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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0377700 |
| Transcript ID | LotjaGi3g1v0377700.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Signal recognition particle protein; TAIR: AT2G45770.1 signal recognition particle receptor protein, chloroplast (FTSY); Swiss-Prot: sp|O80842|CFTSY_ARATH Cell division protein FtsY homolog, chloroplastic; TrEMBL-Plants: tr|I1JKD2|I1JKD2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0377700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:77050763..77056319) extracted from Lotus japonicus Gifu genome v1.2.
GTTATTTGAAACGGCGTCATTTTGGCTCACTTTATCTTCTCCTCCCTCCTTCAACGAACCAGTGACTCAGTGAGTGTGAG CAGCAGAAATGGCTACTTCCTGTTCAGCTTCATTCGCCGGCTTCTCCATCATCTCAAGACCTTCTCCTCAACCCAAATTC ATCCTCTTCAACATCCCTCCTCGAACCACAACCCTCCACCACCGAACCGGCACGTCCCGGTTCACATGCTCCGCCGGCCC GACCGGATTCTTCACGAAACTGGGCCGGTTGTTGAAGGAGAAGGCAAAGAGCGATGTGGAGAAGTTATTCTCTGGTTTCT CCAAAACCCGCAGCAACCTCGCCGTCGTCGACGAGCTACTTCTCTACTGGAACCTCTCCGACACCGACCGAGTCCTCGAC GAACTCGAAGAGGTTCCTGTTTGAAACTGTTCTTTCTGTTTTCTTTTTCGAGTTTTCGAATAATGTCTTTTTATCTTCAA ATTTTCAGGCTCTTTTAGTGTCTGATTTTGGTCCAAGAATCACTGTAAAGATAGTGGAGAATTTGCGTGTGGACATTTTG TCAGGGAAGCTCAAATCAGGGGCTGAGATAAAGGTACCAAATGTTTTAGCACATGCATACGAATTTATTGAAGTAAGCCA TTAATTCGAATGACTTACTTCAATAAATTCGTATGCACATTGGTTAAGCAAGATTTATACCTTAGATGACAACCCTTTTA TTATTATTAAATGTTTGTGATGTCGATTGTGTTGTGCATTTGTTTAAATGGCTTTAGGAAGCACTGAAGAAGAATGTTTT GGAGTTGTTGACAACTAAGGGGAGTAAGACTGAACTTCAACTTGGATACAGGTGTGAGCATTTTCTTATTAACTACTGAT TTTTCAGTTTGTTATGATTCATTGAATTTTATAGGGTTCATTTTTTTTTTTTGCTTTTTGTTGGAATATCTTTTGTTTTC AGGAAGCCGGCTGTAATAATTATAGTTGGTGTTAATGGTGGTGGGAAGACAACATCTTTAGGTAAGGAAAAAACTTCGAG TGTTGATTTTATTCTTTGCCTTGCAATTAAAGAAAATATTGAGAGAACTGAGAACACATATATTGTAAATTCTTAGATCA ATAATCTTCAAATGAAAGCCATCTACCCCTCTCTAATAAGCAACGGAATTGTTTTTAATTGTTTAGAAATCCTAAACAAT TCCAATTTGATCAGCTTTTATATGCAGGAAAGCTGGCATATAGATTGAAGAATGAAGGAGCCAAGGTTAGATATGCTATT TATTTCATAAATTCAGGGGTAAAACTTATCGTTTGATTATATGAAAGATATGCTATTTCTCAAATAAGAAAAGTGGATCA AATGGAAAGATCCAATCAGAAAAGGGAAGTGGAAGACCTAAGTGCTAAGAGAACATAAGAAGAAACCGCTAAAATAAACC ATCTCTAAATGTTTTTACTGATAAATACTATACTGTATGAAGTATGAACCTTATGATGCTTCATTTCTCAATATCTTTCA CGTCTATTCCAGTGAGCTTTAGTATCTGTTTCATATCATATTACCTTCTGTCACTTCTTTATGTATCACGTTGGGATACA ATATTTCATACTGGTTGATGTTCTCATCTTCAAAGTCCACCAGATATTGATGGCAGCTGGTGATACATTCAGAGCAGCTG CTAGTGATCAGCTGGAAATATGGGCTGAAAGGACTGGGTGTGAGATTGTCGTGGCTGAAACTGAGAAAGCCAAAGCATCG TCAGGTGCAAATAGAAATGAATTTTACTTCCAGCTCTGCAGCTCTGCTGTTGATTACTTTCAAGTTAAGTTGTGGATACT AAACTTTGTAACTTATGTTTTACTTGCAGTGCTTTCACAGGCTGTCAAAAAAGGAAAAGAGCTAGGTTATGACATTGTAT TATGTGATACATCTGGACGTAAGTACAGAAATTATAGGGCTCACTGTTTTGTATTTCAATGAACTACTTGGCTGGTTGCA TGTTAGCATTGGGGTTCATGTTATATTCTCAGGTTTACACACTAATTACAGCCTAATGGAAGAGTTGATTTCTTGTAAAA AGGCTGTTGCTAAAGTAGTTCCTGGCGCACCAAACGTAAGACCAAGTCTTTGATGCTTTCTCCTCTCAACTCAATCATCT TTCTGCTGGTAAAATCATTGAGAATTGCTGAGAATTAAATCATACCTTGCTTGTTTTAGAATCCACAGCCTCATCGAAAG GCTTGTTTTCTTTTTCAAGTTGCTTTTGATGTTTTATTCTTCTTACCTTCTTTTTTGTTTTCTAGCAATATTCTGAGGAC TGGGCTTTTAGACTTTAATGTGGAATTTGGCGAAACATTGTGATGTGGATGTTATCTATCATACATTCATTTGTATTTTA CTTTTGTCCATATGGATATCAATTGATTTATACTTGCAGACCTTGCTTGTGTTCTCTTAACATTTATTAGTCTTCAAATT AAGTTGGGAAACTATGATCAAACAAGACATAGGTTAACACTTTCACCTTCATGATTGGAAACTTCTACATTACCTGCTTG TGGGTTTTCATACCTCATGAATTTTTCACTTATCACTTTTATGGTGACTCAAATGTGAACTGTTTGCAACACAATCTTTG TCAGTGAAGACTTGAAGTAGCTGCGAACAAATTTAACTAGCATTTGAAAAATGATAGTGTTTTCTGATGATGGTTATTCT TAATGCGATGGTGAGTATTCTTATTGCTGATAATGTCTTTTCATGCTCAGATGTGCTGAAGGGAGAGCAATGTCTGCTTT CTATTTATTTATTTCTCAAGGCATTCCCTTATCCTGCTGTGTCATTATTTTGTTGACTATTTTATATATTTTCTTTGCAA TCTATGATCTAATGAGTTGCTCACAAACATGACAGGACTTTACTGTTTCCATCAATTGAACTACATTTATGTCATTTGTT TCCTGAACATCTTGATTATTGACAGAGTTCAAGCTGTTGTAGCAAATTTCAGTTTGCTAAATTGACTGTGATCCAAGTAT TATGAAGTATAATCATTATCGTTGCTATTATTTTAGCGTCTTGCCCTAGTATGTATGTATAATATGTGTGTGTATATATA TATTTGTATCATTTAGTATGACAATTGTCTTTAATAAAGCTTGTTGATGTATGTATGCGAATAGTATGTGAGAGAAAAAT ATCTTTCCCTTATCATATTTTCCATCTCTTTATCTCATCCACTACACTACACACACACATCTAAAGTAGCATAAAATGAC GGTGTTTACAATGCTTGCAGGAGATCCTACTGGTTCTGGATGGGACTACTGGTTTGAATATGTTGCCACAAGCAAGAGAA TTTAATGAAGTAATTCTCATTCTGATTTTTAAATTTTGAACTTTGTCCTATTCTGTTTGGGAAAGTTGTTATTGTACGCA TTTGAACCCTGCTTTGCATCTTTATGATGGGTATTGGATCTTTTAAGCTAAAAGATCTGCAGTTCTACATCAAACTTGCA ATTAGTTGTAGTCAAGGGCCTATAATTTCATTGTCCCAGGAATCACATTAATAGAAGTTCCTAATTTGTTTAATTAATCA TTTTATGCATATAGGGCAAACATTTATACAATAAAGTAGTTGACATTCTTCATGTGCTTCCAAATGCCCATTTCTATCTT CTAAACTGAAGTATCACCCTTAATATGGAATATAAGAGCAAGAATAGGAACACTAAGGTACTCTTTGGCTCTTCCTATGC AATGTTTATGGTGACGCCCAAATTATGGTCAATTTTTAAATATGAAATGCTGGTCTCAGAGTCAATAGCTGTAATATATC ATTCAGTATGAATGGTTGTTCATAAATAGGTTTTAGATTTTCTCACCCTTATTATAGTCTTATTATTATTTGCCTTGCTA ATTTAGGTATCCCTCCTCCGTAATATTTCAATATTTGGTATTACGGTGTGGTTTCATATGAACTCGCTGTTAACTGTTAA TGAAATTGTTTTGACTCTACCTTTAAACTTGCAACAGGTTGTGGGTGTTACTGGTTTAATTTTGACCAAACTGGATGGTT CTGCTAGAGGTGGCTGTGTGGTAATCTCTTCATTTTTGTAATCTTAATAGATAGTTTTTCTATTTTTCTAGACTCAATAA GTTCTGATAATTAGGATATTTTTTGTTTCTGGGGTGATCATGGTAAGGAATGAGATAGTGATTTCTGCTGGCAGGTTAGT GTGGTTGATGAGCTTGGAATCCCTGTAAAATTTGTGGGTGTTGGAGAAGGTGTTGAAGACCTTCAGCCCTTCGATGCAGA GACTTTTGTCAATGCCATTTTTATGTAAACCAATCACCAATGTGTTTGGTATGTACATCATGACTTATCCTTTTCATTCC TTTCAAAATATTCCAAATTCTTTTTCACTTTCTGCATCTCATTTTCTCCACCTCCAATCCACCCCTTGTTATCTCTCATC TTTTCCCATCACTTATCACGTCTTTAATTTTCTCTCTCATCTCCATTAGAGGTGCATACACAGATTTAGATGCTCTACAG CTAACAAATAGACATGAACTTTCTAATTTAACAAATTATTTTTTATTTGTATCAATCTTAACCATTGATTACAAAAACAA TGGCTATGATTGTACTGCAGATCCAATTTGGTGTATACACCCAAGGGTGCAGTGACATTATCCTCATTTTCAAACCTGTC ATACCAAATTGGAGTCAAAGGCCATCCATAAAACAAAATATCGCTTCAACACTCTTTTTTGGATTGAAATCCATGCAGAA TCCGCTAAATTATATGGGTTTCAACTCTAATTTGGTGGGTCCCACACAAATTTCATCTTAAAAAGAAAGTGTATTAGATA GTGCTCAATTGAGTATTATTAGCATTCATCTTGCTCTTGTTTAGGTAGCTAGAAGTACCTTAACCATGAAGTTCCATCAT TCCATGCATACAGGCTGTTTCAATCTTTTGCTTTTTTTCTTACAGTGTTGTATATGTTACATCTCAGAATCATCTGTTAG CAGAGCATATTGACATGAATTTGCACAGGCAGAGCAACACATGGCCACAGGAAAGATAGATAACAGTTTATTATTGAAGC CATTCTTGAGAGAGGTCAAGTGTTGCCTAAGCATGTATATGATTTTGGGGGTGCAGAGCTACCATTACTTTTAACGCAAG CTGAAGGTTTATAATCCCTTCACATTTTTTGTGCTCGACAGTTTCTGACAATGTGACTGGTTGACTTGGTGGTGGGGTAT ATTTTTCACTTAAAGTACTAAATGATTTATTGTGGGGTGTTCATGTAAATGAAACTACAGCCAGGCTAATGATGATTTTT ACTTTCATCGACTTCTCAATGAGGTTTCCTATGTAATTGTTTGTCTTGTAAACTTACCTGGAAAAAACCCTTCAAACAGC AAGCCTTCTATGATTCTGATTTGTTTTTACTCTTATATATCCTTGGGAACCTTTGATGTACAAGTTGCACTATAATGTGG CTTTTACTTCACCATGCTTAAACCAAATGCATATTGG
CDS sequence (LotjaGi3g1v0377700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTACTTCCTGTTCAGCTTCATTCGCCGGCTTCTCCATCATCTCAAGACCTTCTCCTCAACCCAAATTCATCCTCTT CAACATCCCTCCTCGAACCACAACCCTCCACCACCGAACCGGCACGTCCCGGTTCACATGCTCCGCCGGCCCGACCGGAT TCTTCACGAAACTGGGCCGGTTGTTGAAGGAGAAGGCAAAGAGCGATGTGGAGAAGTTATTCTCTGGTTTCTCCAAAACC CGCAGCAACCTCGCCGTCGTCGACGAGCTACTTCTCTACTGGAACCTCTCCGACACCGACCGAGTCCTCGACGAACTCGA AGAGGCTCTTTTAGTGTCTGATTTTGGTCCAAGAATCACTGTAAAGATAGTGGAGAATTTGCGTGTGGACATTTTGTCAG GGAAGCTCAAATCAGGGGCTGAGATAAAGGAAGCACTGAAGAAGAATGTTTTGGAGTTGTTGACAACTAAGGGGAGTAAG ACTGAACTTCAACTTGGATACAGGAAGCCGGCTGTAATAATTATAGTTGGTGTTAATGGTGGTGGGAAGACAACATCTTT AGGAAAGCTGGCATATAGATTGAAGAATGAAGGAGCCAAGATATTGATGGCAGCTGGTGATACATTCAGAGCAGCTGCTA GTGATCAGCTGGAAATATGGGCTGAAAGGACTGGGTGTGAGATTGTCGTGGCTGAAACTGAGAAAGCCAAAGCATCGTCA GTGCTTTCACAGGCTGTCAAAAAAGGAAAAGAGCTAGGTTATGACATTGTATTATGTGATACATCTGGACGTTTACACAC TAATTACAGCCTAATGGAAGAGTTGATTTCTTGTAAAAAGGCTGTTGCTAAAGTAGTTCCTGGCGCACCAAACGAGATCC TACTGGTTCTGGATGGGACTACTGGTTTGAATATGTTGCCACAAGCAAGAGAATTTAATGAAGTTGTGGGTGTTACTGGT TTAATTTTGACCAAACTGGATGGTTCTGCTAGAGGTGGCTGTGTGGTTAGTGTGGTTGATGAGCTTGGAATCCCTGTAAA ATTTGTGGGTGTTGGAGAAGGTGTTGAAGACCTTCAGCCCTTCGATGCAGAGACTTTTGTCAATGCCATTTTTATGTAA
Protein sequence (LotjaGi3g1v0377700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATSCSASFAGFSIISRPSPQPKFILFNIPPRTTTLHHRTGTSRFTCSAGPTGFFTKLGRLLKEKAKSDVEKLFSGFSKT RSNLAVVDELLLYWNLSDTDRVLDELEEALLVSDFGPRITVKIVENLRVDILSGKLKSGAEIKEALKKNVLELLTTKGSK TELQLGYRKPAVIIIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAETEKAKASS VLSQAVKKGKELGYDIVLCDTSGRLHTNYSLMEELISCKKAVAKVVPGAPNEILLVLDGTTGLNMLPQAREFNEVVGVTG LILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAETFVNAIFM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 37 | 371 | 335 | 7.7E-147 | – | |
| PANTHER | 37 | 371 | 335 | 7.7E-147 | ||
| Gene3D | 60 | 160 | 101 | 4.7E-26 | ||
| SUPERFAMILY | 70 | 147 | 78 | 2.36E-13 | ||
| SMART | 73 | 154 | 82 | 5.0E-8 | ||
| Pfam | 99 | 148 | 50 | 1.2E-7 | ||
| TIGRFAM | 99 | 371 | 273 | 3.6E-93 | ||
| Gene3D | 162 | 372 | 211 | 3.8E-75 | – | |
| SUPERFAMILY | 167 | 370 | 204 | 3.66E-44 | ||
| SMART | 169 | 342 | 174 | 0.0015 | ||
| SMART | 170 | 372 | 203 | 1.4E-100 | ||
| Pfam | 170 | 371 | 202 | 5.6E-72 | ||
| CDD | 171 | 370 | 200 | 3.95695E-112 | – | |
| ProSitePatterns | 345 | 358 | 14 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
| Biological process | SRP-dependent cotranslational protein targeting to membrane | The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane. |
Expression pattern of LotjaGi3g1v0377700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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