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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0414800 |
| Transcript ID | LotjaGi3g1v0414800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Germin-like protein; TAIR: AT5G20630.1 germin 3; Swiss-Prot: sp|Q9ZRA4|AB19A_PRUPE Auxin-binding protein ABP19a; TrEMBL-Plants: tr|I3S064|I3S064_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0414800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:81986829..81987455) extracted from Lotus japonicus Gifu genome v1.2.
ATGAACACAATTTACATTCTTTTCCTCTTCACTTTTCTCTCAACAACCTCCTATGCTTCTGTCAATGATTTGTGTGTAGC AGACTTTAAAGGTCCAAGCACCCCTTCCGGCTACCACTGCATGCCCCTCGCTAACTTAACCTCAGACGACTTCGTCTTCC ACGGCTTGGTTGCCGGAAACACCACAAACTCCTTCAACGCCGCCTTAACCTCCGCGTTTGTCACTGATTTCCCAGCCCTC AACGGCCTCGGCGTCTCCGCAGCAAGGTTGGACATAGCGAAAGGCGGTTCGATTCCGATGCACACGCACCCTGGTGCTAC TGAGTTGCTGATGATGGTGAAAGGTAAGATCACTGCGGGGTTCATGACACCTACCGCGCTTTACTCCAAGACGGTGAAGC CGGGAGATATCATGGTTTTCCCGCAGGGGATGTTGCATTTTCAGGTGAATTCTGGTGTGGGGACAGCTAATGCTTTTCTT GCTTTCAGTAGTGAGAACCCTGGTGCCCAGCTACTTGATCTTCTTCTGTTTGCTAATGGATTGGATTCTGATATTGTGGC GAAAACTACGTTTCTTGATCTTGCTCAAGTGAAGAAGCTTAAAGCTCGTTTTAATGGGAAAAACTAG
CDS sequence (LotjaGi3g1v0414800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACACAATTTACATTCTTTTCCTCTTCACTTTTCTCTCAACAACCTCCTATGCTTCTGTCAATGATTTGTGTGTAGC AGACTTTAAAGGTCCAAGCACCCCTTCCGGCTACCACTGCATGCCCCTCGCTAACTTAACCTCAGACGACTTCGTCTTCC ACGGCTTGGTTGCCGGAAACACCACAAACTCCTTCAACGCCGCCTTAACCTCCGCGTTTGTCACTGATTTCCCAGCCCTC AACGGCCTCGGCGTCTCCGCAGCAAGGTTGGACATAGCGAAAGGCGGTTCGATTCCGATGCACACGCACCCTGGTGCTAC TGAGTTGCTGATGATGGTGAAAGGTAAGATCACTGCGGGGTTCATGACACCTACCGCGCTTTACTCCAAGACGGTGAAGC CGGGAGATATCATGGTTTTCCCGCAGGGGATGTTGCATTTTCAGGTGAATTCTGGTGTGGGGACAGCTAATGCTTTTCTT GCTTTCAGTAGTGAGAACCCTGGTGCCCAGCTACTTGATCTTCTTCTGTTTGCTAATGGATTGGATTCTGATATTGTGGC GAAAACTACGTTTCTTGATCTTGCTCAAGTGAAGAAGCTTAAAGCTCGTTTTAATGGGAAAAACTAG
Protein sequence (LotjaGi3g1v0414800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNTIYILFLFTFLSTTSYASVNDLCVADFKGPSTPSGYHCMPLANLTSDDFVFHGLVAGNTTNSFNAALTSAFVTDFPAL NGLGVSAARLDIAKGGSIPMHTHPGATELLMMVKGKITAGFMTPTALYSKTVKPGDIMVFPQGMLHFQVNSGVGTANAFL AFSSENPGAQLLDLLLFANGLDSDIVAKTTFLDLAQVKKLKARFNGKN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 2 | 2 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 19 | 19 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 19 | 19 | - | – | |
| SignalP_EUK | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 19 | 19 | - | – | |
| Phobius | 3 | 14 | 12 | - | – | |
| PANTHER | 4 | 207 | 204 | 1.9E-95 | – | |
| PANTHER | 4 | 207 | 204 | 1.9E-95 | – | |
| Phobius | 15 | 19 | 5 | - | – | |
| Gene3D | 18 | 208 | 191 | 6.5E-61 | ||
| Phobius | 20 | 208 | 189 | - | – | |
| SUPERFAMILY | 47 | 205 | 159 | 4.56E-34 | ||
| SMART | 54 | 198 | 145 | 9.9E-41 | ||
| Pfam | 57 | 197 | 141 | 6.5E-33 | ||
| ProSitePatterns | 96 | 109 | 14 | - | ||
| PRINTS | 101 | 121 | 21 | 2.6E-23 | ||
| PRINTS | 130 | 150 | 21 | 2.6E-23 | ||
| PRINTS | 163 | 178 | 16 | 2.6E-23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Manganese ion binding | Interacting selectively and non-covalently with manganese (Mn) ions. | ||
| Molecular function | Nutrient reservoir activity | Functions in the storage of nutritious substrates. |
Expression pattern of LotjaGi3g1v0414800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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