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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0384100 |
| Transcript ID | LotjaGi3g1v0384100.6 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SKP1 family protein; TAIR: AT3G61415.2 SKP1-like 21; Swiss-Prot: sp|Q8LF97|ASK21_ARATH SKP1-like protein 21; TrEMBL-Plants: tr|I1KI94|I1KI94_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0384100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:77852179..77852976) extracted from Lotus japonicus Gifu genome v1.2.
ATTGACATTATACTGTTACTTGTTTGCATTTCCAGATGATGAAGCCTTATGTATGGCTTCAAACGTCCGATGATTCAATC CAACAAGTGGAACAAGAAATTGCAATGTTTTGCCCACTGATATGCCAAGAAATTATACAAAAAGGCACCGGATCTTCCAA GAACTGTGCAATATGTCTTCCTCAACAAGTCAGTCCTGCTATGTTGAGCTTAATTCTTGATTATTGTCGATTCCATCAAG TACCAGGCCGCTCAAACAAGGTTCTACCAGTTTCTTCCACGCACTTAACTTGTTATTTTCTTCTTCTAGACTAGATGATC CATGTCTTAGTGATGATATTAAAGGTTATTTGACTTGGGAATCAATCTTTTATATAGGAACGAAAGTCTTATGATGAGAA ATTCGTTAGGATAGACACAGAAAGGCTCTGTGAGTTAACGTCTGCTGCAGACAGCCTTCAGTTAAAGCCACTGGTTGATC TTACCAGTCGTGCACTTGCTCGAATAATTGAAGGGAAAACGCCGGAGGAGATACGTGAGATATTTCATTTGCCTGATGAC CTTACAGAGGTGTCTGGTGCTTGTGAGACTCTGTATGCCAATTATATCTTCTTGAATTTTCAGTTTTCATTTCTTACATG TTCTTTTGATCCAGGAAGAGAAGTTGGAGCCCTTGAGGAACATAACGGATGATCCAAGGATCAGGCTTTTAAACCGTTTG TATGCCAAAAAACGGAAAGAACTAAAGGAGCGTGGAAGGTTAAAGGTGCCATTGAATTGTTTCTTACTTTTTTTCTAA
CDS sequence (LotjaGi3g1v0384100.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAAGCCTTATGTATGGCTTCAAACGTCCGATGATTCAATCCAACAAGTGGAACAAGAAATTGCAATGTTTTGCCC ACTGATATGCCAAGAAATTATACAAAAAGGCACCGGATCTTCCAAGAACTGTGCAATATGTCTTCCTCAACAAGTCAGTC CTGCTATGTTGAGCTTAATTCTTGATTATTGTCGATTCCATCAAGTACCAGGCCGCTCAAACAAGGAACGAAAGTCTTAT GATGAGAAATTCGTTAGGATAGACACAGAAAGGCTCTGTGAGTTAACGTCTGCTGCAGACAGCCTTCAGTTAAAGCCACT GGTTGATCTTACCAGTCGTGCACTTGCTCGAATAATTGAAGGGAAAACGCCGGAGGAGATACGTGAGATATTTCATTTGC CTGATGACCTTACAGAGGAAGAGAAGTTGGAGCCCTTGAGGAACATAACGGATGATCCAAGGATCAGGCTTTTAAACCGT TTGTATGCCAAAAAACGGAAAGAACTAAAGGAGCGTGGAAGGTTAAAGGTGCCATTGAATTGTTTCTTACTTTTTTTCTA A
Protein sequence (LotjaGi3g1v0384100.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMKPYVWLQTSDDSIQQVEQEIAMFCPLICQEIIQKGTGSSKNCAICLPQQVSPAMLSLILDYCRFHQVPGRSNKERKSY DEKFVRIDTERLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLRNITDDPRIRLLNR LYAKKRKELKERGRLKVPLNCFLLFF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 174 | 174 | 2.2E-118 | – | |
| PANTHER | 1 | 174 | 174 | 2.2E-118 | – | |
| SMART | 3 | 104 | 102 | 4.9E-27 | ||
| Gene3D | 4 | 149 | 146 | 3.5E-32 | – | |
| SUPERFAMILY | 4 | 68 | 65 | 1.81E-9 | ||
| CDD | 5 | 119 | 115 | 2.5896E-13 | – | |
| Pfam | 6 | 68 | 63 | 1.9E-5 | ||
| SUPERFAMILY | 78 | 147 | 70 | 8.5E-18 | ||
| Pfam | 105 | 142 | 38 | 4.4E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. |
Expression pattern of LotjaGi3g1v0384100.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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