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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0435300 |
| Transcript ID | LotjaGi3g1v0435300.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA repair family protein; TAIR: AT2G45280.1 RAS associated with diabetes protein 51C; Swiss-Prot: sp|Q8GXF0|RA51C_ARATH DNA repair protein RAD51 homolog 3; TrEMBL-Plants: tr|A0A0B2RTD8|A0A0B2RTD8_GLYSO DNA repair protein RAD51 like 3; Found in the gene: LotjaGi3g1v0435300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:84665185..84668902) extracted from Lotus japonicus Gifu genome v1.2.
TCCCATAAAATAACACGGAGGGATATTTTAGTAATTCCCCACTTTAAGTGGGGTGGCAAATCTAAATCTTGGAGTGGAAA ATCCAGTTCTCCGATTTTCAGTGCTATTTTCGCCAAAAAGGAATTGACAGTGAAGGTGTGGTGCAAGGGCGACACAGAGA GCGGGAAGCATGGAGGTGGGTATGCTACCAATCTCAGCATCAAAGAGAGGAAAGCTCTTAGCAGCTGGTTACACCACTCT CGATGCCATTGCTCGCTCCTCCCCAACCCACCTTGCTCGAGGTTTCAATTCTAAACCTTTCACTTTCCCTGTAATTTTCT ATTGAGCATGTTTATATGTTACAAACTTCCCTTGTTTTCACATACCCATTACTTCATTTTCACAGATATTGAAGTCTCTG AGGATGAAGCTTCAGAAATTCTCAATTTTGCAACCAAAACTAGTGCTTTGAACAGATCAAATGGGAGTAACATTAATCTT GTTGAGGGTATGTTTTTATTCTAATGATGGATTGTTACTTCTGTTTCCAGTTTGTACTTTAGCTATTCTTTTAGCTAGTG ATCAGAATTTTTATATATGAAAAGTGCATGTTCATTTAAGAAGACCACAACTGTTCTGCATTCATCAATAATCAATTTGT GTCCCCGAAGGTTAGCTTAAGTTGTAAGAGCAAGGGGACATAAGAGTTGGGGGATGAAGGGTGAATGGTCCAGGTGTCGA ACCCTGAGAAGAGACTAATTTACTAACATTTATAACAACTAATATTTGTCTATTAAAAAAAATCAATAATCAATTTGTAT TGAAGGTAATGATGCAAGTTGGTTTAGTACAGGGAAAGCTCCCATCAAACCAATTGTGTGTGTTCCTGAGTTGTGCACTT GAAAATTAAAGAGACTGTACCATGAAATAGGCTTCAACTTTATGATGTCAAGCTTTTAGAACCCAGGATGTATTTTATCT GAGGAACACAAATTAATGGAAACTTTGGCGAAGCTGAGAAGCCAAAAGTAATGCCTTGTATTAATTTAAATTTGGAGCTT CCCACTATGCGAATAAAGATGATTGGGGACATATATAGACACATGTATTAAGGACACTATTATTTAAATTTGTTTACTTG TGTGTGACCTTCTCTTACCATCGGAATACATATACTTTTCAAGTTATAATAACCCTTTTTATTTGTTTCTCTTTTTCTGC ATTTTGTATTTTTGTGTCCAGTAGGTGGACAGACTGCTTGGGATATGCTCAATGAGGAAAAGTTTTCTTCTTGTATTACC ACATCTTGCGTGGATTTGGATAACATCCTTGGTGGAGGAATTAATTGCAAAGAAGTCACTGAGATAGGTTAGTGACTGTT TTGGCTTCTCTTAATAGTATAAACCATAGTTGTGACTTGCAATTAAGTATAAATGACGTTTTTTAGCCCAGATACTTATC CGTTTTGTTTTTTCTTTCTTTCTTCCCTTTTATGGGGCTGCAGTATAATTCTTTGTTTTTTATTTAGGTGGAGTTCCAGG CATTGGTAAAACACAAATTGGGTATGCTTTATCATCTCGATTTCCTTTTATCCCAATTTTCTACCGTGCCAATAATTCTG TTATTTATTGTAATTAGTGGTGTTTACTTTCTCAGGATTCAACTTGCAGTAAATGTTCAGATTCCACTAGAATATGGTGG CCTAGGTGGGAAGGCAATATACATTGGTATGAGACTTAATTAGGTTCTAGTACTCATTCAGTATTCAAAGTTAAAACTTT CTGAAGCACCAAAAAAAGTATTCAACGCAGTTCATTAATTGCTCTTCTTATTCCTCTGTGATACTCAGACACCGAAGGAA GCTTTATGGTTGAACGTGTTCTGCAAATTGCTGAAGCATGCATAGAAGACATGTCAGAATATAGCCACCACTTTCACAAG GATGTTCAAGCTTGTGGAGTTAAAATGCATCCTAATAATATCTTGGAAAATATATATTATTTTCGTGTTTGCAGCTATAC TGAACAAATTGCTTTGGTAAATTACTTAGACAAATTCATCTCGGAGCATAGAGATGTAAGTATACTTGACATGTATTGAA TTGATGACAAACATTTAAGATGATTCTTGACTTCTATTTGTCTTATTACTTCACATCATACATCGCCTTGGATAGTAGTA GCAGTGGAAGTACTCTTGCTCTTAAGTATTCCACCATCTTGATCTTTTTTTTTTCTTTTTTTTAATGCATTATTATAGGT AAAGATAGTCATTATCGACAGTGTTACTTTCCACTTCCGCCAAGACTTTGAAGATATGGCTCTCAGGACTCGGTTACTAA GTGAAATGGCTTTGAAGTTGATGAAGCTTGGAAGAAAGTTTTGTTTGGCTGTAAGAATCTATATACTATGCTTGCCAGAA GTGCTTAGTATTGAACTTAGTTTTTTATTGTAGCCAAATCAGGTTGTTGTATTTGTTTGGACAAAGCGAGTATCTGAGTT TTTGCTTTACAAGAAGGCTTTTCTTCCAGCCTCTGATTCGGTGTGTTGATTTGCCTTGAGCATGGCCTCACCAGAATTCT TGAAGGTCTGCTAGATGAAGCAATTTGGGTATTTGGAAAGACACCCTTGACGCCAAGTTAGTGAATAGGTCAAAAGTCAA AACATTGTTTAAGGAAAGAAAGGGAGAACAACAAAATAAAATTATGAATAGTAACTTGTTTATATAGGGATGGGGGTGAT GTCTTAGCCGGGTGGTGCATTTAGCACCCCTTCCTCATCCTTGTCATGGTATTAGTGTGAATCTACTGTTCCCTTATCCA CCTATGCGCCATGTGTCCAAGGAATCCCTTAGAACCGGAGGGGTAGGTTGTGTATGTGAACCCTCTACCGCTTCATGGTC CAGCTTCCTTGGCTAATTGGCTTGATTCCCAGTCATTTTTTGCCTTCTCTATTTTCTTCTTTTGTACCTTCTCTATTTCA ATTATAAAGTCAAAGGCTGTTAAATTTTCTGGCAGGTTGTTCTGTTGAATCAAGTGACAACCAAGCACATTGAAGGTTCA TTTCAATTGACCCTTGCACTGGGTAAGTGTTATTTCAGCTTACACATCTCACTTGAACTTTTCGCTTGCATGGCCAATAT TTTTTTGCCCCTTTGATCAGATGGAATTTTTTATACTTTGTAATGAAACAGGCGATAGCTGGTCACATTCATGCACGAAC CGGATCATCTTATATTGGAATGGCAGTGAACGTCATGCATTTATTGACAAGTCCCCTTCTCTTAAATCAGCATCTGCACC TTATTCTGTGACCTCTAGGGGGATACGTAATTCTACTTCAGGCTCTAAAAGAATCAAGATGATGTGAGATTTTGTGTAAA AAGACAGTGTATAGCTCAACCTACCCTCGCTCCTTTTGCTTGTTCCTTTCTCACATTTCAGGACACAAGAAGATTATACA ACAATGTTTCTTTTTTTGCCTTTCCTATAATACCTGTAGCCTCAAAGTACAGTGAGTTTTGGATTGGTTTTTTGGATTAA ATTCTTTAGTTAGCATGTCTCTCAAACGAATAGATAAAGGTTTACCCACAGTTAATTTAGTTTAAAGTATATTGTAATTT TGATTTACTGAAATTCATGAATAGACATATTCTTGTTCAGTTTTGTGACAAACTTCCGAGGATTTTTTTTACTTGTTTTG TACTCCATATGGAAAAATTATAGCCACTGATTAGCCCC
CDS sequence (LotjaGi3g1v0435300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGTGGGTATGCTACCAATCTCAGCATCAAAGAGAGGAAAGCTCTTAGCAGCTGGTTACACCACTCTCGATGCCAT TGCTCGCTCCTCCCCAACCCACCTTGCTCGAGATATTGAAGTCTCTGAGGATGAAGCTTCAGAAATTCTCAATTTTGCAA CCAAAACTAGTGCTTTGAACAGATCAAATGGGAGTAACATTAATCTTGTTGAGGGTGGACAGACTGCTTGGGATATGCTC AATGAGGAAAAGTTTTCTTCTTGTATTACCACATCTTGCGTGGATTTGGATAACATCCTTGGTGGAGGAATTAATTGCAA AGAAGTCACTGAGATAGGTGGAGTTCCAGGCATTGGTAAAACACAAATTGGGATTCAACTTGCAGTAAATGTTCAGATTC CACTAGAATATGGTGGCCTAGGTGGGAAGGCAATATACATTGACACCGAAGGAAGCTTTATGGTTGAACGTGTTCTGCAA ATTGCTGAAGCATGCATAGAAGACATGTCAGAATATAGCCACCACTTTCACAAGGATGTTCAAGCTTGTGGAGTTAAAAT GCATCCTAATAATATCTTGGAAAATATATATTATTTTCGTGTTTGCAGCTATACTGAACAAATTGCTTTGGTAAATTACT TAGACAAATTCATCTCGGAGCATAGAGATGTAAAGATAGTCATTATCGACAGTGTTACTTTCCACTTCCGCCAAGACTTT GAAGATATGGCTCTCAGGACTCGGTTACTAAGTGAAATGGCTTTGAAGTTGATGAAGCTTGGAAGAAAGTTTTGTTTGGC TGTTGTTCTGTTGAATCAAGTGACAACCAAGCACATTGAAGGTTCATTTCAATTGACCCTTGCACTGGGCGATAGCTGGT CACATTCATGCACGAACCGGATCATCTTATATTGGAATGGCAGTGAACGTCATGCATTTATTGACAAGTCCCCTTCTCTT AAATCAGCATCTGCACCTTATTCTGTGACCTCTAGGGGGATACGTAATTCTACTTCAGGCTCTAAAAGAATCAAGATGAT GTGA
Protein sequence (LotjaGi3g1v0435300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEVGMLPISASKRGKLLAAGYTTLDAIARSSPTHLARDIEVSEDEASEILNFATKTSALNRSNGSNINLVEGGQTAWDML NEEKFSSCITTSCVDLDNILGGGINCKEVTEIGGVPGIGKTQIGIQLAVNVQIPLEYGGLGGKAIYIDTEGSFMVERVLQ IAEACIEDMSEYSHHFHKDVQACGVKMHPNNILENIYYFRVCSYTEQIALVNYLDKFISEHRDVKIVIIDSVTFHFRQDF EDMALRTRLLSEMALKLMKLGRKFCLAVVLLNQVTTKHIEGSFQLTLALGDSWSHSCTNRIILYWNGSERHAFIDKSPSL KSASAPYSVTSRGIRNSTSGSKRIKMM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 346 | 346 | 4.1E-142 | – | |
| PIRSF | 1 | 339 | 339 | 1.6E-92 | ||
| SUPERFAMILY | 4 | 56 | 53 | 5.65E-5 | ||
| Gene3D | 14 | 56 | 43 | 9.5E-6 | – | |
| Gene3D | 72 | 344 | 273 | 5.7E-71 | – | |
| Pfam | 74 | 336 | 263 | 3.4E-45 | ||
| ProSiteProfiles | 85 | 274 | 190 | 52.335 | ||
| SUPERFAMILY | 88 | 335 | 248 | 2.3E-43 | ||
| CDD | 89 | 335 | 247 | 1.06071E-99 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. | ||
| Molecular function | DNA-dependent ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of single- or double-stranded DNA, and it drives another reaction. |
Expression pattern of LotjaGi3g1v0435300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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