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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0381000 |
| Transcript ID | LotjaGi3g1v0381000.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent RNA helicase; TAIR: AT4G00660.1 RNAhelicase-like 8; Swiss-Prot: sp|Q8RXK6|RH8_ARATH DEAD-box ATP-dependent RNA helicase 8; TrEMBL-Plants: tr|A0A067KA17|A0A067KA17_JATCU Uncharacterized protein; Found in the gene: LotjaGi3g1v0381000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:77358662..77363988) extracted from Lotus japonicus Gifu genome v1.2.
GAATCATTTTGTTTGCTGAACCTATTCTACACTTTTTTCTTTTATATGCTTATGCTCAAGTGCAAAGTTGAATTGATATT GTCCACGATCTTGGCTGATGCCTTCTTGTTCCAAATGCTTTATTTTATGGAGTGATGTTGATGAAATCATGAGTTTATGA TAGTTTGGAAATTTTCACAATGTAAAATTTAATTCTCTTACTGCTAGATGAAACTATTTTTTAGTAAATATTTTAAGTGG TTCTGCTCTTCAAAAAGAAAGAATGTGTTCTCATGTTATCCTCAATTGTTTTTTGTTTTCCTCTATTAGTTCACAAGATT GGAAGGCAAGACTGAAGATTCCACCCGCTGATACACGATATAAGACCGAGGTATGGTTATGAATACTCTTATGCCTCAAG CTACGGGTTATATGCATTTTATTCTAATCATATAGTTTGGTTTAGACCCTTGGGGAAATACGATGCTTCAAGCTGCTGGT TATATGCATTTTATTCTAATCATTTAGTTTGGTTTAGATCCTTGGGGCAGTACACCTTATTTATGATATTTGTAATTACT TACTATTTTATTTTTGTTTATCTTTATCAGTATGGAGTTATTTCATACACTTAAGGGCAAACTTGGTTGCTAGATCCAGG GAGGGGCCCGATCCACTTTGGGGATCTAATGTAGGCAGCTTTACCTTGCATTTTTGCAAGAGGCTGATTCTATGGCTTGA ACATGTGCCCGCAAAGTCACATGGCAACAACCTTACCGTTGTGCTGAGGCTCGCCCTCTAGTTATTTCATACACTAATAT ATCATAAATGTTTTTGTGAAGATCATTCGTGCTATTAAATTAAATTGGCATTTTGTTGGTTGACTCATGTCTTTTTTATT GTCCTGTTAGGCCCTTGAGATTGTTCTTTCAGTTATTTAGAGTATGATCCATAGTTATCAATAGCATTGCTATCCACCGT AGCATCACGTCTCGGCCATGTGCCGCTACAAGGACCTCCATAGCGATGCAGTTCACTGTCGTGGCGGAACCCAAAAAATC CGAAAACCTTGGACAAAAACTATGGTTACCGCAGGAAGTTGTCATCGTAGCCATGACCTCTGTTTTTCTGAAGCACCGCA AGAGGAATGAAAAGAAGGATGAGGATGGTAGGGAGTCAGATCTGGTGACAGGAGAAGAAATGAATAAGATGAGAAGAAAG CCAGGGAAGGAAGAGGAGTTGCGGTGCTGTGAACTAACGTAGTGTTGCTTTAGCTGTTGGTATCAAAATTGAGTGAAATA AATTAGGGCTTTGGTAGTTAATGGGCTTAAAGCAAAGCCCAATCACATGTTTAAAAAAAAAATAGAAAAGATCTGGTCTT GGTCAATTTATAAATATTTGAAACAAATAATAAATATATTATAATATACTATAAATATTTTTAAATCATTTAATATTTAA AATATTATTAGTCAGTATAAATATAATAAAAGGTCTGGTCTTGGTCATCTGTACACCAAAAAAAAAATCAGTCATCCCAC TATGTACCACCCCCCTTTTCCAGATTTTGTGGTGGCCGGTATGCTTCACTATCCGAGATCATCGATCATGGTACAATCAA ACTTAACTGTTTATACTTTATCTAGAGATTTCGGATATGTCCTGAATTTTACTCCTTGTAGCCTGTGCAATCAACGGCAT TTTCCCTAACTTGAGTTTCTGAGTTTTAATGTTTTTGCATATTTACATGATATTTGTAAAATCTACTTGAAAATAGTTAT GAATTATATGATCCATGGATCAGTCGATTAAGCTGCTTTGATTATGGGGTTTGTTATTAACTTTTATATCATGACATTTA TGTTGTTGATCTCCTTTGTTGTTTCCAGGATGTGACAGCAACTAAAGGAAATGAATTTGAGGATTACTTTTTGAAACGTG AGCTGCTCATGGGGATTTATGAGAAGGGTTTTGAGAGACCTTCTCCCATCCAAGAAGAAAGCATACCAATTGCTCTTACC GGTAGTGACATTCTTGCTAGGGCTAAAAACGGAACTGGCAAAACAGCTGCATTTTGCATTCCAGCATTGGAAAAAGTTGA TCAGGATAATAATGTTATTCAAGGTTTGACATCATCCTCTTATTCTCAGCTTTACAAGACTCTCACAAATCTAATTGAAA GGACTGTATATAATGATGTCTCAGTTCTGTGAACCTTCTTGTGTCCTGATACTGATTCTGAGTTGTATCCTTCTTAGTGT TGTCAAATCGCGATCGCGGACCATCGCGGTGAGCCAAAAATCCGCCATTTAGTGGTGAATAGCGGGAATAGCGCGCTATA GTGGGCAATAGCGGCGTTGCGATTAGCCAAAAATCCGCTATGAGCGCCGCTATAGCCGCTATTTGATAACACTGATCCTT CTATTTAAGAAAGAAAAGAAAATGAAATCTATGACAAGATTTAGCTAGATCAGCAATAAATAATTCTGAGAACATGTTGG GCTTCAAAGGGAATCAAATTGGTCATGTTTTTACCTTTTTTGCTTAACTCCTGAAAGTCTCACAAGCTGTTTTAAGTGGA TTCATGTGACCCTACAAACCTGCTGTAGCTTGGTCAATTGATAATATCTCTGTCGTTGAATGTTTGGTATATTCAGAATT AGGATTTAAGTGTTGAGTAGCTGCTCCTTGTAATCTTCATTGATCATAATTAATTCTTTATCTTGTGCTCGTGGATGCTG GCCTGTTGTTCGCTGTTGATTGAACCATGTTGAATTAGGATTTAAGTGTTGAGTAGCTGCTCCTTGTAATCTTCATTGAT CATAATTAACTCTTTATCTTGTGCTCGTGGATGCTGGCCTGTTGTTCACTGTTGATTGAACCATTTAAATTCAGAGTTGA TATCTCATTATTTGTTCTCTGCTGCACATATAGTTTATGAACTTCCAAATTCCATTTAACAAAATAGTTTCTTGTTGAAT ATTGATAAGTTGTCATTTCTCTTGAAATGTTATTTTATCTGTAAGATGGACGCAGATAAGTTTTGTTGCTAAGATTGAAA ATAGTTTTTGTTTTTCGGTGGAACTATGGATGCATAATTTGATAACCATGATGGTATTTTTAGTTATTTTATGGTTTTTG AGTCTTTCAATAAGCACAATGACAGGCTTTACCCATGTTTTGGCTTTATTCTTTGTATTTCTCTATCTTACAGTTGTTAT CCTGGTCCCGACTCGAGAATTGGCTTTGCAAACATCTCAAGTGTGCAAAGAGCTTGGGAAGCATTTGAAAATTCAAGTTA TGGTTACAACAGGTGGTACCAGTTTGAAAGATGATATAATGCGTTTATATCAACCGGTTCATTTACTAGTCGGAACTCCA GGAAGAATATTAGATCTTGCTAAAAAGGGTGTTTGTGTTCTGAAAGATTGCTCTATGCTTGTTATGGATGAGGTAAATAC ATTTTATCTGGAAATTCACTTATTTGTGTTGTACTGAGAAGCATGAACAGTTTGCAACACGGTTGCATATTAAAATAAGT TTAGGAAAATGTGGGTAAGAAACTTGATTGTCTCTTATTAGAGACATGAATGTTCTGATGTGCAGCCATGTTTCTTTAAG TTTTTGTCTGATTTTCTATGATTGTAAATCTGTATCCCAAATGTTGTCAAGCTGTTATTGTAAATCTGATTTTCTATGAT TTTTGCTCTTATTTTTTGTTTTAAGATTGTGGCATATCCTTTGTGCATTAATAATGTCTTTATTAGCCAGCACTTAAATC AATCTGTGACTTCACATAGCTATCTGTGTTTCTCAGGCTGATAAGCTTCTATCTTCAGAGTTCCAGCCTTCTATACAGCA ACTGATTGATAGTAAATTTTTGTCTTATCTGCTATGATTGTGAATCTGTATCCCAAATGTTGTCAAGCTGTTATTGAAAG CGAATGCCTCTGTTTACTAACTTATTATTTTCTGTTTTAAATATTGTGGTATATCCTTTGTGCATCTTTATTGTGCATTA ATGTCTTTACTAGCCAGCAGTTAAATCAATCTGTGACTTCACATAGCTATCTATGTTTCTCAGGCTGATAAGCTTCTATC TCCAGAGTTCCAACCTTCTATACAGCAGCTGATTCAATTTCTTCCTAGAAACCGTCAAATTCTGATGTTTTCAGCAACAT TTCCTGTTACTGTAAAGGATTTCAAAGATAGGTTTCTTCACAAACCATATGTCATTAACCTTATGGATGAGCTAACTCTG AAGGGTATTACGCAATTTTATGCGTTTGTGGAAGAGAGACAGAAAGTCCACTGCTTAAATACTTTATTTTCTAAGGTTTG ATTTTTCTCTATCCTCTGGGTTTTCTTATATGCTAGCTGTGCATATGGTATTAATAGTGGTTTCTGTTTCAGCTGCAAAT AAACCAGTCAATCATTTTCTGCAATTCAGTGAATCGGGTTGAACTCCTTGCCAAGAAAATCACTGAGCTTGGGTATTCAT GTTTCTACATACATGCGAAGATGTTGCAAGACCATCGTAATAGAGTATTTCATGACTTCCGCAATGGTGCCTGCCGAAAT CTTGTTTGTACTGGTATGTTGCTGACACTTTAGCGTCATCCCAGAAATCAGTATATTGAGTTTTTTCCCATCGCAGTTGC TTGTGAATGATATCTATCCTACCTGATATGGCTTTACAATACTCAAATGTCTTTGGGTCCTTGTTTCCTTAATTTTGTGT CATTATCCTCATTCGATTCATAGTTAAAACCAATGTAGTATATACTGTTGATATGTTAAGTGACAAGGTATGTTAAGGAG TCTTTAGTCTGGTATATATGTGTATCTAAACTCATGTTTAGATTTTTAACTCCATATATGTATATTGTCCTGATAATCTT TATCACTCACTTTTCTTCATGTGTGAAACATTCACAGATCTTTTTACTAGGGGAATAGACATCCAAGCAGTTAATGTTGT TATTAATTTTGATTTTCCCAAGAATGCAGAAACTTATTTGCACAGGGTATGTTTGATTTCTGCTTATTTTCTACCCAGTT TGTTTTGCTTGATACCGAATATGTTGTACACGTTCTAATGGGTGTTCTATTGATAACAGGTTGGTCGTTCAGGGAGGTTT GGCCACCTTGGTTTAGCAGTGAACTTGATCACTTATGAGGATCGCTTTAATTTGTATGTTTTAATTCTGTTGGATAAGTT TTAGACATACTTGCTGCAGGATTTTGATGTATTTCTTCTTTTGGTCAGATATAGGATTGAACAAGAACTTGGCACTGAAA TCAAGCAAATTCCGCCACACATTGATCAGGCAATTTATTGCCGGTGA
CDS sequence (LotjaGi3g1v0381000.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGATTTATGAGAAGGGTTTTGAGAGACCTTCTCCCATCCAAGAAGAAAGCATACCAATTGCTCTTACCGGTAGTGA CATTCTTGCTAGGGCTAAAAACGGAACTGGCAAAACAGCTGCATTTTGCATTCCAGCATTGGAAAAAGTTGATCAGGATA ATAATGTTATTCAAGTTGTTATCCTGGTCCCGACTCGAGAATTGGCTTTGCAAACATCTCAAGTGTGCAAAGAGCTTGGG AAGCATTTGAAAATTCAAGTTATGGTTACAACAGGTGGTACCAGTTTGAAAGATGATATAATGCGTTTATATCAACCGGT TCATTTACTAGTCGGAACTCCAGGAAGAATATTAGATCTTGCTAAAAAGGGTGTTTGTGTTCTGAAAGATTGCTCTATGC TTGTTATGGATGAGGCTGATAAGCTTCTATCTCCAGAGTTCCAACCTTCTATACAGCAGCTGATTCAATTTCTTCCTAGA AACCGTCAAATTCTGATGTTTTCAGCAACATTTCCTGTTACTGTAAAGGATTTCAAAGATAGGTTTCTTCACAAACCATA TGTCATTAACCTTATGGATGAGCTAACTCTGAAGGGTATTACGCAATTTTATGCGTTTGTGGAAGAGAGACAGAAAGTCC ACTGCTTAAATACTTTATTTTCTAAGCTGCAAATAAACCAGTCAATCATTTTCTGCAATTCAGTGAATCGGGTTGAACTC CTTGCCAAGAAAATCACTGAGCTTGGGTATTCATGTTTCTACATACATGCGAAGATGTTGCAAGACCATCGTAATAGAGT ATTTCATGACTTCCGCAATGGTGCCTGCCGAAATCTTGTTTGTACTGATCTTTTTACTAGGGGAATAGACATCCAAGCAG TTAATGTTGTTATTAATTTTGATTTTCCCAAGAATGCAGAAACTTATTTGCACAGGGTTGGTCGTTCAGGGAGGTTTGGC CACCTTGGTTTAGCAGTGAACTTGATCACTTATGAGGATCGCTTTAATTTATATAGGATTGAACAAGAACTTGGCACTGA AATCAAGCAAATTCCGCCACACATTGATCAGGCAATTTATTGCCGGTGA
Protein sequence (LotjaGi3g1v0381000.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKVDQDNNVIQVVILVPTRELALQTSQVCKELG KHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQPSIQQLIQFLPR NRQILMFSATFPVTVKDFKDRFLHKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVEL LAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFG HLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 347 | 347 | 5.4E-229 | – | |
| PANTHER | 1 | 347 | 347 | 5.4E-229 | – | |
| CDD | 1 | 190 | 190 | 4.16136E-136 | – | |
| ProSiteProfiles | 1 | 16 | 16 | 7.227 | ||
| Gene3D | 1 | 193 | 193 | 2.1E-64 | – | |
| SMART | 7 | 203 | 197 | 1.4E-57 | ||
| Pfam | 13 | 177 | 165 | 5.8E-45 | ||
| ProSiteProfiles | 19 | 189 | 171 | 29.214 | ||
| SUPERFAMILY | 58 | 342 | 285 | 6.35E-71 | ||
| ProSitePatterns | 135 | 143 | 9 | - | ||
| Gene3D | 194 | 362 | 169 | 1.0E-54 | – | |
| ProSiteProfiles | 199 | 359 | 161 | 24.133 | ||
| CDD | 200 | 329 | 130 | 2.2868E-57 | – | |
| Pfam | 214 | 320 | 107 | 4.1E-28 | ||
| SMART | 239 | 320 | 82 | 1.2E-30 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi3g1v0381000.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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