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LotjaGi3g1v0417600.2

Overview

Field Value
Gene ID LotjaGi3g1v0417600
Transcript ID LotjaGi3g1v0417600.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Nuclear transcription factor Y subunit; TAIR: AT1G72830.1 nuclear factor Y, subunit A3; Swiss-Prot: sp|Q93ZH2|NFYA3_ARATH Nuclear transcription factor Y subunit A-3; TrEMBL-Plants: tr|A0A151T9E0|A0A151T9E0_CAJCA Nuclear transcription factor Y subunit A-3; Found in the gene: LotjaGi3g1v0417600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:82424435..82429083) extracted from Lotus japonicus Gifu genome v1.2.

GTGGAGTGTCTTGAAGTGGGTAGAGAGAGAATGAGCTTAACTTGATTGACATGTGTTAATGCGACAGAGAGAGAGAGAGA GAGAGAGCAAACATCCCTTCAAGCTGCTGGACTTAAAAGAGACCAAACATGAGTGAAACACTATAAAGACAAGATAGTAC TGCAGGGTAGTGGACAGTGGTGGTAGCTATGATTCTTGTTTAAGAGTTCACACATACATACATGCAGATTCTGGTAAGTA GCAAAATCCCATTTCTGATTCCTCTTCACTTTACGGAATTTCCGAGGTTTCTCTCTTTTGAACTCCTTTTGCCTTGTTTT GGTCTATATTCATTCATTCCCCTTTTTTCTGTATTATTTTTCTTATGGTAAAGTTTCTTTATTTTTCTAACTTGGAGTTT TGATGGGATGGTAGTGAATCAATAATAAGGTTGCTGATCTTTGATAGTGGGATTCTTGTTATGGCTAATGAGACACACTT CTATTTAGAGATGGCCTATGGTTTTGTTCTTGTTTCTGTGAATATTCTGGGGAATTAACCATTTTTGGAAAAGCTTTTCA ATTTTGTCATGTCTTGCATGATATTATAAGCTGAAACTTGAAAAGGAGGAATTTCTTTTCATTTAATCCCTCTTTCTTAT CTTTCAGTTCACATGCATTCTATCTCTATTCTTTTGTGTTGGTTCAATCCTGTCTTCTGCTTGATTGTTTTCTTAAGGTT GTCAGTCTGTGAATGATCCTAAACTCTGATGTTTTTCACATTAATTTATTAACACCCTATTCATTGGAATGCCTTTGTTG TTGCTTCTTGCTTTTTGATGGCCTACTGCGTGCATGTTTAGAAACTCATCTATAATTGATTCTAAAGCCAAATCAATTCT AGAGAGCTTCTTTTTGGGTCTTTTGACTGATATGTCCTTCCTAGTTTGGGAAATTGTGGCAGTCCCTCCTAATAGAGACT AACCCTTGCTTTTAACTGTCGTAATATGAGAAGCTATTCAAGCATGCTATATTGTTTAGATGAAGGATGCATGTGACTTT CTTCTATAAGGCAATTCAATTGTCATAGAGTGCACAGCATAAGTGGATTCAAAATTTGAAACATTAACTAGTGGTTTATA CTTTTTTTGAACCTCTGTTCCAAGGCCTTACATGTATCTAATTGGAGCATCTACATACTCTATTAATCTATTTCATGTTG TCTGATATCTTTCATTTCAAGACAGTTACAAGATGATAATGTTTTCAACTTTTCTGTCAAATAAAACTCTTCCCCAATTC ACAAGCATGGATTTGTTTTCTGTATACATATGCCAAAAACTCATATCCAAGGATGTATGCCAATTGGCCATACTCAATAA CTATTTATAAACTAGTAGCTACTGAACTTGTTTGTCTTTTCGTAAGTGCATGTAAAGATTAACATGTTCATTTATAGTTT GGTATGCTCATCTCATTCCAAATTTCTAAGTTCTTGCAATTGGTTTGCATAGTTTGGTTGCTAAATGCTAAGTAACTGCA ACAGCAATCTGATAGGTATATACTACTTTGGGAAACTATTGATTGGGAAAGCTGTAGCTAAATCCTGGTTTCCCATCATA GTTTTTTTTATTCTCATTATTTTGTGGTAATTGAATTGCTACTCTGATAGGCTCTCTGGCCCCATATTCTACCCATTTAA CATCTCCTTGTGTTCTTGGATTCTCATCATGGGGTACTTTTTCTGAATCTGGTGTGCAACAATCGTCCATGTCCACTAGT TATACCATGAAGATGAGTTCTTTACCACAACAATGTCACCAGACTAAGCCACTGAGTTTGAAATTTCAAGACCAAGATTC TTGTTCAACTCAATCAACAGGGCAATCTTATCCGAAAGTTGGTTCAGCACAATCAGGTATTGCTATTGAAATCCTGTCTA TATCTGTATTTCTGACTCTGCTTATCAATTGCATGTTATTAATTTTATCTGTTTTAGGCATATCTATTCTATTGTGAAGC TTCAGGTGTAGTACTATGTATGGTAAAAGAATAGAAATGAAGTATATGCAATTTCTGATTATTCTGCAATTCTTAATAAA ATCTCCTCAGTTACCATTGACAATGGTAGAAAAAATTATAATAAGCTATTCTTTCAAAAGTTGAAATTGATCTTAGATTG CTTAACTAGTGTCAGAAAATGTTTTGTTACTTCCTAATGGGTATTGATGAGTATTTTGCTCTAGGTCAAATTTCTGTTCA GTATAGCAATTCTTCTGATTGTTCAACAGTAAGCAAAACTGGGGAAGAGAGTGTGGAAGGTTTCATCAGGTCATCTGCAG TGACTCGGGATTTTACCTTCCCTCCTTCACAATTGAGCTACAACCAATCACTTGTAAGTATATATGTGCTTGTTTCTTAG TGGACAGAAGATAATTTGCTCATCTCTTACCGAAAATTTACTGTTCAGGCGAATATTGCTTTCCACCATGCTGAGCCATG CTTCAGTGGCCTACTAGCTGCTCCATATGGGCCACAGCCTAATGTAAGATATTCATTCATTTATTTTCCATTTTTGTCTA TGAGCCCATGTGGACGCGGACCTAAGTGTTCCGTGGTCTGTACCCAAACAAGCTCTATTTCTCTCAGTTTGTCTCCAGCC TTAACCGTAAAATAAAATGTTAAAATTCTTGTTTGACAGAGTTATGGCATCAGATTTATGTTTTATCTGGAGTATTCTGT TTATAACTGATGTATGAGATAATCACTTTATGCTTGCTCCTCCTTCTACCTTCAAAGTTTGGTACAATGCTGTGTCTTCT GATTATGCTGAGAATGGCCTAGGCTTTGTTATGTCATGGACTGAGATTTAGGGAAAAGCCTTTCTGGTATAGCATGATAT TCTTATTATTATATATAGTTCCCTTTTCAATTGGAATAAATCATGTCCAGAGTTTTTGATAGACTTCCAAATAGATGTTG CTAGGAGTAAATGATGCAGTGGTTGAATCCTGTTTATGCCTTTACTGTGCTTCTTTAAGTTAATAATTGAATAGTCCATG GTCCATGCTCTTTTCTAGTTGTCCTGTTTATACATCCTTGGGAATCTTAGATAGTCATCCATGCTTAATTAATTTTACAA TGTGTTGTGCTACAGATAATTTCCCAACCTCACAGATTCTTATAGTTCATAAAGTATGTTTTGTGAAGAATCTTTCTATT TAAAAATGATTATCAGCTCTACTCTTCTCGTTGTGGATCAGATTCTTATTCTTTCATTGCTTTTATTATTTATAAAATTA CCTTTTAAGGTGGAGCATGGAGAGCTTGTTTCTTATATTTGACCTAAGATTTTTTATTATTAAACTTGAATAATTAGAGA TGCATTCTTCACTAGACATCATAGTTATTCTTAAACTTTCCCAAAGGTGGTGGAAAAGGAAAGTGGGCTTTCTATGGCTA CAATTCAAGCTTCTATTTTGGATTGACGAATTTGTTCCTAAATTAAATTAATTACCTAAAGTTGTCACATAAAATCATGA AACTTCTAGTGAACTTACATGCTTGTAACATGAAAGATGAATTCTGTCCATAACTGAATTCTTAGATATATAAACTATGC TATCAAAATCTGTCCAGATTCACCATGCCCAGCTAATAGGAATGGCTCCTGTTCGAATTCCTCTGCCGCTTGATCTCAGT GAGGAACCCATATATGTGAATGCAAAGCAGTACCATGCTATTCTCAGGCGCAGACAGTATCGTGCAAAGCTCGAAGCACA GAACAAACTCGCCAAAAATCGGAAAGTAAGTACAAATTTTGCTTCTTCTCCCTTTTAAGATCAATTTTTTTCTGAACCAT ATTATGAATATTGTGTTCTGCAGCCATATCTTCACGAGTCACGCCATCTACATGCAATGAAAAGAGCTAGAGGTTCTGGC GGACGTTTCCTGAACACAAAAAAGCTCCAAGAGTCAAAGCTCACTTCAAAGAACCATGGCTTTGGTGCGTCCAATTGTAC TCAGTTGAATCTGAGCGGAAACATGTCAGAATCTGAGGTCGGTCGAGTGGAAAACTACGGAGATGGTGTTTCCGCAACCA CCTGTTCTGATGTTACAAGTGGATCTAACAGTGACTGCATCCTCAAGCAACAGGAATTAGAGTTCAGACTGTGTGGTTAC CCTTCTCATATTGGAAGAAATATGCAGGGTTACGCGGCAAACATGGGTAGTGGTGGTGGTGGGAATCCACACCATCTATC AGTTCTTCTCTGAAAAAGTGGCACATTGTAGCTAGTTATTCCTCTGCATTCAGTTGGAGAAGGTAACTGCTTGTGTTCCA TTGGGAAGTCATCCTTGGCTCATTTATATTATGTCTTACTAGTTTGTTTTCATGTTAATTGTTCAAGAACAAGGATAGGA ACCTTTGCCAGATATTATGTTTTGTTAATTGTCCAAGAATAAGGATAGGGACCTTTGCTATATATTATGTATTATGTATT ACTACTCTGAAAATGTTTGGTCAAAGAAGAACATTGCAAAAATTCCGTTCGGTCCTTGTCGTGTTTCCTTTGGTTTATAT TGTACTTTAAATGGTCTTGGTAACGCCCTCACAAGCATTAGTGGGTAGTTCATAGTTGTTTTGAATAGTAGATAACTCCA GACATGAAT
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0417600.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCCACTAGTTATACCATGAAGATGAGTTCTTTACCACAACAATGTCACCAGACTAAGCCACTGAGTTTGAAATTTCA AGACCAAGATTCTTGTTCAACTCAATCAACAGGGCAATCTTATCCGAAAGTTGGTTCAGCACAATCAGGTCAAATTTCTG TTCAGTATAGCAATTCTTCTGATTGTTCAACAGTAAGCAAAACTGGGGAAGAGAGTGTGGAAGGTTTCATCAGGTCATCT GCAGTGACTCGGGATTTTACCTTCCCTCCTTCACAATTGAGCTACAACCAATCACTTGCGAATATTGCTTTCCACCATGC TGAGCCATGCTTCAGTGGCCTACTAGCTGCTCCATATGGGCCACAGCCTAATATTCACCATGCCCAGCTAATAGGAATGG CTCCTGTTCGAATTCCTCTGCCGCTTGATCTCAGTGAGGAACCCATATATGTGAATGCAAAGCAGTACCATGCTATTCTC AGGCGCAGACAGTATCGTGCAAAGCTCGAAGCACAGAACAAACTCGCCAAAAATCGGAAACCATATCTTCACGAGTCACG CCATCTACATGCAATGAAAAGAGCTAGAGGTTCTGGCGGACGTTTCCTGAACACAAAAAAGCTCCAAGAGTCAAAGCTCA CTTCAAAGAACCATGGCTTTGGTGCGTCCAATTGTACTCAGTTGAATCTGAGCGGAAACATGTCAGAATCTGAGGTCGGT CGAGTGGAAAACTACGGAGATGGTGTTTCCGCAACCACCTGTTCTGATGTTACAAGTGGATCTAACAGTGACTGCATCCT CAAGCAACAGGAATTAGAGTTCAGACTGTGTGGTTACCCTTCTCATATTGGAAGAAATATGCAGGGTTACGCGGCAAACA TGGGTAGTGGTGGTGGTGGGAATCCACACCATCTATCAGTTCTTCTCTGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0417600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSTSYTMKMSSLPQQCHQTKPLSLKFQDQDSCSTQSTGQSYPKVGSAQSGQISVQYSNSSDCSTVSKTGEESVEGFIRSS AVTRDFTFPPSQLSYNQSLANIAFHHAEPCFSGLLAAPYGPQPNIHHAQLIGMAPVRIPLPLDLSEEPIYVNAKQYHAIL RRRQYRAKLEAQNKLAKNRKPYLHESRHLHAMKRARGSGGRFLNTKKLQESKLTSKNHGFGASNCTQLNLSGNMSESEVG RVENYGDGVSATTCSDVTSGSNSDCILKQQELEFRLCGYPSHIGRNMQGYAANMGSGGGGNPHHLSVLL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12632:SF38
5 308 304 1.8E-144 –
PANTHER
PTHR12632
5 308 304 1.8E-144
IPR001289
SMART
SM00521
144 205 62 2.6E-37
IPR001289
ProSiteProfiles
PS51152
145 205 61 37.841
IPR001289
Pfam
PF02045
147 202 56 1.6E-27
IPR001289
PRINTS
PR00616
148 170 23 2.1E-24
IPR001289
ProSitePatterns
PS00686
150 170 21 -
IPR018362
PRINTS
PR00616
179 202 24 2.1E-24
IPR001289

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0016602
Cellular component CCAAT-binding factor complex A heteromeric transcription factor complex that binds to the CCAAT-box upstream of promoters; functions as both an activator and a repressor, depending on its interacting cofactors. Typically trimeric consisting of NFYA, NFYB and NFYC subunits. In Saccharomyces, it activates the transcription of genes in response to growth in a nonfermentable carbon source and consists of four known subunits: HAP2, HAP3, HAP4 and HAP5.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0417600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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