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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0411200 |
| Transcript ID | LotjaGi3g1v0411200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vesicle transport protein-like; TAIR: AT1G11890.1 Synaptobrevin family protein; Swiss-Prot: sp|Q94AU2|SEC22_ARATH 25.3 kDa vesicle transport protein; TrEMBL-Plants: tr|I3SIK6|I3SIK6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0411200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:81491094..81494627) extracted from Lotus japonicus Gifu genome v1.2.
ATGGTTAAGTTGACTATGATTGCTCGTGTTACTGATGGTCTTCCACTAGCTGAAGGACTGGATGACGGTCGTGATATGAA AGATTCTGAGTATTACAAACAACAAGTCAAGGCTTTGTTTAAGAATCTTTCAAGAGGGCATAACGAGGCATCAAGGATGT CTGTTGAAAGTGGCCCTTATTTTTTCCAGTATCCTTCCTCCTCACAAATATTCAATTCTGTCTGTGGTAGTCAAACAGGA ATTGCTTGATTGTCCTATACTTCTGCTTGTTTTGGTATTATATTGCAAGATTCATCTAATTGATATATTAGAATTGTGGA GGTGTCTACGATTTGATGTTATTTTATGTGCTGTTATCTTCCGGTTAATGCTGGACATCCCATCATCTGACATGAGATGC TTGCATGGGCATGACTTTATTTATTCACATGCTTATCTTAATCGACATATCTGCTAATCTGTATTTTGGACATTAGAAGA AAGTATTCTTTATTTTATTTGTTTTGATGGGTATCTCATTTCTCTGTTGTATTGCGATTCAGCTGGTGCTTTTATATATG GTATGCATGTCAAAAACGGAAAACTATCTTGCTGCTCCGGAACCTTACTTCCGTAACTATTTGACTAGTCACACCCTTGT CTTCAATTGTCTTTGAATTTTGAGATTTAGTTGCATTTTAAAAATGTATTTGTATTGTCTTTATTTTGGAATAGTTTCAA AGCCAAAAGTGTCCTTGACAGAAACTTAGCTATATTATAGAAGGACGGGTCTGTTACTTGACAATGTGTGATCGTGCTTA CCCTAAGAAACTAGCCTTTCAATATCTTGAGGAGCTCAGGAATGAGTTTGAGCGTGTAAATGGCTCTCAAATTGAAACTG CTGCCAGACCTTATGCCTTCATTAAGTTTGGTAGGTATCAATTTCTATGCTGTCATGTTCCGTTAATAGTGCCTTCTCCC TTTCCAAAGGTGCTTAATGTCTCTTTTTTTCTTTTTAAATTTTAAGACACGTTTATACAGAAGACAAAGAAACTTTACCA GGATACCCATACTCAGCGTAATATTTCAAAGTTGAACGATGAACTCTATGAAGTCCATCAGATTATGACTCGAAATGTGC AGGAGGTTCTTGGTGTTGGTGAACAGTTGGATCGTAAGATTTTTTTCATTGTATTTTTTAGTAATTTAATTTTAGTGTTC TGTCTTCTGATTTCTTGGGATGCAACATGTAAATATATAGTTACAAACCTCTTTAATTTGAACATGATATCAAAATGATT GTCTCTACTATGTATACATCCACTTTAGTTGTATTTTTCTGATTGCTATATTTCTAATAAATTCAGATATATATGAAAAA TGAAGTATGGGTTTAGAGCTGTAATATGGCATATGTTTCTGCTGCTAACATTTGTTTTTTCTTATCAGAATGATCAGCAT ATATTTTTGAGCTTGCTTGCTTAGTTCTGTAGTAAACTAATCTCAGTTGAGATTTATGAGCCTGTTTGTTTGTTTGCTTG CTTTTTTCCCAATAAAATAGCCACTTCTAGAAATTTGTGTTTGTTTAAACTTTTGAAAAATTAGAAAATGAAAAAAAAAA CAGATTTTTTATTATTATTATGAGTAGCTTTTGAGAAAAAAAGACGCTATAATTGTGATTCCTTTTTAAAATATTAATTG TAGCCCAATGAATAATATAGCTTCTGTTTTAAATAAAATCTCTCAAAATAAATTACTTTTTTTATAGAACCTTTAAATCA GTATTTTCAACCTCTAACAAATGAGCCCTATATTAGAATTCAAGTTATGCCTAACTCTACCCCCAAAGCTAGCTTAGAGG TGAGGATTGCTCTTCCCTATACAATGACTTATTTAGCCATTTCCCTAGTTAGTGTGGGACCTTAACATACTTGTTAGACA CTTTGCTTGGAAAGAGATAAAAATGACATGATTAACAATGCCCAAGGTTCTATCCTTCTAAACTTGTCTATGAAACTAGT TTTTCCCATAGAAATCTTTGTCAGATACTTTCAAGTTGCAGCTATGATCTTCAGTTAATGGATAATTACAATGTTAAATT AAAAGCTAGAGATGCCTTTGTCCCTCTGATGGTTTGAGAAGGACTGCTCTAGTAATACAGCAATCAAAGTGTTTTATTAA ATGGAGTGTTGGTTTTATCTTGAAAAGAACAGCTTCAAATCATTTTCTGTCTTAAAGAACTTTCTTACTAACTTCTGCTA AACTTTCATAGTTCCACACTTTCACCTTCATGGTCCGTCCTATTAGTATTTGATGATCTCCTCTTATTTCCACTTCTCAT GCAGCTTCAATTTCTATTTGTATGTTTTGGTATTTTTACGGTTTTTACTTCCTTGTGCATGTAACATATAAATTTTATGT TCTACATTTGATTTCAAATTCTAATATGCAGAGGTCAGCCAAATGTCTAGTCACTTATCATCTGAATCTCGCATATATGC TGATAAGGCTAGAGATTTAAATCGACAGGTTAGTCATTTTCAGCTTTACTGCATCATGCACATCATATATCTAATAGTTC AGGTGATACAGCCATTTCCATTTGATTTTAGATGCATGCTAGTTTTGTTTACCTCTGAAACTATACCTGCTGCAGTTGTA AATTACTCTGTGCTAGGATCTGCTTTTATAATTCAGATAGAGGAAGCATGGAATGCTGTGGATTTTGTCATATAGCTAAT ACAATTAAAGCACTTTATTGGCTTTTACCTAAGTATCATTTGATGGATTTGAAAAATTACATTTTCTTTTCTGTTCAGCT ACGGCGCCTTTGTCTAGCTGGTATAATTCTGATTTAAATCTGGGACTGTGTTTGCGTTAATTTAGTTTAAAATGTTTGTA GCTTGTATTCCTTTGAACTTTTTTTATGTGCTAGTTTCAGTTTGTGAGTTTTGTGTACCCAGTGGTTAATTTGTAGCATT TGTTTGTGAAATAGAATTCTGACCAAAAGGGCTATCATCCAATGACAATACATTGCATCGTTTTATGGTCTTTTTATCTG TAAAAATGCGGCATGGACTACCTATGGCTGCAGATATTGTATAGGTTAATATAATAAGTTTCTTGGAGATTCTGTATGCA GATTTGAGATGTTCTACTTCTTATAACTGTTACTTGTGTTGAATACTTCCATGTTGTGTCATTTTTATTACTGTAGAAAA ATCCATATTTCCTGCTTCCCATTTCTCTCAATTTCCAATGGTGTTTTCTAGTGTGTGTTGGTGTGGGTCTGTATTCTATA ATACAAGCAACGTTAGCCCTCTAATGTTATTCAATGATTTGAGTTGATGGAACTGATAACCCTGCTTAGTGTTAGGATGA TGAGTTCCTTTGAAGTTTCTGGCTCATATTTGCATTCTAGTTATTCTCTGCATTGTGGATATATAACTTAAAATCAAATA TTTGCTGCAGGCTCTGATTCGGAAGTGGGCCCCTGTTGCTATTGTGTTAGGAGTTGTTTTTGTACTTTTCTGGCTCAAGA ATAAAATTTGGTGA
CDS sequence (LotjaGi3g1v0411200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTAAGTTGACTATGATTGCTCGTGTTACTGATGGTCTTCCACTAGCTGAAGGACTGGATGACGGTCGTGATATGAA AGATTCTGAGTATTACAAACAACAAGTCAAGGCTTTGTTTAAGAATCTTTCAAGAGGGCATAACGAGGCATCAAGGATGT CTGTTGAAAGTGGCCCTTATTTTTTCCACTATATTATAGAAGGACGGGTCTGTTACTTGACAATGTGTGATCGTGCTTAC CCTAAGAAACTAGCCTTTCAATATCTTGAGGAGCTCAGGAATGAGTTTGAGCGTGTAAATGGCTCTCAAATTGAAACTGC TGCCAGACCTTATGCCTTCATTAAGTTTGACACGTTTATACAGAAGACAAAGAAACTTTACCAGGATACCCATACTCAGC GTAATATTTCAAAGTTGAACGATGAACTCTATGAAGTCCATCAGATTATGACTCGAAATGTGCAGGAGGTTCTTGGTGTT GGTGAACAGTTGGATCAGGTCAGCCAAATGTCTAGTCACTTATCATCTGAATCTCGCATATATGCTGATAAGGCTAGAGA TTTAAATCGACAGGCTCTGATTCGGAAGTGGGCCCCTGTTGCTATTGTGTTAGGAGTTGTTTTTGTACTTTTCTGGCTCA AGAATAAAATTTGGTGA
Protein sequence (LotjaGi3g1v0411200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVKLTMIARVTDGLPLAEGLDDGRDMKDSEYYKQQVKALFKNLSRGHNEASRMSVESGPYFFHYIIEGRVCYLTMCDRAY PKKLAFQYLEELRNEFERVNGSQIETAARPYAFIKFDTFIQKTKKLYQDTHTQRNISKLNDELYEVHQIMTRNVQEVLGV GEQLDQVSQMSSHLSSESRIYADKARDLNRQALIRKWAPVAIVLGVVFVLFWLKNKIW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 127 | 127 | 1.1E-51 | – | |
| SUPERFAMILY | 1 | 128 | 128 | 4.17E-36 | ||
| Phobius | 1 | 192 | 192 | - | – | |
| PANTHER | 1 | 218 | 218 | 2.3E-139 | – | |
| PANTHER | 1 | 218 | 218 | 2.3E-139 | – | |
| CDD | 5 | 127 | 123 | 8.56476E-43 | – | |
| ProSiteProfiles | 6 | 120 | 115 | 30.603 | ||
| SMART | 35 | 119 | 85 | 4.9E-33 | ||
| Pfam | 37 | 118 | 82 | 4.9E-24 | ||
| Gene3D | 128 | 198 | 71 | 4.7E-12 | – | |
| SUPERFAMILY | 130 | 197 | 68 | 1.83E-13 | – | |
| Pfam | 133 | 213 | 81 | 1.7E-17 | ||
| CDD | 133 | 196 | 64 | 6.03879E-32 | – | |
| ProSiteProfiles | 135 | 195 | 61 | 13.833 | ||
| TMHMM | 193 | 212 | 20 | - | – | |
| Phobius | 193 | 213 | 21 | - | – | |
| Phobius | 214 | 218 | 5 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. |
Expression pattern of LotjaGi3g1v0411200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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