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IPR039652

Source: InterPro

Description

IPR039652 is a Coatomer subunit zeta.

<p>Coatomer (COPI) is a cytosolic protein complex that coats Golgi-derived transport vesicles. It consists of seven subunits (alpha-, beta-, beta'-, gamma-, delta-, epsilon-, and zeta-COP) and is involved in retrograde transport between Golgi and ER [[cite:PUB00089911]]. This entry includes the zeta subunit, which may be involved in regulating the coat assembly [[cite:PUB00089911]]. This entry also includes TSET complex member tstD from Dictyostelium discoideum (Slime mold). TSET is a membrane trafficking complex [[cite:PUB00091328]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006890
Biological process Retrograde vesicle-mediated transport, Golgi to ER The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG.
Subterm of
GO:0030126
Cellular component COPI vesicle coat One of two multimeric complexes that forms a membrane vesicle coat. The mammalian COPI subunits are called alpha-, beta-, beta'-, gamma-, delta-, epsilon- and zeta-COP. Vesicles with COPI coats are found associated with Golgi membranes at steady state.
Subterm of
Part of

Associated Lotus transcripts 9

Transcript Name Description Predicted domains Domain count
LotjaGi1g1v0499100.1
– Coatomer subunit zeta; TAIR: AT4G08520.1 SNARE-like superfamily protein; Swiss-Prot: sp|Q8H1F4|COPZ3_ARATH Coatomer subunit zeta-3; TrEMBL-Plants: tr|A0A151SUF4|A0A151SUF4_CAJCA Coatomer subunit zeta-3; Found in the gene: LotjaGi1g1v0499100
Domains
9
LotjaGi1g1v0499100.2
– Coatomer subunit zeta; TAIR: AT4G08520.1 SNARE-like superfamily protein; Swiss-Prot: sp|Q8H1F4|COPZ3_ARATH Coatomer subunit zeta-3; TrEMBL-Plants: tr|A0A151SUF4|A0A151SUF4_CAJCA Coatomer subunit zeta-3; Found in the gene: LotjaGi1g1v0499100
Domains
9
LotjaGi3g1v0357600.1
– Coatomer subunit zeta; TAIR: AT1G15370.1 SNARE-like superfamily protein; Swiss-Prot: sp|Q9MAX5|COPZ1_ORYSJ Coatomer subunit zeta-1; TrEMBL-Plants: tr|I3S581|I3S581_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0357600
Domains
7
LotjaGi3g1v0422300.1
– Coatomer subunit zeta; TAIR: AT4G08520.1 SNARE-like superfamily protein; Swiss-Prot: sp|Q8H1F4|COPZ3_ARATH Coatomer subunit zeta-3; TrEMBL-Plants: tr|A0A151SHM4|A0A151SHM4_CAJCA Coatomer subunit zeta-2; Found in the gene: LotjaGi3g1v0422300
Domains
9
LotjaGi3g1v0422300.2
– Coatomer subunit zeta; TAIR: AT3G09800.1 SNARE-like superfamily protein; Swiss-Prot: sp|Q84LG4|COPZ2_ARATH Coatomer subunit zeta-2; TrEMBL-Plants: tr|A0A151SHM4|A0A151SHM4_CAJCA Coatomer subunit zeta-2; Found in the gene: LotjaGi3g1v0422300
Domains
9
LotjaGi3g1v0422300.3
– Coatomer subunit zeta; TAIR: AT3G09800.1 SNARE-like superfamily protein; Swiss-Prot: sp|Q84LG4|COPZ2_ARATH Coatomer subunit zeta-2; TrEMBL-Plants: tr|A0A151SHM4|A0A151SHM4_CAJCA Coatomer subunit zeta-2; Found in the gene: LotjaGi3g1v0422300
Domains
9
LotjaGi3g1v0422300.4
– Coatomer subunit zeta; TAIR: AT3G09800.1 SNARE-like superfamily protein; Swiss-Prot: sp|Q84LG4|COPZ2_ARATH Coatomer subunit zeta-2; TrEMBL-Plants: tr|A0A151SHM4|A0A151SHM4_CAJCA Coatomer subunit zeta-2; Found in the gene: LotjaGi3g1v0422300
Domains
9
LotjaGi6g1v0276600.1
– Coatomer subunit zeta; TAIR: AT1G60970.1 SNARE-like superfamily protein; Swiss-Prot: sp|Q6Z844|COPZ2_ORYSJ Coatomer subunit zeta-2; TrEMBL-Plants: tr|I3TAJ3|I3TAJ3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0276600
Domains
9
LotjaGi6g1v0276600.2
– Coatomer subunit zeta; TAIR: AT1G60970.1 SNARE-like superfamily protein; Swiss-Prot: sp|Q6Z844|COPZ2_ORYSJ Coatomer subunit zeta-2; TrEMBL-Plants: tr|I3TAJ3|I3TAJ3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0276600
Domains
9

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
cd14829 CDD 1 11.11