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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0415000 |
| Transcript ID | LotjaGi3g1v0415000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Germin-like protein; TAIR: AT1G72610.1 germin-like protein 1; Swiss-Prot: sp|Q9ZRA4|AB19A_PRUPE Auxin-binding protein ABP19a; TrEMBL-Plants: tr|I3SQD4|I3SQD4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0415000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:82020403..82021969) extracted from Lotus japonicus Gifu genome v1.2.
TTTGTCATTATTCAATGCGCGGGGGACCTATCTCTAGCTCCAACATGTAAGAAAGCTCCTATATATAACAGCACTATGCA CTCTTAACTCTCACATTCCAATTCAAACCAAATTCACACACACCACACCAAGATGCTTCCTCACATTGTTTTCCTCTTTT CCCTTCTCCTATCCACTTCCCATGCCGCTGTCCAAGACTTCTGTGTAGCAGACCTCAAGGGCTCAGATGGCCCTGCAGGC TACCCCTGCAAGACCCCTGCTACTGTAACCTCAGATGACTTTGTGTTTGCTGGCTTATCTGCACCAGGAAACATCACAAA CATAATTGGTGCTGCTGTTACCCCTGCATTTGTTGGTCAATTCCCAGGTGTCAATGGGCTTGGACTTTCAGCAGCAAGGT TGGACATTGGCCCTGGTGGTGTTATCCCACTCCACACCCACCCTGGTGCCAATGAGCTTCTAATAGTGACCCAGGGTCAC ATCACTGCTGGATTCATTTCATCAGCTAGCACTGTTTACATCAAGACACTGAAAAAGGGGGAACTTATGGTTTTCCCACA AGGGTTGTTGCATTTTCAAGTAGCTGCTGGTAAGACAAAAGCTATTGGTTTTGCTATTTTCAGTAGCGCAAGCCCTGGCC TTCAAATCCTTGATTTTGCATTGTTTGCCAGCAACTTCTCTACTCCTTTGATCACAAAGACTACTTTCCTTGACCCTGCC CTGGTGAAGAAGCTTAAGGGTGTTCTTGGTGGCAGTGGCTAAGCCTTGTTCTTTTATGAGTTGTTATCTTTACTGATTCC ATTCTTGTGTTGCTTCAATTCATTAGATTTTGTCTAGGTTTCCTAGTCATTGCAATAATGCATTCCTTGTGTCTATGTGA TGTCATAAATTTCAGTGTTTGGTTTTATTTTGTTGATTTCTCTAAATGTTAAGGGTTTAATTTGTCAATGTTGCATGAGA ATCTCATTCCATTTTCCGTATTGATGCATAGTTTGCATGTCAACACAACGTTGAGCTAGAGTTTTGATAGATCTGCACTT TAATTTCTCATCCATCTTATTTTCACATATTTTTCTTCATATTTATTTTAGTTTCCTATTACATTAGATATCATTTCACT AATTGCTCTCATTTTTTCCCGCTATCTCAGATTAAAGTGGGAGTGAACTTGATTTGTGAAGACAAACTTTTCCTTTATTT TTTTGCTAGCTATTTCTTTTTTAAAAGGTGTTAGTTGTCTTCTTCAATTTAACTTGTCTATTTTAGAGTAATGGCCGGTG GACATACAATTGGGGTTAGACAGTGCTTCAAATAAGAAGAGGGGAAAAAAAGACAAGTGATGAATGGGAAATACGATGTA AATGTGAAAAAATAAAATATTAAATATCCTAATATATATTTAAATGAATTTTCTGTGTAATATAGATATTAATTAAATTA AATTAAAATAATTGGGCAATCATTGGCGCTAAATGTTTGGAATAATTTTGTAAGTGTAAAATTATTTCATAAAGCTTTAT GTGCTATTCTTCAGGTTGCACCATTTTTTACTAAATCAAAATGTAAC
CDS sequence (LotjaGi3g1v0415000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTCCTCACATTGTTTTCCTCTTTTCCCTTCTCCTATCCACTTCCCATGCCGCTGTCCAAGACTTCTGTGTAGCAGA CCTCAAGGGCTCAGATGGCCCTGCAGGCTACCCCTGCAAGACCCCTGCTACTGTAACCTCAGATGACTTTGTGTTTGCTG GCTTATCTGCACCAGGAAACATCACAAACATAATTGGTGCTGCTGTTACCCCTGCATTTGTTGGTCAATTCCCAGGTGTC AATGGGCTTGGACTTTCAGCAGCAAGGTTGGACATTGGCCCTGGTGGTGTTATCCCACTCCACACCCACCCTGGTGCCAA TGAGCTTCTAATAGTGACCCAGGGTCACATCACTGCTGGATTCATTTCATCAGCTAGCACTGTTTACATCAAGACACTGA AAAAGGGGGAACTTATGGTTTTCCCACAAGGGTTGTTGCATTTTCAAGTAGCTGCTGGTAAGACAAAAGCTATTGGTTTT GCTATTTTCAGTAGCGCAAGCCCTGGCCTTCAAATCCTTGATTTTGCATTGTTTGCCAGCAACTTCTCTACTCCTTTGAT CACAAAGACTACTTTCCTTGACCCTGCCCTGGTGAAGAAGCTTAAGGGTGTTCTTGGTGGCAGTGGCTAA
Protein sequence (LotjaGi3g1v0415000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLPHIVFLFSLLLSTSHAAVQDFCVADLKGSDGPAGYPCKTPATVTSDDFVFAGLSAPGNITNIIGAAVTPAFVGQFPGV NGLGLSAARLDIGPGGVIPLHTHPGANELLIVTQGHITAGFISSASTVYIKTLKKGELMVFPQGLLHFQVAAGKTKAIGF AIFSSASPGLQILDFALFASNFSTPLITKTTFLDPALVKKLKGVLGGSG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 18 | 18 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 18 | 18 | - | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 18 | 18 | - | – | |
| SignalP_EUK | 1 | 18 | 18 | - | – | |
| PANTHER | 4 | 209 | 206 | 8.4E-105 | – | |
| PANTHER | 4 | 209 | 206 | 8.4E-105 | – | |
| Phobius | 5 | 13 | 9 | - | – | |
| Phobius | 14 | 18 | 5 | - | – | |
| Gene3D | 17 | 208 | 192 | 1.0E-64 | ||
| SUPERFAMILY | 18 | 202 | 185 | 1.23E-36 | ||
| Phobius | 19 | 209 | 191 | - | – | |
| SMART | 53 | 199 | 147 | 1.7E-37 | ||
| Pfam | 54 | 195 | 142 | 1.7E-31 | ||
| ProSitePatterns | 96 | 109 | 14 | - | ||
| PRINTS | 101 | 121 | 21 | 4.3E-22 | ||
| PRINTS | 131 | 151 | 21 | 4.3E-22 | ||
| PRINTS | 164 | 179 | 16 | 4.3E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Manganese ion binding | Interacting selectively and non-covalently with manganese (Mn) ions. | ||
| Molecular function | Nutrient reservoir activity | Functions in the storage of nutritious substrates. |
Expression pattern of LotjaGi3g1v0415000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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