Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0386200 |
| Transcript ID | LotjaGi3g1v0386200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Mechanosensitive ion channel protein; TAIR: AT4G00290.1 Mechanosensitive ion channel protein; Swiss-Prot: sp|Q8VZL4|MSL1_ARATH Mechanosensitive ion channel protein 1, mitochondrial; TrEMBL-Plants: tr|A0A0S3SYM0|A0A0S3SYM0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0386200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:78198489..78203240) extracted from Lotus japonicus Gifu genome v1.2.
TGCGTTACTCGAACAATGCCGTTGTTGAATTGTTGAGTTGATAGCTTAGTTTGCTTAACAATGGCGTCTGTTAGGTTTTC CCATTTAAGACATCTACATAGTTCAATCAATGGTTCTCTTAACACGAAGCTAGTTCCACAGTACCAAAATCACCACAATG TAGCTATGAACCTTGCAAGGTTGCCTTGTGATTTGTTGTCCCGTCCTTACTCCAAAGGAGAGTCACAGTCACCTAGGGTT TTTGCTCAGAACCAGTTTACCAATGCCTCATTTTATCCTAGGTCATCTAGCTTTTGTCTCCAGGGTACTATTCCTTTTGC TTCCATGACCCACATGTTGAGTAGCCGAAGTTATTCGTCGTCGTTGGGTGGAAATGGTAGCAAGGGTGGTGGTGACACAC AAGTTTCTGCTGGTTCTGGTGTGAGTGATATGAATGCTGGTGGTGGTGGTGATTGGGCTGAGAGGGTTAAAGATACTTGG AAGAGTGTGGTAGAGACGGCATCGTATGCGGGACAAAAGGTTAAAGAAGCTTCTGATGATCTTACTCCACATGCTCAACA GTTGCTTGATTCACATCCGTATCTTAACGCGGTGGTTATTCCGGTTGGTGGTACTTTAACTGCTACTCTAGTAGCTTGGT TCTTGATGCCTACGATTTTGAGGAAATTTCACAAATATGCTATGCAAGGTCCTGTTGCTCTAATTCCAGGAAGCTTGTTT GGGGAACCAGTTCCTTATGAGAAAAGCTTTTGGGGTGCTCTGGAAGACCCAGTGCGATATCTAGTTACCTTCATGGCATT CTCACAAATGTTAGTGGGTTTTTTAAAAGTTTTAGAGATATGCCTTACTGTTTTCTCATATGTGTTTTTTCACTACATAG TTTACTTTGATTTCCAGTGGTGTAATGGTAGCTCCAACAACCATAGCCTCGCAATATCTTGCACCAGCTTGGAGGGGTGC GGTGATACTTTCGTTTGTATGGTTTCTGCATAGATGGAAAACTAATGTTTTTGCACGGACATTGTCTGGTCAAAATTCAC TTGGACTTGATAGGGAGAAATTACTTGCTCTAGACAAAATCTCATCTGTTGGTCTATTTGTGATTGGTATAATGGCTTTG GCTGAGGCTTGTGGTGTGGCTGTGCAATCTATTGTAACTGTTGGTGGTATAGGAGGTAAATCTTTTTCTTTGGTTGCTTC CCATTCCTTGACGAGTTTCACTTGTTTATGTATTTATTTTTATTTTTCTATGATAAAATAAGTAATGGAAGATTTCATGG TTCTGTATATCTTTTTACAGGAGTGGCGAGTGCTTTTGCTGCCAGAGATATTCTTGGCAATGTGTTCAGTGGTTTATCTA TGCAGTTTTCTAAGCCCTTTTCAATTGGAGATACAATAAAAGTATGTTGATTCAGTAGGTGCAACTTAATGTCCAATCCT GTCTTACTTTTTATGGAAAAATAATTTTCTGAACCATGGTCTTTCACTCTTGCTATCTGTTTTGCATGTGAATGTCCTAT TCGTACTTATGTTATCTAGGTGAGGAATGGCCATTACATTTCACTGCTTAGTACTTACACAGTTTCACGTTTGGTAATAG AAATATTACACTCATTAGTGGTGATTTGTGTCGATGGTCCATTATGTATTATATGGTATGTAATGCTATGTAGATGTTGC ATGTACGTCCAGGGTTAGGATTAGGGTTAAAACATTAGAGGGGCCTAAATAAAAACAAATTTAGGTGAGGGTTTAAAAAA TTAAAATTCAAGGGCCCTAACCCTAACATATTTATTACGAGATTATCAGTCAATGCATAGACAATATTACAAAATTTGGA AATTTTGGAGGATCACATGCTAGAATGAAGGTCTGCTTCTGTTTACATCCTATATTTCTCTTCTTAAATGTGTATGAGAA ATTGTACAAATTGCAGGCTGGCTCGATAGAGGGTCAAGTGGTGGAAATGGGTCTTACTACCACATCTTTACTGAGTGCTG AGAAGTTCCCAGTCATAGTGCCAAACTCCTTATTCTCTAGCCAGGTGGGTAATCTCTTCTCCCTCCTCACTTCCACTGCA GTCACTTAAGCGAAGCAGAGAAGTGAGCTCCACAATTTAACATTGGTGGAGCCTACGTATATTGCTTCTCTGCTTTCTCT AACTGCAAGTATGCCATGACCTCAAAAGAGCCAAATCTTTTCTGAACACTCAAACATTCCGAACCAATCACGTTGATCTT TGGCACAAATATATCTTAAAAAGATATACAACTTGCTGGGAAGTGCTCACTTCATCTGCATGTCTGATTGTCTGTTGCTC ATAGTTGATTGTAGTATTTAAACTAAGTACTCTAGGTTCTCCTATGACTCATCATGTTAGAGTTTTGTTGTTTGACTTTC CAAGCAATAGTTTGAGTAGGCTTCTTGTATTCTTGTTCTTATAGTTTGTGTATAATTCTGTTTGTTAGATTGCGGTGATC TTTTCTATCCTTGGCTTTTTAAATCATAATATTCAAGGAAAAAGATAAATACGAAGATGAGTATCATGGAAGAAAAAGTT CTGGGATGTGAATGTATTTCAAACGAAATATGTTTGTTGCTTATCATTAAGAGAAAAAAATACTGGGAAAATAAGTAAAA ATATTTTTTGGTTTCATTCATTAATCATTACTCTCTTGGTCAAATAATTTGATAATAAATTACCATGTCCTTGTCCTTCA TGGTTAAATTCTGTTAGATGTTGTCTTTACACACATCTAACCATTATTTTCATCAGTTTTTAAGATGTCTAATTTACATA GTTGATTGGACCTATTTTTAAATTAATTTTTTTATTCCCTTTTTTCTGGACTTGAATATATCTTCTAGGCATCTTTTCCT CCTCAGAATGTATAAATTTTGAAGCTCGCACTGAGGTTTACACATCTGCACGAACACACAAAAACTGATGCAAAAGCTTT TTCCTTAATCTTTATAAAAATGTTTCTTGCTTAAGCTTTTGATCTTGAGCTTATGATCTACCTACTGCTTCCGTCATCAT AGTTACACCCTTCTTATTGCTGCTAACTTTGTAGGTCATTGTGAACAAATCCCGTGCTGAATACCGTGCCATTATTACGA AAATTCCTCTGCAAATTGAGGATTTAAGTAAGATTCCTCAGATATCAGGCGATGTAAAAAACATGTTAACATCAAATGCG AAGGTTTTCCTAGGAAAAGATGTTCCCTACTGTTTCTTGTCGCGAGTAGAAAGTTCATATGCAGAATTGACTCTTGGATA CAACCTCAAGCACATGGTATGCCACTCTTCTGAATTTATTCACAATATGCTTGTTCATACTCAATGAATCTTTTTTGTTC ATAAAATGCTTTTGGAAAAATTATTCTGAAATGGCTTTAAATATTAGAAGTTGGCATACTTTCATATTAAAACACTAACA ATTACCTACTCTGTGTCCTGGTTAGGGAGTACAATATGGAGATGATATGATTATGTTTGAAGTTTCCTTTGCTTCAATTT ATATTGCATTAATTTGGCTTGGATTTCCAGCTTGTTTTGCATTTGTTTTGACTTTTGACTGATCAAGAAGCATGCAAAAG ATAGGTCTTTGTGTCTTATCACCAATAGTGAAATATAAATTAATATCTAATAGAAAAACAGCAAGGTGCAGTAGAAGTAA TGACATGGCCAACTGTCCTGGGAGTCTCGTGTCATTTTATTTTCTGATAGATTCTGAAATAGAGATAAGTGGATCTCTGA GCTAAAAACTTCAGATATGAAGTTGCATAGCTTATGTTTTATTCACCTGGTCTGAGATAAAGTGTATGTCAATCAGTTCT TATTCCTGCTGGAGTGCTGGGTTTCTGATTTCCACTTGATGCCAAATGCTTAAGTGTGTGTTAGGATGGATACACTTGAG TGCAACGTGAATGAACTTTCATTTCAATTCATAAGAAGAGTTTTGTCCACTTTTTTATCTTGAAGTGCATGCTAATGTAT GTTTACTTTAGTGGCAATGGATTTTTAAATTTTAAACATAGTCTAAGTTGATAGGAAGTGAGTCAATTATATATGTTAGC TTTAATAATCCTTGCGGGGGTTTGGAAACTCAATTAATATAAAGTTTAGGCAACAGACATTTCATAATTATTACGCCAGT TGTTGTGCAAGGTTTACATGATAACTTGGTAAGGTCCTTTTATGAAAATGTGTGCACCCTGCTGCACCTTCAAGAAATGT AGTTAGTTAAATTGGAGTTTAGGATACTGGTCGAGACTGCTGAACTATTTCCATAGCTTTTAGTAATTGGTTTTTATAAG AAGGTATTATTGTTTTTCGAACAGTGATCCAGTATAGTGCTTTCTATCTTTTGAACTTCATTATCTAGTGCTGTTTTAGG CAATGGTGATATATCTTTATGCTGAAATACCTCCATATTTGGTTGAACATCTTCTTATCCCTCATCATTCTTGCAGCGCA AAGATGAGTTATACTCTGCAGAACAAGATATTCTCCTGCAGGCCGTTCAGATCATTAAAAATCATGGGATTGCCCTTGGC AGCACAGGGCAGGGCATGTCTACTATGTAATGATGACAATTTTACTAGTACAAGCTTTGCAGGGATACTCATTTTTGTCA TTGGTTGCAGCCAAATTAATTTTGTAACTAATACTAGTTGGGCCTGTATAGTTGGATCATTTGGCTTCAGGTTTTAATTG ATTTACTAAACAATTTAAAATTTTACATCTAT
CDS sequence (LotjaGi3g1v0386200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTCTGTTAGGTTTTCCCATTTAAGACATCTACATAGTTCAATCAATGGTTCTCTTAACACGAAGCTAGTTCCACA GTACCAAAATCACCACAATGTAGCTATGAACCTTGCAAGGTTGCCTTGTGATTTGTTGTCCCGTCCTTACTCCAAAGGAG AGTCACAGTCACCTAGGGTTTTTGCTCAGAACCAGTTTACCAATGCCTCATTTTATCCTAGGTCATCTAGCTTTTGTCTC CAGGGTACTATTCCTTTTGCTTCCATGACCCACATGTTGAGTAGCCGAAGTTATTCGTCGTCGTTGGGTGGAAATGGTAG CAAGGGTGGTGGTGACACACAAGTTTCTGCTGGTTCTGGTGTGAGTGATATGAATGCTGGTGGTGGTGGTGATTGGGCTG AGAGGGTTAAAGATACTTGGAAGAGTGTGGTAGAGACGGCATCGTATGCGGGACAAAAGGTTAAAGAAGCTTCTGATGAT CTTACTCCACATGCTCAACAGTTGCTTGATTCACATCCGTATCTTAACGCGGTGGTTATTCCGGTTGGTGGTACTTTAAC TGCTACTCTAGTAGCTTGGTTCTTGATGCCTACGATTTTGAGGAAATTTCACAAATATGCTATGCAAGGTCCTGTTGCTC TAATTCCAGGAAGCTTGTTTGGGGAACCAGTTCCTTATGAGAAAAGCTTTTGGGGTGCTCTGGAAGACCCAGTGCGATAT CTAGTTACCTTCATGGCATTCTCACAAATTGGTGTAATGGTAGCTCCAACAACCATAGCCTCGCAATATCTTGCACCAGC TTGGAGGGGTGCGGTGATACTTTCGTTTGTATGGTTTCTGCATAGATGGAAAACTAATGTTTTTGCACGGACATTGTCTG GTCAAAATTCACTTGGACTTGATAGGGAGAAATTACTTGCTCTAGACAAAATCTCATCTGTTGGTCTATTTGTGATTGGT ATAATGGCTTTGGCTGAGGCTTGTGGTGTGGCTGTGCAATCTATTGTAACTGTTGGTGGTATAGGAGGAGTGGCGAGTGC TTTTGCTGCCAGAGATATTCTTGGCAATGTGTTCAGTGGTTTATCTATGCAGTTTTCTAAGCCCTTTTCAATTGGAGATA CAATAAAAGTCATTGTGAACAAATCCCGTGCTGAATACCGTGCCATTATTACGAAAATTCCTCTGCAAATTGAGGATTTA AGTAAGATTCCTCAGATATCAGGCGATGTAAAAAACATGTTAACATCAAATGCGAAGGTTTTCCTAGGAAAAGATGTTCC CTACTGTTTCTTGTCGCGAGTAGAAAGTTCATATGCAGAATTGACTCTTGGATACAACCTCAAGCACATGCGCAAAGATG AGTTATACTCTGCAGAACAAGATATTCTCCTGCAGGCCGTTCAGATCATTAAAAATCATGGGATTGCCCTTGGCAGCACA GGGCAGGGCATGTCTACTATGTAA
Protein sequence (LotjaGi3g1v0386200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASVRFSHLRHLHSSINGSLNTKLVPQYQNHHNVAMNLARLPCDLLSRPYSKGESQSPRVFAQNQFTNASFYPRSSSFCL QGTIPFASMTHMLSSRSYSSSLGGNGSKGGGDTQVSAGSGVSDMNAGGGGDWAERVKDTWKSVVETASYAGQKVKEASDD LTPHAQQLLDSHPYLNAVVIPVGGTLTATLVAWFLMPTILRKFHKYAMQGPVALIPGSLFGEPVPYEKSFWGALEDPVRY LVTFMAFSQIGVMVAPTTIASQYLAPAWRGAVILSFVWFLHRWKTNVFARTLSGQNSLGLDREKLLALDKISSVGLFVIG IMALAEACGVAVQSIVTVGGIGGVASAFAARDILGNVFSGLSMQFSKPFSIGDTIKVIVNKSRAEYRAIITKIPLQIEDL SKIPQISGDVKNMLTSNAKVFLGKDVPYCFLSRVESSYAELTLGYNLKHMRKDELYSAEQDILLQAVQIIKNHGIALGST GQGMSTM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 173 | 173 | - | – | |
| MobiDBLite | 100 | 121 | 22 | - | – | |
| MobiDBLite | 100 | 130 | 31 | - | – | |
| PANTHER | 126 | 376 | 251 | 3.3E-155 | – | |
| PANTHER | 126 | 376 | 251 | 3.3E-155 | – | |
| Phobius | 174 | 196 | 23 | - | – | |
| TMHMM | 178 | 200 | 23 | - | – | |
| Phobius | 197 | 237 | 41 | - | – | |
| TMHMM | 238 | 260 | 23 | - | – | |
| Phobius | 238 | 260 | 23 | - | – | |
| Phobius | 261 | 265 | 5 | - | – | |
| TMHMM | 264 | 281 | 18 | - | – | |
| Phobius | 266 | 284 | 19 | - | – | |
| SUPERFAMILY | 267 | 350 | 84 | 1.7E-8 | ||
| Phobius | 285 | 304 | 20 | - | – | |
| Phobius | 305 | 325 | 21 | - | – | |
| Pfam | 310 | 377 | 68 | 4.0E-13 | ||
| TMHMM | 314 | 336 | 23 | - | – | |
| Phobius | 326 | 330 | 5 | - | – | |
| Phobius | 331 | 350 | 20 | - | – | |
| Phobius | 351 | 487 | 137 | - | – | |
| PANTHER | 376 | 481 | 106 | 3.3E-155 | – | |
| PANTHER | 376 | 481 | 106 | 3.3E-155 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi3g1v0386200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…