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LotjaGi3g1v0417100.1

Overview

Field Value
Gene ID LotjaGi3g1v0417100
Transcript ID LotjaGi3g1v0417100.1
Lotus japonicus genome version Gifu v1.2
Description Asparagine--tRNA ligase; TAIR: AT5G56680.1 Class II aminoacyl-tRNA and biotin synthetases superfamily protein; Swiss-Prot: sp|Q9SW96|SYNC1_ARATH Asparagine--tRNA ligase, cytoplasmic 1; TrEMBL-Plants: tr|I1K622|I1K622_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0417100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:82364758..82367788) extracted from Lotus japonicus Gifu genome v1.2.

GTAACTGATCACCGCCGGCGCCAACAATGGCAGACCAATCTTCACCGCCGACGGCCCAATTATCCGCCGCCACCATCACC TCAGTTCCCAATCCGATCCATAATCTCCCGCAGCGACGGCGGGTCCGGCCTAGCGGGGCAGAAAGCGAGGGTCGGCGGGT GGGTGAAGACGGGAAGGAAGGCCGATAAGGACGCCTTCGCTTTCTTGGAACTCAACGACGGGTCCTGCCCCGGCAACCTG CAGGTGATTGTGGAGGCTTCGTTGGCGGAGTTAGGGCACATTGTTCCCACCGGAACTTGTGTTGTCGTCGATGGCCATCT CAAGCTTCCTCCGTCTGGGACTAAGCAGAAGGTTGAGCTTCGCGCTGATAAGGTTCTTCATGTGGGTACTGTTGATCCTG CCAAGTATCCTTTGCCCAAAAGCAGACTCACTCTTGAGTTCTTGAGAGATTTCGTTCACCTTCGTTCCAGAACCAATACT GTAATCTTTCTTTCACCCTTTTGCTTCATTTTCTATCAGTTGATGGTGCCATTTAAAATTTTGAATATAGTTCTAGCAAT TTGCATGAGTATTAGCAATTTTGTGCAATGTGCATTTGCATGAGTATTAGCAATTTTGTTGTTGTATAAATTGGATTTGT TTTATGAAAATTGATTTTAGTTAGAATGAGTTTGAAGTGAAGTGATTTTAGCAGGCTTGTTAATAGCGCGCCATAGCGGC GCAATAGCACTATTTGCCGCGCGCTTGAAATAACGTTTTTTGGGCTTGCCGCTATGCTACGCTACCCGCCATTAACAACC CTGGATTTTAGTACAAAAACTACATTTTTTTTGAAAAATCAAATTTGGTTAAAACCAAGCAGTCATGCTAGTAGATTGGT ATTTTTGATAGTTATTAGGGTTGTGTTTGTATTTTTGTTCTAATGAACTGATTAGTGATTGCATTTTATGTTTTGCAAAT TTAGAAATGGTTTGTGTTTTTGAAGCTAGTAAGTTTGATTAGATGATTGTTGGGTTTGACTGTAGATCTCTGCAGTTGCT CGAATTCGGAATGCTCTTGCTTATGCGACGCATACATTTTTCAATAAGCATGGGTTTCTTTATGTGCACACGCCAATTAT CACGACGAGTGATTGTGAGGGTGCCGGTGAAATGTTTCAAGTGACAACCTTGCTCAGTGAAGCTGAGAGGCTGGAGAAGG AACTAATACATAATCCACCTCCGACGGAAGCTGATGTAGAAGCTGCTAGGCTTATTGTTCAGGAGAAAGGGGGGATTGTT TCCCAGCTGAAATCTGCTAAAGCAAGAAAGCAGGAAATTAGTGCTTCTGTGGATGATCTTAAGAAGGCGAAGGAGAGTCT CTCTAAGGTGGAGGAGAGATCTAAACTTAAGCCGGGTATACCTCAAAAGGATGGAAAGGTGGACTATACTAGAGATTTCT TTGCCCGTCAAGCATTTCTAACTGTTTCAGGCCAGCTTCAGGTTGAGTCTTATGCATGTGCTCTCAGTAGTGTGTATACA TTTGGGCCAACATTTCGCGCGGAGAACTCTCACACGACAAGGCATTTGGCAGAATTTTGGATGGTAGAACCTGAAATTGC GTTTGCAGACTTAGAGGTATACAAAACTTGATCCCACTCTCAAGATTATTATGGTTATCTTAAGTGGCTATTATTTTTAG TTTAAGGAAATATACTGTTGTTTTCTTTCATCTCTCAGGAATGTATTAGTCATCATCAGACATATACTTATCAGCCGAAT GTCAATTCAAATATTTGATGTTTAGTGCAATGTTGAACTGCCCACTTATCCCTTACTTCTTTGGTGCTTTTGCATTAGGA CGATATGAACTGCGCCGAGGCATATGTGAAGTTTTTGTGTCAGTGGTTACTTGACAGCTGTCTTGAAGATATGGAGTTTA TGGCAGACAAGTTTGATAAAAGCTGCATTGATCGTTTGAAAATGGTGGCTTCCACCCCCTTTATTCGAATTTCATATACA GAAGCAGTGGAAGTACTAGTGGAAGCTGTCAAGAATGGCAAGAAATTTGAGAATGAAGTAAAATGGGGGATCGACTTAGC ATCTGAGCATGAAAGGTACTTCTAAATTTGTTTTTGCAAATTCTTGTTCTTATTGAATTGTATTGTGTGATAACTTCAGG GTGTGATTTTATGCAGATACCTAACAGAGGTAAAATTCCAGAAACCTGTGATTGTCTATAACTATCCAAAAGATATCAAA GCATTCTACATGCGCCTCAATGACGATTCAAAGACTGTGGCTGCTATGGATGTGCTTGTCCCCAAGGTATGTATCCAACA TATTTTGTTTTGAACATGTTCATGGTTCCTGGGAGAAGACCTATAGAATCCTAGTAAGGAGAGAATATTCAATAGTTGAA GGTAGAAGAGCCAAGAAAAATTGGTTATCAAACCATTAAGAAGGATTTAGATTTAAATATTTGTCATGAACCATAATTTA CAATAGGACATTATGATATTTCTAACTCCACCGAATGAGAATAGACTGTCTTGTTGTTATTGTAAGCTTAGGGTACCTTG CTACTGATCAGATATATCTTAATACCTTGTGACTTTTTGGGTTTTAATAATAGAGAAACATGTAAATGTAATTTCAGGTT GGAGAGTTAATCGGTGGAAGCCAAAGGGAAGAGCGGTATGATGTCATTGTGAAAAGGTGAATTCAAATTTACCCTATAAA TCCATAACACATAAATGTGGTCTCTTTACTTTATCTTTGCTTACTTTGTTTCCTTTTGCAAGGATTTTGAACTCATTGGA TGATTGTTCACTTTATTTTTCTTATTTGTATTGATTTTATATTGCAGAATAAGCGAGATGGGACTGCCTCTGGAGCCATA TGAGTGGTACCTTGATCTGAGGCGGTATGGAACAGTCAAACATGCTGGATTTGGTCTTGGCTTTGAAAGGATGATTCTTT TTGCCACTGGTCTGGAAAATATTAGAGATGTGATTCCCTTCTCACGATATCCTGGCAGGGCAGATCTATGA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0417100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAAGGTACTTCTAAATTTGGTGTGATTTTATGCAGATACCTAACAGAGGTAAAATTCCAGAAACCTGTGATTGTCTA TAACTATCCAAAAGATATCAAAGCATTCTACATGCGCCTCAATGACGATTCAAAGACTGTGGCTGCTATGGATGTGCTTG TCCCCAAGGTTGGAGAGTTAATCGGTGGAAGCCAAAGGGAAGAGCGGTATGATGTCATTGTGAAAAGAATAAGCGAGATG GGACTGCCTCTGGAGCCATATGAGTGGTACCTTGATCTGAGGCGGTATGGAACAGTCAAACATGCTGGATTTGGTCTTGG CTTTGAAAGGATGATTCTTTTTGCCACTGGTCTGGAAAATATTAGAGATGTGATTCCCTTCTCACGATATCCTGGCAGGG CAGATCTATGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0417100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKGTSKFGVILCRYLTEVKFQKPVIVYNYPKDIKAFYMRLNDDSKTVAAMDVLVPKVGELIGGSQREERYDVIVKRISEM GLPLEPYEWYLDLRRYGTVKHAGFGLGFERMILFATGLENIRDVIPFSRYPGRADL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS50862
1 126 126 8.754
IPR006195
Gene3D
G3DSA:3.30.930.10
4 135 132 3.0E-43 –
SUPERFAMILY
SSF55681
11 131 121 1.46E-39 –
PANTHER
PTHR22594:SF34
13 136 124 1.8E-65 –
PANTHER
PTHR22594
13 136 124 1.8E-65 –
Pfam
PF00152
13 129 117 9.5E-34
IPR004364
PRINTS
PR01042
51 67 17 9.1E-7
IPR002312
PRINTS
PR01042
91 105 15 9.1E-7
IPR002312

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000166
Molecular function Nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
Subterm of
GO:0004812
Molecular function Aminoacyl-tRNA ligase activity Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006418
Biological process TRNA aminoacylation for protein translation The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis.
Subterm of
Part of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0417100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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