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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0425500 |
| Transcript ID | LotjaGi3g1v0425500.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane 9 superfamily member; TAIR: AT3G13772.1 transmembrane nine 7; Swiss-Prot: sp|Q9LIC2|TMN7_ARATH Transmembrane 9 superfamily member 7; TrEMBL-Plants: tr|I1KGC3|I1KGC3_SOYBN Transmembrane 9 superfamily member; Found in the gene: LotjaGi3g1v0425500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:83509808..83512813) extracted from Lotus japonicus Gifu genome v1.2.
GCCCCAATCCCGTCGCAGACCCCTGCCGCGCACTATCGATAACTATGGTGTTGAGTGATAAATCTTGATTTTGATTTTGA TAATTGGTAGGTGCATGTGAAACTGTTTGTTAGATAGGGATGTGTGGTATGTGGTCGCGTGTGATTTGTGAATTCGTAAT TTTTTAGTTTTGATTTGGAAAGTGTGGTTGAGATTGAGAACGTTTTGTCTCAATTTGTTGATTTTTTTGGGTTCTAGTTT TATTGCTTGTGCTTGAAGATTTTGATTTCTTGTTTCTTCTGTGGGAACAGGGTGATGCCCTTTATGTCAAAGTGAACAAA TTATCATCTACCAAGACTCAACTTCCGTATGACTACTACTACTTGAAGTATTGCAAACCCTCCAAGATTCTGAACAGCGC AGAAAATTTGGGAGAGGTTCTTCGAGGCGATCGTATTGAAAATTCTATATATACGGTGGGTATCTATCACCTCTTCCTGT AACAATTGGATAACATGGCCATGGAATTCAGTGACTATTGTTTGTTTTGTTATGCCAACCTAAGGAATTTTGTTCTCTTT TCCCCTCAGTTTCACATGAGGAAAGAACAGTCTTGTACTGTTTCTTGTCATCAAATTTTGGATGCTGAAGCTGCGAAGAA TTTTAAAGAAAAAATTGATGATGAATATCGAGTGAACATGTAAGTGTTCAGTATACTGAGGCCGGTACCTAGTTATATAG TAGTATTATGAATTTATCAAATTACTCTTCTGAGATTTGTAGGCCAGTTTATACTTTATAGGTTTCTTTCGGCTTTGTAT TTCTTTGATCCTTAAAGCTTTGAATTGAACATGCAGGATTTTGGATAACCTTCCAGTTGCTGTTCTTAGACAAAGGAGGG ATGGAAGTCAATCAACAACATATGAGCATGGTTTTCGTGTTGGGTTCAAGGGAAACTATCAAGGGGTATAACTCAGCTTG AATTTCTATTGTGGAATTTCAATTATCATTTTTGTCTTCTGATTCTTACAATTTTCCAATTTTCCTGCAGAGCAAGGAAG AGAAATATTTTATCAATAACCACTTGAGTTTTAGAGTCATGTATCACAAGGATCCTGAAACTGGTTCTGCTCGCATTGTT GGATTTGAGGTCACACCAAACAGGTCTTGTTCTTTTCTTCACCTTCCTAACTCTCTCTCTCTCTCTCTCTACATATGTGT GTGTGTTTATGTATCTGCTTACGGGGTAGTTCATTCTTATGTTGGCATAACATGGCCGTTGGATTTTATTTTTTATATCT GGAATTGGATGTTGTTTGGAAGAAAGCAAGCTGGAACTGATTAGTTGGATGATTTTCTAATAGATCTTACCTATGTGGTG ATATAGCTTTTGTTCTAATAATATTTTGTCATAGACATCTTATGGATGGTCTCTTAGATACTCCTGTCCTCTTTCCTGAT AGGTATCATACTTTTTGCTTTTTACAATTTTGCTTGTTCACCTGTGTTGAGTATATTTTTTATAATAGAGTACCTAACTA CCTATATATATGATTGCTTTCTTGTTACATTTCAAATGACTGCTTAAGGTATGTTCTGTCTCTCTTATGAGTTCTACAAA TGTAAACAGTATTAATCATGAATACAAGGAGTGGAATGACAAAAATCCGCAAGTAACAACATGTAATAAAGATACCAAGA ATTTGATGCAAGGTAGTACTGTCCCACAAGAAGTTGATACAGGCAAGGACATCGTATTCACATATGATGTTTCCTTTAAG GTATTGCTGATTGAAAGCTTGACATTCATCAACTCTCACCTCATCCATTATATGACTCTATAAGCTAAGTTTTCTGCCCC TTTTCCAGGAAAGTGATATCAAATGGGCATCACGATGGGACACATATCTTCTAATGAATGATGATCAGATCCACTGGTTT TCTATCATAAACTCTCTGATGATTGTGCTTTTCCTTTCTGGAATGGTGGCAATGATCATGATGAGGACTCTTTACAGAGA CATTGCCAATTATAACCAGCTAGAAACCCAAGATGAGGCCCAAGAAGAAACAGGGTGGAAACTTGTTCATGGAGATGTTT TCAGGGCACCAGTCAATTCAAATTTGCTTTGTGTTTATGTTGGTACTGGTGTTCAGATCTTTGCAATGACACTTGTGACA ATGATATTTGCTTTGCTAGGGTTCCTATCTCCGTCCAATCGGGGTGGTCTCATGACTGCAATGGTTCTATTGTGGGTTTT TATGGGTTTATTTGCTGGCTACTCCTCAGCACGTTTGTACAAGATGTTCAAGGGCACAGAGTGGAAGAGGAATACCTTAA AAACTGCATTTATGTTTCCAGGCATACTTTTCGCTATCTTCTTTGTGCTGAATGCTTTAATCTGGGGGGAAAAGTCCTCT GGAGCAGTCCCTTTTGGAACAATGTTCGCTCTAGTCTGCCTATGGTTTGGTATTTCAGTGCCCTTGGTCTTTGTGGGCAG TTACTTGGGTTTTAAAAAACCAGCAATTGAAGACCCTGTGAAGACTAATAAAATTCCTAGGCAGGTACCTGAGCAGGCAT GGTACATGACACCCGTCTTCTCTATTCTTATTGGTGGCATTCTTCCATTTGGTGCAGTGTTCATCGAGCTCTTCTTTATC CTGACATCAATATGGCTAAACCAGTTCTACTACATCTTTGGCTTCCTTTTCATAGTGTTTGTTATCCTATTGATCACCTG TGCAGAGATTACGGTTGTGCTTTGCTACTTCCAATTGTGCAGTGAAGACTACAACTGGTGGTGGAGAGCTTACCTTACTG CTGGATCCTCAGCTCTGTACCTCTTCCTTTACTCAATTTTCTATTTCTTCACTAAGTTGGAGATTACAAAGCTGGTCTCG GGCATCCTTTACTTTGGATATATGGTAATTGGTTCATATGCCTTCTTTGTGTTGACTGGAACTATTGGCTTCTATGCTTG CTTCTGGTTTGTCCGCAAGATCTACTCTTCTGTGAAGATTGACTGA
CDS sequence (LotjaGi3g1v0425500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGAAAGAACAGTCTTGTACTGTTTCTTGTCATCAAATTTTGGATGCTGAAGCTGCGAAGAATTTTAAAGAAAAAAT TGATGATGAATATCGAGTGAACATGATTTTGGATAACCTTCCAGTTGCTGTTCTTAGACAAAGGAGGGATGGAAGTCAAT CAACAACATATGAGCATGGTTTTCGTGTTGGGTTCAAGGGAAACTATCAAGGGAGCAAGGAAGAGAAATATTTTATCAAT AACCACTTGAGTTTTAGAGTCATGTATCACAAGGATCCTGAAACTGGTTCTGCTCGCATTGTTGGATTTGAGGTCACACC AAACAGTATTAATCATGAATACAAGGAGTGGAATGACAAAAATCCGCAAGTAACAACATGTAATAAAGATACCAAGAATT TGATGCAAGGTAGTACTGTCCCACAAGAAGTTGATACAGGCAAGGACATCGTATTCACATATGATGTTTCCTTTAAGGAA AGTGATATCAAATGGGCATCACGATGGGACACATATCTTCTAATGAATGATGATCAGATCCACTGGTTTTCTATCATAAA CTCTCTGATGATTGTGCTTTTCCTTTCTGGAATGGTGGCAATGATCATGATGAGGACTCTTTACAGAGACATTGCCAATT ATAACCAGCTAGAAACCCAAGATGAGGCCCAAGAAGAAACAGGGTGGAAACTTGTTCATGGAGATGTTTTCAGGGCACCA GTCAATTCAAATTTGCTTTGTGTTTATGTTGGTACTGGTGTTCAGATCTTTGCAATGACACTTGTGACAATGATATTTGC TTTGCTAGGGTTCCTATCTCCGTCCAATCGGGGTGGTCTCATGACTGCAATGGTTCTATTGTGGGTTTTTATGGGTTTAT TTGCTGGCTACTCCTCAGCACGTTTGTACAAGATGTTCAAGGGCACAGAGTGGAAGAGGAATACCTTAAAAACTGCATTT ATGTTTCCAGGCATACTTTTCGCTATCTTCTTTGTGCTGAATGCTTTAATCTGGGGGGAAAAGTCCTCTGGAGCAGTCCC TTTTGGAACAATGTTCGCTCTAGTCTGCCTATGGTTTGGTATTTCAGTGCCCTTGGTCTTTGTGGGCAGTTACTTGGGTT TTAAAAAACCAGCAATTGAAGACCCTGTGAAGACTAATAAAATTCCTAGGCAGGTACCTGAGCAGGCATGGTACATGACA CCCGTCTTCTCTATTCTTATTGGTGGCATTCTTCCATTTGGTGCAGTGTTCATCGAGCTCTTCTTTATCCTGACATCAAT ATGGCTAAACCAGTTCTACTACATCTTTGGCTTCCTTTTCATAGTGTTTGTTATCCTATTGATCACCTGTGCAGAGATTA CGGTTGTGCTTTGCTACTTCCAATTGTGCAGTGAAGACTACAACTGGTGGTGGAGAGCTTACCTTACTGCTGGATCCTCA GCTCTGTACCTCTTCCTTTACTCAATTTTCTATTTCTTCACTAAGTTGGAGATTACAAAGCTGGTCTCGGGCATCCTTTA CTTTGGATATATGGTAATTGGTTCATATGCCTTCTTTGTGTTGACTGGAACTATTGGCTTCTATGCTTGCTTCTGGTTTG TCCGCAAGATCTACTCTTCTGTGAAGATTGACTGA
Protein sequence (LotjaGi3g1v0425500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRKEQSCTVSCHQILDAEAAKNFKEKIDDEYRVNMILDNLPVAVLRQRRDGSQSTTYEHGFRVGFKGNYQGSKEEKYFIN NHLSFRVMYHKDPETGSARIVGFEVTPNSINHEYKEWNDKNPQVTTCNKDTKNLMQGSTVPQEVDTGKDIVFTYDVSFKE SDIKWASRWDTYLLMNDDQIHWFSIINSLMIVLFLSGMVAMIMMRTLYRDIANYNQLETQDEAQEETGWKLVHGDVFRAP VNSNLLCVYVGTGVQIFAMTLVTMIFALLGFLSPSNRGGLMTAMVLLWVFMGLFAGYSSARLYKMFKGTEWKRNTLKTAF MFPGILFAIFFVLNALIWGEKSSGAVPFGTMFALVCLWFGISVPLVFVGSYLGFKKPAIEDPVKTNKIPRQVPEQAWYMT PVFSILIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFIVFVILLITCAEITVVLCYFQLCSEDYNWWWRAYLTAGSS ALYLFLYSIFYFFTKLEITKLVSGILYFGYMVIGSYAFFVLTGTIGFYACFWFVRKIYSSVKID
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 544 | 544 | 0.0 | ||
| Phobius | 1 | 179 | 179 | - | – | |
| PANTHER | 1 | 544 | 544 | 0.0 | – | |
| Pfam | 1 | 500 | 500 | 1.2E-209 | ||
| Phobius | 180 | 203 | 24 | - | – | |
| TMHMM | 180 | 202 | 23 | - | – | |
| SUPERFAMILY | 184 | 366 | 183 | 1.99E-5 | ||
| Phobius | 204 | 245 | 42 | - | – | |
| TMHMM | 246 | 268 | 23 | - | – | |
| Phobius | 246 | 272 | 27 | - | – | |
| CDD | 253 | 515 | 263 | 0.00350552 | – | |
| Phobius | 273 | 277 | 5 | - | – | |
| TMHMM | 278 | 300 | 23 | - | – | |
| Phobius | 278 | 297 | 20 | - | – | |
| Phobius | 298 | 317 | 20 | - | – | |
| Phobius | 318 | 339 | 22 | - | – | |
| TMHMM | 320 | 339 | 20 | - | – | |
| Phobius | 340 | 350 | 11 | - | – | |
| TMHMM | 349 | 371 | 23 | - | – | |
| Phobius | 351 | 374 | 24 | - | – | |
| Phobius | 375 | 394 | 20 | - | – | |
| Phobius | 395 | 428 | 34 | - | – | |
| TMHMM | 403 | 425 | 23 | - | – | |
| Phobius | 429 | 433 | 5 | - | – | |
| Phobius | 434 | 460 | 27 | - | – | |
| TMHMM | 435 | 457 | 23 | - | – | |
| Phobius | 461 | 471 | 11 | - | – | |
| TMHMM | 470 | 492 | 23 | - | – | |
| Phobius | 472 | 493 | 22 | - | – | |
| Phobius | 494 | 504 | 11 | - | – | |
| Phobius | 505 | 534 | 30 | - | – | |
| TMHMM | 512 | 534 | 23 | - | – | |
| Phobius | 535 | 544 | 10 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi3g1v0425500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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