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LotjaGi3g1v0381000.3

Overview

Field Value
Gene ID LotjaGi3g1v0381000
Transcript ID LotjaGi3g1v0381000.3
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description ATP-dependent RNA helicase; TAIR: AT4G00660.1 RNAhelicase-like 8; Swiss-Prot: sp|Q7XMK8|RH6_ORYSJ DEAD-box ATP-dependent RNA helicase 6; TrEMBL-Plants: tr|A0A067KA17|A0A067KA17_JATCU Uncharacterized protein; Found in the gene: LotjaGi3g1v0381000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:77358662..77362419) extracted from Lotus japonicus Gifu genome v1.2.

TATCCGAGATCATCGATCATGGTACAATCAAACTTAACTGTTTATACTTTATCTAGAGATTTCGGATATGTCCTGAATTT TACTCCTTGTAGCCTGTGCAATCAACGGCATTTTCCCTAACTTGAGTTTCTGAGTTTTAATGTTTTTGCATATTTACATG ATATTTGTAAAATCTACTTGAAAATAGTTATGAATTATATGATCCATGGATCAGTCGATTAAGCTGCTTTGATTATGGGG TTTGTTATTAACTTTTATATCATGACATTTATGTTGTTGATCTCCTTTGTTGTTTCCAGGATGTGACAGCAACTAAAGGA AATGAATTTGAGGATTACTTTTTGAAACGTGAGCTGCTCATGGGGATTTATGAGAAGGGTTTTGAGAGACCTTCTCCCAT CCAAGAAGAAAGCATACCAATTGCTCTTACCGGTAGTGACATTCTTGCTAGGGCTAAAAACGGAACTGGCAAAACAGCTG CATTTTGCATTCCAGCATTGGAAAAAGTTGATCAGGATAATAATGTTATTCAAGGTTTGACATCATCCTCTTATTCTCAG CTTTACAAGACTCTCACAAATCTAATTGAAAGGACTGTATATAATGATGTCTCAGTTCTGTGAACCTTCTTGTGTCCTGA TACTGATTCTGAGTTGTATCCTTCTTAGTGTTGTCAAATCGCGATCGCGGACCATCGCGGTGAGCCAAAAATCCGCCATT TAGTGGTGAATAGCGGGAATAGCGCGCTATAGTGGGCAATAGCGGCGTTGCGATTAGCCAAAAATCCGCTATGAGCGCCG CTATAGCCGCTATTTGATAACACTGATCCTTCTATTTAAGAAAGAAAAGAAAATGAAATCTATGACAAGATTTAGCTAGA TCAGCAATAAATAATTCTGAGAACATGTTGGGCTTCAAAGGGAATCAAATTGGTCATGTTTTTACCTTTTTTGCTTAACT CCTGAAAGTCTCACAAGCTGTTTTAAGTGGATTCATGTGACCCTACAAACCTGCTGTAGCTTGGTCAATTGATAATATCT CTGTCGTTGAATGTTTGGTATATTCAGAATTAGGATTTAAGTGTTGAGTAGCTGCTCCTTGTAATCTTCATTGATCATAA TTAATTCTTTATCTTGTGCTCGTGGATGCTGGCCTGTTGTTCGCTGTTGATTGAACCATGTTGAATTAGGATTTAAGTGT TGAGTAGCTGCTCCTTGTAATCTTCATTGATCATAATTAACTCTTTATCTTGTGCTCGTGGATGCTGGCCTGTTGTTCAC TGTTGATTGAACCATTTAAATTCAGAGTTGATATCTCATTATTTGTTCTCTGCTGCACATATAGTTTATGAACTTCCAAA TTCCATTTAACAAAATAGTTTCTTGTTGAATATTGATAAGTTGTCATTTCTCTTGAAATGTTATTTTATCTGTAAGATGG ACGCAGATAAGTTTTGTTGCTAAGATTGAAAATAGTTTTTGTTTTTCGGTGGAACTATGGATGCATAATTTGATAACCAT GATGGTATTTTTAGTTATTTTATGGTTTTTGAGTCTTTCAATAAGCACAATGACAGGCTTTACCCATGTTTTGGCTTTAT TCTTTGTATTTCTCTATCTTACAGTTGTTATCCTGGTCCCGACTCGAGAATTGGCTTTGCAAACATCTCAAGTGTGCAAA GAGCTTGGGAAGCATTTGAAAATTCAAGTTATGGTTACAACAGGTGGTACCAGTTTGAAAGATGATATAATGCGTTTATA TCAACCGGTTCATTTACTAGTCGGAACTCCAGGAAGAATATTAGATCTTGCTAAAAAGGGTGTTTGTGTTCTGAAAGATT GCTCTATGCTTGTTATGGATGAGGTAAATACATTTTATCTGGAAATTCACTTATTTGTGTTGTACTGAGAAGCATGAACA GTTTGCAACACGGTTGCATATTAAAATAAGTTTAGGAAAATGTGGGTAAGAAACTTGATTGTCTCTTATTAGAGACATGA ATGTTCTGATGTGCAGCCATGTTTCTTTAAGTTTTTGTCTGATTTTCTATGATTGTAAATCTGTATCCCAAATGTTGTCA AGCTGTTATTGTAAATCTGATTTTCTATGATTTTTGCTCTTATTTTTTGTTTTAAGATTGTGGCATATCCTTTGTGCATT AATAATGTCTTTATTAGCCAGCACTTAAATCAATCTGTGACTTCACATAGCTATCTGTGTTTCTCAGGCTGATAAGCTTC TATCTTCAGAGTTCCAGCCTTCTATACAGCAACTGATTGATAGTAAATTTTTGTCTTATCTGCTATGATTGTGAATCTGT ATCCCAAATGTTGTCAAGCTGTTATTGAAAGCGAATGCCTCTGTTTACTAACTTATTATTTTCTGTTTTAAATATTGTGG TATATCCTTTGTGCATCTTTATTGTGCATTAATGTCTTTACTAGCCAGCAGTTAAATCAATCTGTGACTTCACATAGCTA TCTATGTTTCTCAGGCTGATAAGCTTCTATCTCCAGAGTTCCAACCTTCTATACAGCAGCTGATTCAATTTCTTCCTAGA AACCGTCAAATTCTGATGTTTTCAGCAACATTTCCTGTTACTGTAAAGGATTTCAAAGATAGGTTTCTTCACAAACCATA TGTCATTAACCTTATGGATGAGCTAACTCTGAAGGGTATTACGCAATTTTATGCGTTTGTGGAAGAGAGACAGAAAGTCC ACTGCTTAAATACTTTATTTTCTAAGGTTTGATTTTTCTCTATCCTCTGGGTTTTCTTATATGCTAGCTGTGCATATGGT ATTAATAGTGGTTTCTGTTTCAGCTGCAAATAAACCAGTCAATCATTTTCTGCAATTCAGTGAATCGGGTTGAACTCCTT GCCAAGAAAATCACTGAGCTTGGGTATTCATGTTTCTACATACATGCGAAGATGTTGCAAGACCATCGTAATAGAGTATT TCATGACTTCCGCAATGGTGCCTGCCGAAATCTTGTTTGTACTGGTATGTTGCTGACACTTTAGCGTCATCCCAGAAATC AGTATATTGAGTTTTTTCCCATCGCAGTTGCTTGTGAATGATATCTATCCTACCTGATATGGCTTTACAATACTCAAATG TCTTTGGGTCCTTGTTTCCTTAATTTTGTGTCATTATCCTCATTCGATTCATAGTTAAAACCAATGTAGTATATACTGTT GATATGTTAAGTGACAAGGTATGTTAAGGAGTCTTTAGTCTGGTATATATGTGTATCTAAACTCATGTTTAGATTTTTAA CTCCATATATGTATATTGTCCTGATAATCTTTATCACTCACTTTTCTTCATGTGTGAAACATTCACAGATCTTTTTACTA GGGGAATAGACATCCAAGCAGTTAATGTTGTTATTAATTTTGATTTTCCCAAGAATGCAGAAACTTATTTGCACAGGGTA TGTTTGATTTCTGCTTATTTTCTACCCAGTTTGTTTTGCTTGATACCGAATATGTTGTACACGTTCTAATGGGTGTTCTA TTGATAACAGGTTGGTCGTTCAGGGAGGTTTGGCCACCTTGGTTTAGCAGTGAACTTGATCACTTATGAGGATCGCTTTA ATTTGTATGTTTTAATTCTGTTGGATAAGTTTTAGACATACTTGCTGCAGGATTTTGATGTATTTCTTCTTTTGGTCAGA TATAGGATTGAACAAGAACTTGGCACTGAAATCAAGCAAATTCCGCCACACATTGATCAGGCAATTTATTGCCGGTGA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0381000.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATGTGACAGCAACTAAAGGAAATGAATTTGAGGATTACTTTTTGAAACGTGAGCTGCTCATGGGGATTTATGAGAA GGGTTTTGAGAGACCTTCTCCCATCCAAGAAGAAAGCATACCAATTGCTCTTACCGGTAGTGACATTCTTGCTAGGGCTA AAAACGGAACTGGCAAAACAGCTGCATTTTGCATTCCAGCATTGGAAAAAGTTGATCAGGATAATAATGTTATTCAAGTT GTTATCCTGGTCCCGACTCGAGAATTGGCTTTGCAAACATCTCAAGTGTGCAAAGAGCTTGGGAAGCATTTGAAAATTCA AGTTATGGTTACAACAGGTGGTACCAGTTTGAAAGATGATATAATGCGTTTATATCAACCGGTTCATTTACTAGTCGGAA CTCCAGGAAGAATATTAGATCTTGCTAAAAAGGGTGTTTGTGTTCTGAAAGATTGCTCTATGCTTGTTATGGATGAGGCT GATAAGCTTCTATCTCCAGAGTTCCAACCTTCTATACAGCAGCTGATTCAATTTCTTCCTAGAAACCGTCAAATTCTGAT GTTTTCAGCAACATTTCCTGTTACTGTAAAGGATTTCAAAGATAGGTTTCTTCACAAACCATATGTCATTAACCTTATGG ATGAGCTAACTCTGAAGGGTATTACGCAATTTTATGCGTTTGTGGAAGAGAGACAGAAAGTCCACTGCTTAAATACTTTA TTTTCTAAGCTGCAAATAAACCAGTCAATCATTTTCTGCAATTCAGTGAATCGGGTTGAACTCCTTGCCAAGAAAATCAC TGAGCTTGGGTATTCATGTTTCTACATACATGCGAAGATGTTGCAAGACCATCGTAATAGAGTATTTCATGACTTCCGCA ATGGTGCCTGCCGAAATCTTGTTTGTACTGATCTTTTTACTAGGGGAATAGACATCCAAGCAGTTAATGTTGTTATTAAT TTTGATTTTCCCAAGAATGCAGAAACTTATTTGCACAGGGTTGGTCGTTCAGGGAGGTTTGGCCACCTTGGTTTAGCAGT GAACTTGATCACTTATGAGGATCGCTTTAATTTATATAGGATTGAACAAGAACTTGGCACTGAAATCAAGCAAATTCCGC CACACATTGATCAGGCAATTTATTGCCGGTGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0381000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKVDQDNNVIQV VILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEA DKLLSPEFQPSIQQLIQFLPRNRQILMFSATFPVTVKDFKDRFLHKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTL FSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVIN FDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24031
2 368 367 5.2E-246 –
PANTHER
PTHR24031:SF661
2 368 367 5.2E-246 –
Gene3D
G3DSA:3.40.50.300
2 213 212 1.5E-67 –
ProSiteProfiles
PS51195
9 37 29 10.097
IPR014014
CDD
cd17940
11 211 201 2.58939E-145 –
SMART
SM00487
28 224 197 1.4E-57
IPR014001
Pfam
PF00270
34 198 165 6.6E-45
IPR011545
ProSiteProfiles
PS51192
40 210 171 29.214
IPR014001
SUPERFAMILY
SSF52540
79 363 285 7.86E-71
IPR027417
ProSitePatterns
PS00039
156 164 9 -
IPR000629
Gene3D
G3DSA:3.40.50.300
214 383 170 1.2E-54 –
ProSiteProfiles
PS51194
220 380 161 24.133
IPR001650
CDD
cd18787
221 350 130 3.2386E-57 –
Pfam
PF00271
235 341 107 4.6E-28
IPR001650
SMART
SM00490
260 341 82 1.2E-30
IPR001650

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0381000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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