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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0368100 |
Transcript ID | LotjaGi3g1v0368100.3 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Peroxisome biogenesis protein 2; TAIR: AT1G79810.1 Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|Q9CA86|PEX2_ARATH Peroxisome biogenesis protein 2; TrEMBL-Plants: tr|A0A151SHE5|A0A151SHE5_CAJCA Peroxisome assembly protein 2; Found in the gene: LotjaGi3g1v0368100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:75447861..75450699) extracted from Lotus japonicus Gifu genome v1.2.
TTCATATCCGTTTTTCCTCCTTCATATTGACTATTAGTTACTGGGTCTTCTTTATTTCGGAAAATTCTTCCCCTTATTGA TAGAAAAATTGTTTTTTTCACACTTTCCCTCTTTTTTATAGTAGAAGCTTCCGTTCCCTATGGAATTTACTAGAGGGGTA TCCTGAATTTCTGCTGGAATCAGGGGGATATATAATTTGATATGATTTTTATTTGAAATCGGAAGTTTTGTATTTGATCA AGTTGCATATAGTGTGTTTGCTGTTGATTAAATTGTTATATCTGTGTGGGATTTTTCTGCAGTCGACGATCCCGGTTACT ATATCAAGAGTTAACCAAGTTGATGCAGCGAGATTGGACGTTGAAATGTCTGCCATGTTGAAAGAGCAGTTGGTTAAAGT GTTTGCTTTGATGAAGGTACGGTTATGACTTACTTTGTAATTGTGTGAAATGAGTCGTTGTGGTAATGGTGCTGCTGATT TGAAACTGGTTTGGACATCTTTAAAGTGTTCTTTTGTGTTTTTTGGGATTAGCCAGGAATGTTATTTCAGTATGAAGCTG AGCTTGATGCTTTCCTCGAGTTTCTTATTTGGCGGTTTTCAATTTGGGTGGATAAGCCAACTCCAGGCATTGCTCTCATG AACCTCAGGTACAGAGACGAGCGTGCGGTTGAATCGAGAGATAAAGGTAAGAAGGTCTGAATCTCATCTGTCTAAGCAGG TCTTCGATGTTGTGAGATGGTCTTGAATTCTAAGGATTATTTGATAAGTTTTATGGGTTAAACACAAAGAATTAACTTTT TGTAGCACACCAGCTATTGTCTGCATTACAAGCATTATGATTGATGTGCCCTGAATTAAGCGTAGTTCATGCCTTGAATA AGAAAGTTTCACTTACACGTGTTCAAACTTGACCCTCGAGTCTTTGCTGTATAAATTTTCAGTTTGACCTTAAATAATGA ATATGCACATCATCCGTGATTATTTGTACTCTGCATCATTGTTATACAGCACACTGATAAAAGTTTGAAAAATATTATTT CATGAGATGCTTCTTTGCTTTAACAAATCGATAGCATAGAGGAAGTACTTTTTTTTCATCTGTTACTACTGCATATATAC TTTGAGTGGGGTTTCGTTCATCCTAACTTCTCATTTGTCTGTGGTATATTCCACAGTCAGAACTGGTCTGGAGGGACCAG GACTCACAGTGGCTCAGAAACTTTGGTATTGTATTGCTACTGTTGGTGGTCAGTATATCTGGGCTCGTTTACAATCCTTC TCTGCATTTCGTAGATGGGGTGATACTGAGCAGGTAAATTTTTAAGTTGGTCCTTTCAATCCATACACTGCCCAACTTGC AAGCCTATAGGCCATAGTGGATAAAAGTGAGCTCTAACCTGAACTTAATTCTTTTCCAGAGACCATTAGCACGGCGTTTA TGGATCTTCATACAACGGATAGAAGGCATTTATAGAGCTACTTCATTTGGAAACTTGTTGATATTTCTTTGCACGGGAAG GTGATTATTCAACAACCAGACAATCCACTCAGTTTGTGTCGTTCAATCATCTCCTATTTATGTATAAAGTTTTCAACCAT ATAATTGGCGGCATTTAGATTGAATCAGCTGCCCTAGAATTAGACTATCTCATGATTGATTTGCTCTGCTAAAATATATT TTCTTCTTGTGTGCTACTCTGATGCAGATACCGAAATCTTATTGAAAGAGCCTTACGAGCTAGGCTTGTGTATGGGAGCC CAAATATGAATCGTGCTGTTAGCTTTGAGTATATGAACAGACAGTTAGTTTGGAATGAATTCTCGGTACCTTCCCCACCT CTTAATCAAATTTATTTGCTCTTTTAGTTTGTGGAATCTTATGGTTATGGGTTACATGAGATCAGGTCATTGTGCTATGT ACTTTGAAAATCTCTTAAGACAGTTTATTTGCTTTGAATTCTTTTGTGTTGGGCACTATGCATTGTTTACCAGTTTCTTC TTATAATACTGGGAAATGTTATCAATCTTAGCTATTCAGTTTTCAATGAATCTGAGGTTCTGTTCGTTCTTCTGCTTGAA GTGTGCTGATACCTGTGTGATGATTCATTGATTAAATTAATCCCAGGCTGAAACACTCATCATATAATCATTCCCGTTAC TAAATGTTTGCTACATATTCAGAATTCTATTATTTCTTGTAGATATTTTATGACATTGGGAACAGCTGGTTGATATCTCG CAAATAGATTTCTCCCTCTGGATTTGATGTCAAATGAATTTACAAGAATGTTTCGATTCTGATTTTGTAACGATTTGGAA CTAATTATGCCCTGTTCTGATGGCAGGAAATGTTATTGTTGCTTCTTCCTCTTCTTAATTCATCATCTGTGAAAAATCTC CTTAAACCTTTTTCTAAGGATAAATCGTCAAGCTCAGCCGAGGATGGCACAATATGTCCCATTTGCCAGGCTACTCCAAC CATTCCTTATGTTGCTATACCCTGTCATCACATGTACATCTCTAGCAAGATATGCACTCTCATGTCATTTTATTTTTCGC CTGTTGAAGCTTTTTACTGGGCATTGCTTTTGGTAATTTGTTAGAACTTAATAGCAATGGAATGTTTGTAGATGTTAGCT TTTATGTATGCAATCTTCAACAGAAGATGATTTTCATTGAAAGAGAAGGGCTTAAGCACTGATTTGCAAATTTCTTTGTG CCAGATATTGTTACTATTGTCTTCGGACACGATGTGCTGCTGCCCCATCATTTAGGTGTTCCAGGTGCAGTGAGCCAGTT GTTGCTATGCAACGCCATAGCGGTGTCTCCACAGAATGA
CDS sequence (LotjaGi3g1v0368100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGCCATGTTGAAAGAGCAGTTGGTTAAAGTGTTTGCTTTGATGAAGCCAGGAATGTTATTTCAGTATGAAGCTGA GCTTGATGCTTTCCTCGAGTTTCTTATTTGGCGGTTTTCAATTTGGGTGGATAAGCCAACTCCAGGCATTGCTCTCATGA ACCTCAGGTACAGAGACGAGCGTGCGGTTGAATCGAGAGATAAAGTCAGAACTGGTCTGGAGGGACCAGGACTCACAGTG GCTCAGAAACTTTGGTATTGTATTGCTACTGTTGGTGGTCAGTATATCTGGGCTCGTTTACAATCCTTCTCTGCATTTCG TAGATGGGGTGATACTGAGCAGAGACCATTAGCACGGCGTTTATGGATCTTCATACAACGGATAGAAGGCATTTATAGAG CTACTTCATTTGGAAACTTGTTGATATTTCTTTGCACGGGAAGATACCGAAATCTTATTGAAAGAGCCTTACGAGCTAGG CTTGTGTATGGGAGCCCAAATATGAATCGTGCTGTTAGCTTTGAGTATATGAACAGACAGTTAGTTTGGAATGAATTCTC GGAAATGTTATTGTTGCTTCTTCCTCTTCTTAATTCATCATCTGTGAAAAATCTCCTTAAACCTTTTTCTAAGGATAAAT CGTCAAGCTCAGCCGAGGATGGCACAATATGTCCCATTTGCCAGGCTACTCCAACCATTCCTTATGTTGCTATACCCTGT CATCACATATATTGTTACTATTGTCTTCGGACACGATGTGCTGCTGCCCCATCATTTAGGTGTTCCAGGTGCAGTGAGCC AGTTGTTGCTATGCAACGCCATAGCGGTGTCTCCACAGAATGA
Protein sequence (LotjaGi3g1v0368100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSAMLKEQLVKVFALMKPGMLFQYEAELDAFLEFLIWRFSIWVDKPTPGIALMNLRYRDERAVESRDKVRTGLEGPGLTV AQKLWYCIATVGGQYIWARLQSFSAFRRWGDTEQRPLARRLWIFIQRIEGIYRATSFGNLLIFLCTGRYRNLIERALRAR LVYGSPNMNRAVSFEYMNRQLVWNEFSEMLLLLLPLLNSSSVKNLLKPFSKDKSSSSAEDGTICPICQATPTIPYVAIPC HHIYCYYCLRTRCAAAPSFRCSRCSEPVVAMQRHSGVSTE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Pfam | 1 | 201 | 201 | 7.8E-36 | ||
Gene3D | 197 | 279 | 83 | 1.6E-8 | ||
SUPERFAMILY | 217 | 270 | 54 | 5.71E-9 | – | |
CDD | 224 | 265 | 42 | 5.56971E-18 | – | |
ProSiteProfiles | 224 | 265 | 42 | 9.863 | ||
ProSitePatterns | 240 | 249 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0368100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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