGATA GAATCAAAAGACTGCTAAGGTTAAAGCCTCCAACAGAGTTTTGA
Protein sequence (LotjaGi3g1v0357600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MILAVLFANAEGNILIERFHGVPAEERLHWRSFLVKLGADNLKGVKNEELLVACHKSVYIVYTVLGDVSIYVVGKDEYDE LALSEVIFVITSAVKDICGKPPTERVFLDKYGRICLCLDEIVWKGYLENTENDRIKRLLRLKPPTEF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 147 | 147 | 4.8E-86 | – | |
| Gene3D | 1 | 142 | 142 | 1.6E-17 | – | |
| SUPERFAMILY | 1 | 143 | 143 | 1.88E-18 | ||
| PANTHER | 1 | 147 | 147 | 4.8E-86 | ||
| CDD | 60 | 125 | 66 | 4.18935E-5 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Retrograde vesicle-mediated transport, Golgi to ER | The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG. | ||
| Cellular component | COPI vesicle coat | One of two multimeric complexes that forms a membrane vesicle coat. The mammalian COPI subunits are called alpha-, beta-, beta'-, gamma-, delta-, epsilon- and zeta-COP. Vesicles with COPI coats are found associated with Golgi membranes at steady state. |
Expression pattern of LotjaGi3g1v0357600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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