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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0414900 |
| Transcript ID | LotjaGi3g1v0414900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Germin-like family protein; TAIR: AT1G72610.1 germin-like protein 1; Swiss-Prot: sp|Q9ZRA4|AB19A_PRUPE Auxin-binding protein ABP19a; TrEMBL-Plants: tr|I3SM12|I3SM12_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0414900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:82011552..82017494) extracted from Lotus japonicus Gifu genome v1.2.
CCTGTTCCCACATTCTCTTCACACATGCACCAATAAACATTCTAAACAAGATGATTCGCCATGTTCTTTTGTTCTTAGCT TTTCTCTCATCATCCACTTCACTTGCTAATTCTATCACAGACTTGTGCGTAGCAGACCTAAAGGGAGCATTAAACCCTGC AGGCTATCCATGCAAGAAGCCGCCACTAACAGTGAACGACTTGGTGTTTTCTAACTTCAAAGCTGGAAACACCTCAAACA TTCTCAAAGCTTCACCAACCCCGGCGTTTGTCGCGCAATTCCCAGCCGTGAACGGGCTGGGACTCTCTGCGGCGCGGGTA GATTTAGATGCCGGCGGTGTGGTCCCGATGCACTCTCACCCGGGCGCTACCGAGATGGTGATAATGGTGCGAGGCCGCAT CACAACCGGGTTCATTGCTGCAGACAACTCTGTTTTTGTGAAGACGCTGAAGGAGGGTGATATCATGGTTATCCCACCAG GGTTGTTGCATTTTCAGGTGAATGCTGGTGGGAAGAAAGCCACTTGTTTTGTCACTTACAGTAGCCCAAATCCTGAGCCG CAGATCCTTTATAATGCGTTGTTTGGTAGCAGCTTAGATTCTGATTTGGTGGCAAGAACTACCTTCCTTGATCTTGCACA AGTTAAAAAGCTTAAGGTTAAATTTGGGGGAAGTGGCTAGCTAGATAGGTTTGCAAATTAGTTGTTATTTTATCTGATCC GAACCATATATGTTCTTAGTTGTGTTCTATGGTTAGGTGTTGTATAATTTGCTTGCTCTTCCAATTCTAGCTAGTAATAT CACTCTACCTGTAATGAATAAAACTCATGAAATAGTAAGATCCAAGTGTCTTGCTTAGTTAGGCACAAATACAATACTAC GTATACATCTGTTACAAAATTATTATTGTTGTTTAAGGTTATTCACAAAGTTAATAGTTCATTGATTAATGTTATAATTT GATTTAAACACTCTTACTTAATGTGAGTTACATAGAAGAGAGAAAATGATAATTATTAATCAACTAATTTGTGAAAATTA TGACAGGTGAAAATATAAAGTGAAGTTTAGAGATGAAATATTAAATGAGGGCATGAATAAAAGAAAATGAAATAAAAATC TTTGAATTTATAAAAACGACAATAGTTTTGAAAAAAGACATAAAAACTAATTATACAACAATAACATTCGAAGGAGATAG TAGTTTACAAGCGGCAGGTAGCACTCCCATTAAACTTAAGATATTTTGGGCTAGGCTTCACCTCACCCTCGTTGACCTAT TTCAACATTTTGGGCCCAACACACTAAGATCTTATTAATGTGAGTAAACTGTTTGTATTTGTGTTTCATTTTTCCATCAG TAATGATATATACACACCTCATTTTTTAAACACTCTATTTACACCTTTTTTTTATTTATATCTCTCTCCTCTTATCATCT ATCACATCTCATACTTTCTCTCTCTTACTTTTTCTTTTCTTCCTATCTCTCTCTTCCTTCCACCTCTTTCCACCTCTCAA AGAGGTGTGTACATAACATTATTCTTTTTCCATTTCTTACTTATAGCTAGATCATTTCTGTTTCATTAATGTAAGTCCTT TTGGCGGTTGCATAACCCCTGCCGATTTTAGCGTCGTTAATCATTTTTACGGCAGTTTTTTGTTAACTGTCGAAATGATC AATAAATAATAATTTTATTAATGGTTTAAAAATTTTGATTTTCGTCCCTCAATTAATGAGTGACAGTGCCACATAAGCAT GTTGGTGACACATAAGCACGGTGGCCGGAGACAGATAAGCAGCAAGGATGGATTCCACATATTTCTTGTAGTCTAAGGAC ATTTTCCAGAAAATTTTTCGACGAGGGACGATTTTCGAATCTCGCTCAAAATTCAGGGACGATTTACTGATTTAACCCTT CATTAATATGTACAAAAGTTAGTCACTGAATCTATGTCCCACATATCTAGTAGGACTGTCCGAGACACACTGACTCAAAG TAAAATTGTGCAATTTGCCAGTTTTTTCATCACTTGGGTCGGGTTTGATCGCAGGTCTTGTCGATTCAAAGGAGTAGTTT GGTTAGGGTCGGTGCGGTCAATATTGATTTGATCGAGCTCCAGCCTGATCGAACAGCCGTAGTAACTATATTAAAAAAAT CAGCACAGGCCAATCATAAGCAAACCCAATCGCTTATAAAAAAACAGTCTTTTAAACACTCTTCTCACTAACACTGGCGC CACACACCAGTGTCACACACATTTTAAAAGGTAAATTTTTGAAATGAAAAACTTAAAGCATTGTTTAGGTAGCCACAAGA GGTGCGAACCTCCAAGACACTTTGATGTTTAAGCCAGCAAAGTTGAGAAAATAAAAATTAGAGTTAAACAAATAGAGTGT CACTAACTAGTGACGTTCCCTTCACGTGTGTGCATATACATACGGTCGTTGACAAACCTAAGAGAAATCATGCGCTTATA TGATATGATTTTGTAACAGATATTTACTTAAATACTGGAGATATTACTTTAGTCGGAAACCCTTATTTCATGTGCATAAG ACCTAGTCAATATTGAGTCAAAGTACTAAAGGAGGCGCGAGTTATGGTGTAGGAAATTGCCGAGTAACGAAAGTAAACGA ATAGCTCTCGTTTTGTCATAATAGTCAACACAAACATAATTTTATGTATTTTTAAGGTAGAATGGAGAATCTAAAACTAA TCATATAGAATTTAACATAGATTGAAAAAGCAGAATTTTAACACATTGACTTCAATATAGAACCATACATGCATGTTATG TTTGATTGGGTGAGCTCATTTTTTAAACTTTTTTTTTTAAATGAAGCATGAGTTCCGCCAAATGACCAGTTATATTCAAA AGATCGACTATAAGAATTTATGAGTTTAATGGTTGTGCATTGTCAGTATAAAATATTTTTGCACAGACGTCAAATAATTG AATGTCACGTATTCATAAGCATTAATGTTCCTTTTCATTTTAATTAAATTTAAAGGTTATTTTCTTATTCAGCAACTCAT CAAATTTTCACCTACGAACCCGAACCAACCCAATCCGACAATCTTTGGGTTGGTTTGGATGGATTGATCGATTGGATCGC TATATTAAAATAAAAATAAATATGGAATATTGAAAAATATTAAAAAAATATAAGTACTTCAAGTCTCTAAGTGCAATTAC ATCATAAATTCATAACTCCCGTCTACACACATCTATACAACAACACGTACTTAAACAAGTATTCTAAGTCTTTAAATATT ACAAGTAATTACAAATAAATTAGTCTCCAAAACTCTTAAAAATCACTCTAGTAGCAGGACTCCAAGTCTTCATAAATCAC ATACTCTACTAGTAGGTTAGGTAAAAATTAAATTATTAAAAATATATATATTAAATAATACATTATTATTATATAATTGG ATTTTGGGTTGGGTTGGATGAATTATTATGAAATCCGATATCCGATCCAAAGATCATTGGATTGTATTAAAATCCATCTG ATAACTCGTTTGTCAATCCAACCCGCATTTTTACCATTGGATCGGATTGGGTTTGATGGTTTCATTGGTTTGACCCGGCA CATATGCACTTCTAAAAGAATGTTTACACTGTACAATGCATTACCATTTTATTTCAATATAATTCATTTGACTTATAAAA AAATCATTAAATTCATAATTTATTTTGTTTAGAAGGAGTGACATGAACCCGGTTACAGTCAAGTCAAGCTTATTAAAAAG AAAGTTACAGTCAAGTCAACGACTCGAAGCCGTAGAGCTAGTATTTTTTCCCTGTATTAATTTTGGTTCCGATCTCAATG TCTGCGTTTACCCCCTTTTTGAGCCTATTTTTAGGGGGCTTCGGATCTATCAAGTACTACAATTGATTGTCCAAAAAAAT ACTATAATTGGAGTTCAGTTTTAACTAGCGTTTCAAATTTTGCGAAAACAAAATCAAGTTTCTTACTAATTATGCCTACT TGGTTGTTTGAGGCTTTTTTATATATCAATCAAGTGTATAGCAAACGTATTTCTTGGATGAATTATTTTAAATGGGATTC ACAGAGTAATACACGAGAGTATCACCTTTATGAGTGATTTAGACAATATATGTAGTAATTAGATTAATTAGGAGTGATCC AACAACTTTTTAGCGATTACTCAACTTGAATAACAACTCTTTTATATCTGGTGGGTGACTTCCCTTCTTAGCGAGTAACT TCTTTACTTGACAAACAACTTCCATATTGATGACATCTTTTTTATGTGGATAATCTCATGCGCACTATCTATATATATTT ACGACTTCTTTAGCGGTTCAAGTATTATTTCCCGATTTAAGATGACCCCTGCCCATCCCTTTTTAACCCGATTATATTTG TATATACTATTTTACACGTAACTCCAAATTCATATATTTAGGGTTAGTTATCTAAATAACTTGATGTAATGGTGGGTCAG ATTCACTTGAATACCAAATATGGCGCTTAGGCTCTAAAAGCTCTTACTTTACTTCTGATAGGATTTTAATTAGCTTAGTC TCTATCACCGTTCACTTAACGTGAACATGCCAGGCCACTCCATTTCTGAGATTTAATTTCTAACATCTCTTTTGAATTCA CTAATACACTCTAGATTGACGCATGGTGACACACTTTGAAGATGTACGTAGAATCACTATACCGTGCCTCACACTTTGTG TCCAAGTTTTAATGCCAGATCAGAGCCATGTTCTTCTCCTCGCATCTCATTTAATAAACGTTGACCCACCAGTCAAAAAA TTGACTCGAGTTAACGTTCCATCGAAGCACATGCATGTGTACATGCACCATGCACGCTCCACCTTATCTTCAGCCTCAAT CTTTGTCAAGAACACTACATCAACAATGCCTTATAAAACACCTACCCAATCCCACATTCTCTTCACACACCAATCAACAT TCATTCACTGAACAACAAGATGATTCGCATCAATATTCTTCTGCTCATCTTAGCAGCTTTCCTCTCATCATCCAATACCC ACGCCTTGGTCTCAGACTTCTGTGTAGCAGATCTAAGCCGCTCAGTGAGCCCTGCAGGCTACGCCTGCAAGAAACCGCCA CTAACCGTAAATGACTTCGTCTTCTCAAATTTCAAAGCTGGAAACACCTCCAACTTTCTCAACGCCGCACTAAACCCCGC CTTCGTCGACCAATTCCCAGGCATCAATGGGCTCGGACTCTCCGCAGCGCGGCTAGACTTAGACGCCGGCGGTGTGGTCC CCATTCACTCTCACCCAGGGGCCTCTGAGCTTGTCATAATTCTGCAAGGTCGCATCACTGTTGGGTTTATATCAACAGAT AACACCGTTTATCAGAAGACGCTAATGAAGGGTGATATCATTGTTATCCCGCAAGGGTTGTTGCATTTTCAGCTGAATGC TGGTGGGAACAGAGCCTCTGCTGTTCTCACTTTCAGTAGCACGAATCCTGTAGCGCAGCTGGTTGATGTTGCTTTGTTTG GCAACAACTTGGATTCTGGTTTGGTGGCGAGGACTACCTTCCTTGATCTTGCTCAAGTGAAGAAGCTTAAGGCTGTTTTT GGAGGGCGTGGCTAGTTTTGGGTTTGCTAATTATGGATTGTTGTTGTTGCTGCTTAATCCAAACTGTGTTCTTAGTTGTG TATTGTTTGTTTAGTCATTGAATTTCAGTAATCACTGCCCGTAATATTTAATAAAGTGTTTGTGTTTTGTTTTTCCATCT CTCAGTTCCAAGTCCCAAATTAATGACAGCTTTAGCACCATGCTTGATTTTTTTAATTTTTTAAATGCTTAGTTGCACGA TTGTGTGATTTTGGTCTGCAATTTTAAAAACAAGCTATTTTAAACTTTTTGGTTACGCGATGGTGTGATTTTCGTCATTC CGTCAATTTTGCCTAGTCAGCCG
CDS sequence (LotjaGi3g1v0414900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTCGCCATGTTCTTTTGTTCTTAGCTTTTCTCTCATCATCCACTTCACTTGCTAATTCTATCACAGACTTGTGCGT AGCAGACCTAAAGGGAGCATTAAACCCTGCAGGCTATCCATGCAAGAAGCCGCCACTAACAGTGAACGACTTGGTGTTTT CTAACTTCAAAGCTGGAAACACCTCAAACATTCTCAAAGCTTCACCAACCCCGGCGTTTGTCGCGCAATTCCCAGCCGTG AACGGGCTGGGACTCTCTGCGGCGCGGGTAGATTTAGATGCCGGCGGTGTGGTCCCGATGCACTCTCACCCGGGCGCTAC CGAGATGGTGATAATGGTGCGAGGCCGCATCACAACCGGGTTCATTGCTGCAGACAACTCTGTTTTTGTGAAGACGCTGA AGGAGGGTGATATCATGGTTATCCCACCAGGGTTGTTGCATTTTCAGCTGAATGCTGGTGGGAACAGAGCCTCTGCTGTT CTCACTTTCAGTAGCACGAATCCTGTAGCGCAGCTGGTTGATGTTGCTTTGTTTGGCAACAACTTGGATTCTGGTTTGGT GGCGAGGACTACCTTCCTTGATCTTGCTCAAGTGAAGAAGCTTAAGGCTGTTTTTGGAGGGCGTGGCTAG
Protein sequence (LotjaGi3g1v0414900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIRHVLLFLAFLSSSTSLANSITDLCVADLKGALNPAGYPCKKPPLTVNDLVFSNFKAGNTSNILKASPTPAFVAQFPAV NGLGLSAARVDLDAGGVVPMHSHPGATEMVIMVRGRITTGFIAADNSVFVKTLKEGDIMVIPPGLLHFQLNAGGNRASAV LTFSSTNPVAQLVDVALFGNNLDSGLVARTTFLDLAQVKKLKAVFGGRG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 19 | 19 | - | – | |
| SignalP_EUK | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 19 | 19 | - | – | |
| Phobius | 5 | 12 | 8 | - | – | |
| PANTHER | 8 | 208 | 201 | 1.1E-83 | – | |
| PANTHER | 8 | 208 | 201 | 1.1E-83 | – | |
| Phobius | 13 | 19 | 7 | - | – | |
| Gene3D | 19 | 208 | 190 | 3.1E-57 | ||
| Phobius | 20 | 209 | 190 | - | – | |
| SUPERFAMILY | 21 | 202 | 182 | 1.9E-33 | ||
| Pfam | 56 | 198 | 143 | 3.1E-28 | ||
| SMART | 62 | 199 | 138 | 2.0E-34 | ||
| ProSitePatterns | 96 | 109 | 14 | - | ||
| PRINTS | 101 | 121 | 21 | 1.2E-19 | ||
| PRINTS | 131 | 151 | 21 | 1.2E-19 | ||
| PRINTS | 164 | 179 | 16 | 1.2E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Manganese ion binding | Interacting selectively and non-covalently with manganese (Mn) ions. | ||
| Molecular function | Nutrient reservoir activity | Functions in the storage of nutritious substrates. |
Expression pattern of LotjaGi3g1v0414900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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