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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR036296
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We have found 27 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 7.386s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0048300_LC.1
n.a. LOB domain family protein; TAIR: AT2G25700.1 SKP1-like 3; Swiss-Prot: sp|Q9SL93|ASK3_ARATH SKP1-like protein 3; TrEMBL-Plants: tr|I3SSE0|I3SSE0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0048300_LC LjG1.1_chr1 6614623 6618154 -
2 domain predictions
1 GO term
LotjaGi1g1v0477300.1
n.a. SKP1 family protein; TAIR: AT3G61415.1 SKP1-like 21; Swiss-Prot: sp|Q8LF97|ASK21_ARATH SKP1-like protein 21; TrEMBL-Plants: tr|I1L6J4|I1L6J4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0477300 LjG1.1_chr1 98902647 98913562 -
2 domain predictions
1 GO term
LotjaGi2g1v0297400.1
n.a. SKP1-like protein; TAIR: AT1G75950.1 S phase kinase-associated protein 1; Swiss-Prot: sp|Q39255|SKP1A_ARATH SKP1-like protein 1A; TrEMBL-Plants: tr|T2DMS9|T2DMS9_PHAVU SKP1-like protein; Found in the gene: LotjaGi2g1v0297400 LjG1.1_chr2 77229502 77230768 -
2 domain predictions
1 GO term
LotjaGi2g1v0379100.1
n.a. SKP1-like protein; TAIR: AT1G75950.1 S phase kinase-associated protein 1; Swiss-Prot: sp|Q39255|SKP1A_ARATH SKP1-like protein 1A; TrEMBL-Plants: tr|I3SWX0|I3SWX0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0379100 LjG1.1_chr2 87584290 87585617 -
2 domain predictions
1 GO term
LotjaGi2g1v0379100.2
n.a. SKP1-like protein; TAIR: AT4G35920.1 PLAC8 family protein; Swiss-Prot: sp|B6SJQ0|CNR13_MAIZE Cell number regulator 13; TrEMBL-Plants: tr|I1J8I6|I1J8I6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0379100 LjG1.1_chr2 87584290 87595466 -
2 domain predictions
1 GO term
LotjaGi3g1v0299300_LC.1
n.a. Ethylene-responsive transcription factor, putative; TAIR: AT5G47230.1 ethylene responsive element binding factor 5; Swiss-Prot: sp|O80341|EF102_ARATH Ethylene-responsive transcription factor 5; TrEMBL-Plants: tr|I1LGT2|I1LGT2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0299300_LC LjG1.1_chr3 62428968 62431607 -
2 domain predictions
1 GO term
LotjaGi3g1v0344100.1
n.a. SKP1; TAIR: AT1G20140.1 SKP1-like 4; Swiss-Prot: sp|Q9LNT9|ASK4_ARATH SKP1-like protein 4; TrEMBL-Plants: tr|A0A1J7H518|A0A1J7H518_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0344100 LjG1.1_chr3 72146014 72146904 +
2 domain predictions
1 GO term
LotjaGi3g1v0344200_LC.1
n.a. SKP1; TAIR: AT2G03170.1 SKP1-like 14; Swiss-Prot: sp|O81057|ASK14_ARATH SKP1-like protein 14; TrEMBL-Plants: tr|I3SE65|I3SE65_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0344200_LC LjG1.1_chr3 72176497 72177551 +
2 domain predictions
1 GO term
LotjaGi3g1v0384100.1
n.a. SKP1 family protein; TAIR: AT3G61415.1 SKP1-like 21; Swiss-Prot: sp|Q8LF97|ASK21_ARATH SKP1-like protein 21; TrEMBL-Plants: tr|A0A0S3SZ27|A0A0S3SZ27_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0384100 LjG1.1_chr3 77846027 77855353 -
2 domain predictions
1 GO term
LotjaGi3g1v0384100.2
n.a. SKP1 family protein; TAIR: AT3G61415.1 SKP1-like 21; Swiss-Prot: sp|Q8LF97|ASK21_ARATH SKP1-like protein 21; TrEMBL-Plants: tr|I1KI94|I1KI94_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0384100 LjG1.1_chr3 77847767 77852979 -
2 domain predictions
1 GO term
LotjaGi3g1v0384100.3
n.a. SKP1 family protein; TAIR: AT3G61415.1 SKP1-like 21; Swiss-Prot: sp|Q8LF97|ASK21_ARATH SKP1-like protein 21; TrEMBL-Plants: tr|I1KI94|I1KI94_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0384100 LjG1.1_chr3 77847812 77852979 -
2 domain predictions
1 GO term
LotjaGi3g1v0384100.4
n.a. SKP1 family protein; TAIR: AT3G61415.1 SKP1-like 21; Swiss-Prot: sp|Q8LF97|ASK21_ARATH SKP1-like protein 21; TrEMBL-Plants: tr|K7KC10|K7KC10_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0384100 LjG1.1_chr3 77847829 77852975 -
2 domain predictions
1 GO term
LotjaGi3g1v0384100.5
n.a. SKP1 family protein; TAIR: AT2G45950.1 SKP1-like 20; Swiss-Prot: sp|Q8LF97|ASK21_ARATH SKP1-like protein 21; TrEMBL-Plants: tr|I1KI94|I1KI94_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0384100 LjG1.1_chr3 77847829 77852975 -
2 domain predictions
1 GO term
LotjaGi3g1v0384100.6
n.a. SKP1 family protein; TAIR: AT3G61415.2 SKP1-like 21; Swiss-Prot: sp|Q8LF97|ASK21_ARATH SKP1-like protein 21; TrEMBL-Plants: tr|I1KI94|I1KI94_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0384100 LjG1.1_chr3 77852179 77852976 -
2 domain predictions
1 GO term
LotjaGi4g1v0131700.1
n.a. SKP1-like protein; TAIR: AT1G75950.1 S phase kinase-associated protein 1; Swiss-Prot: sp|Q39255|SKP1A_ARATH SKP1-like protein 1A; TrEMBL-Plants: tr|A0A1J7G3F5|A0A1J7G3F5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0131700 LjG1.1_chr4 19272074 19274098 +
2 domain predictions
1 GO term
LotjaGi4g1v0232700_LC.1
n.a. SKP1-like protein; TAIR: AT1G75950.1 S phase kinase-associated protein 1; Swiss-Prot: sp|Q39255|SKP1A_ARATH SKP1-like protein 1A; TrEMBL-Plants: tr|F6GZT1|F6GZT1_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi4g1v0232700_LC LjG1.1_chr4 54389436 54389900 +
2 domain predictions
1 GO term
LotjaGi4g1v0343500.1
n.a. Cullin 1, putative; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|I3SL73|I3SL73_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0343500 LjG1.1_chr4 72328181 72331712 -
2 domain predictions
1 GO term
LotjaGi4g1v0343500.2
n.a. Cullin 1, putative; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|I3SL73|I3SL73_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0343500 LjG1.1_chr4 72328323 72331676 -
2 domain predictions
1 GO term
LotjaGi4g1v0344000.1
n.a. Cullin 1, putative; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|I3SL73|I3SL73_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0344000 LjG1.1_chr4 72376367 72386661 +
2 domain predictions
1 GO term
LotjaGi4g1v0344100.1
n.a. Cullin 1, putative; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|I3SKE1|I3SKE1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0344100 LjG1.1_chr4 72395807 72402669 +
2 domain predictions
1 GO term
LotjaGi4g1v0344100.2
n.a. Cullin 1, putative; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|I3SKE1|I3SKE1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0344100 LjG1.1_chr4 72395844 72402259 +
2 domain predictions
1 GO term
LotjaGi4g1v0344200.1
n.a. Cullin 1, putative; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|I3SKE1|I3SKE1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0344200 LjG1.1_chr4 72404321 72410983 +
2 domain predictions
1 GO term
LotjaGi4g1v0344200.2
n.a. Cullin 1, putative; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|I3SKE1|I3SKE1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0344200 LjG1.1_chr4 72404347 72410887 +
2 domain predictions
1 GO term
LotjaGi4g1v0344200.3
n.a. Cullin 1, putative; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|I3SKE1|I3SKE1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0344200 LjG1.1_chr4 72404347 72410887 +
2 domain predictions
1 GO term
LotjaGi5g1v0006400.1
n.a. SKP1-like protein; TAIR: AT1G75950.1 S phase kinase-associated protein 1; Swiss-Prot: sp|Q39255|SKP1A_ARATH SKP1-like protein 1A; TrEMBL-Plants: tr|I3SES0|I3SES0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0006400 LjG1.1_chr5 1500657 1501843 +
2 domain predictions
1 GO term
LotjaGi5g1v0348400.1
n.a. SKP1-like protein; TAIR: AT2G25700.1 SKP1-like 3; Swiss-Prot: sp|Q9SL93|ASK3_ARATH SKP1-like protein 3; TrEMBL-Plants: tr|A0A076JVB0|A0A076JVB0_9ROSA S-phase kinase-associated protein 1-like protein 3; Found in the gene: LotjaGi5g1v0348400 LjG1.1_chr5 66432017 66432769 +
2 domain predictions
1 GO term
LotjaGi5g1v0348500.1
n.a. SKP1-like protein; TAIR: AT2G25700.1 SKP1-like 3; Swiss-Prot: sp|Q9SL93|ASK3_ARATH SKP1-like protein 3; TrEMBL-Plants: tr|A0A076JVB0|A0A076JVB0_9ROSA S-phase kinase-associated protein 1-like protein 3; Found in the gene: LotjaGi5g1v0348500 LjG1.1_chr5 66438085 66438942 +
2 domain predictions
1 GO term