Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0435300 |
| Transcript ID | LotjaGi3g1v0435300.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA repair family protein; TAIR: AT2G45280.1 RAS associated with diabetes protein 51C; Swiss-Prot: sp|Q8GXF0|RA51C_ARATH DNA repair protein RAD51 homolog 3; TrEMBL-Plants: tr|A0A0R0KE22|A0A0R0KE22_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0435300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:84665556..84668733) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAGGTGGGTATGCTACCAATCTCAGCATCAAAGAGAGGAAAGCTCTTAGCAGCTGGTTACACCACTCTCGATGCCAT TGCTCGCTCCTCCCCAACCCACCTTGCTCGAGGTTTCAATTCTAAACCTTTCACTTTCCCTGTAATTTTCTATTGAGCAT GTTTATATGTTACAAACTTCCCTTGTTTTCACATACCCATTACTTCATTTTCACAGATATTGAAGTCTCTGAGGATGAAG CTTCAGAAATTCTCAATTTTGCAACCAAAACTAGTGCTTTGAACAGATCAAATGGGAGTAACATTAATCTTGTTGAGGGT ATGTTTTTATTCTAATGATGGATTGTTACTTCTGTTTCCAGTTTGTACTTTAGCTATTCTTTTAGCTAGTGATCAGAATT TTTATATATGAAAAGTGCATGTTCATTTAAGAAGACCACAACTGTTCTGCATTCATCAATAATCAATTTGTGTCCCCGAA GGTTAGCTTAAGTTGTAAGAGCAAGGGGACATAAGAGTTGGGGGATGAAGGGTGAATGGTCCAGGTGTCGAACCCTGAGA AGAGACTAATTTACTAACATTTATAACAACTAATATTTGTCTATTAAAAAAAATCAATAATCAATTTGTATTGAAGGTAA TGATGCAAGTTGGTTTAGTACAGGGAAAGCTCCCATCAAACCAATTGTGTGTGTTCCTGAGTTGTGCACTTGAAAATTAA AGAGACTGTACCATGAAATAGGCTTCAACTTTATGATGTCAAGCTTTTAGAACCCAGGATGTATTTTATCTGAGGAACAC AAATTAATGGAAACTTTGGCGAAGCTGAGAAGCCAAAAGTAATGCCTTGTATTAATTTAAATTTGGAGCTTCCCACTATG CGAATAAAGATGATTGGGGACATATATAGACACATGTATTAAGGACACTATTATTTAAATTTGTTTACTTGTGTGTGACC TTCTCTTACCATCGGAATACATATACTTTTCAAGTTATAATAACCCTTTTTATTTGTTTCTCTTTTTCTGCATTTTGTAT TTTTGTGTCCAGTAGGTGGACAGACTGCTTGGGATATGCTCAATGAGGAAAAGTTTTCTTCTTGTATTACCACATCTTGC GTGGATTTGGATAACATCCTTGGTGGAGGAATTAATTGCAAAGAAGTCACTGAGATAGGTTAGTGACTGTTTTGGCTTCT CTTAATAGTATAAACCATAGTTGTGACTTGCAATTAAGTATAAATGACGTTTTTTAGCCCAGATACTTATCCGTTTTGTT TTTTCTTTCTTTCTTCCCTTTTATGGGGCTGCAGTATAATTCTTTGTTTTTTATTTAGGTGGAGTTCCAGGCATTGGTAA AACACAAATTGGGTATGCTTTATCATCTCGATTTCCTTTTATCCCAATTTTCTACCGTGCCAATAATTCTGTTATTTATT GTAATTAGTGGTGTTTACTTTCTCAGGATTCAACTTGCAGTAAATGTTCAGATTCCACTAGAATATGGTGGCCTAGGTGG GAAGGCAATATACATTGGTATGAGACTTAATTAGGTTCTAGTACTCATTCAGTATTCAAAGTTAAAACTTTCTGAAGCAC CAAAAAAAGTATTCAACGCAGTTCATTAATTGCTCTTCTTATTCCTCTGTGATACTCAGACACCGAAGGAAGCTTTATGG TTGAACGTGTTCTGCAAATTGCTGAAGCATGCATAGAAGACATGTCAGAATATAGCCACCACTTTCACAAGGATGTTCAA GCTTGTGGAGTTAAAATGCATCCTAATAATATCTTGGAAAATATATATTATTTTCGTGTTTGCAGCTATACTGAACAAAT TGCTTTGGTAAATTACTTAGACAAATTCATCTCGGAGCATAGAGATGTAAGTATACTTGACATGTATTGAATTGATGACA AACATTTAAGATGATTCTTGACTTCTATTTGTCTTATTACTTCACATCATACATCGCCTTGGATAGTAGTAGCAGTGGAA GTACTCTTGCTCTTAAGTATTCCACCATCTTGATCTTTTTTTTTTCTTTTTTTTAATGCATTATTATAGGTAAAGATAGT CATTATCGACAGTGTTACTTTCCACTTCCGCCAAGACTTTGAAGATATGGCTCTCAGGACTCGGTTACTAAGTGAAATGG CTTTGAAGTTGATGAAGCTTGGAAGAAAGTTTTGTTTGGCTGTAAGAATCTATATACTATGCTTGCCAGAAGTGCTTAGT ATTGAACTTAGTTTTTTATTGTAGCCAAATCAGGTTGTTGTATTTGTTTGGACAAAGCGAGTATCTGAGTTTTTGCTTTA CAAGAAGGCTTTTCTTCCAGCCTCTGATTCGGTGTGTTGATTTGCCTTGAGCATGGCCTCACCAGAATTCTTGAAGGTCT GCTAGATGAAGCAATTTGGGTATTTGGAAAGACACCCTTGACGCCAAGTTAGTGAATAGGTCAAAAGTCAAAACATTGTT TAAGGAAAGAAAGGGAGAACAACAAAATAAAATTATGAATAGTAACTTGTTTATATAGGGATGGGGGTGATGTCTTAGCC GGGTGGTGCATTTAGCACCCCTTCCTCATCCTTGTCATGGTATTAGTGTGAATCTACTGTTCCCTTATCCACCTATGCGC CATGTGTCCAAGGAATCCCTTAGAACCGGAGGGGTAGGTTGTGTATGTGAACCCTCTACCGCTTCATGGTCCAGCTTCCT TGGCTAATTGGCTTGATTCCCAGTCATTTTTTGCCTTCTCTATTTTCTTCTTTTGTACCTTCTCTATTTCAATTATAAAG TCAAAGGCTGTTAAATTTTCTGGCAGGTTGTTCTGTTGAATCAAGTGACAACCAAGCACATTGAAGGTTCATTTCAATTG ACCCTTGCACTGGGTAAGTGTTATTTCAGCTTACACATCTCACTTGAACTTTTCGCTTGCATGGCCAATATTTTTTTGCC CCTTTGATCAGATGGAATTTTTTATACTTTGTAATGAAACAGGCGATAGCTGGTCACATTCATGCACGAACCGGATCATC TTATATTGGAATGGCAGTGAACGTCATGCATTTATTGACAAGTCCCCTTCTCTTAAATCAGCATCTGCACCTTATTCTGT GACCTCTAGGGGGATACGTAATTCTACTTCAGGCTCTAAAAGAATCAAGATGATGTGA
CDS sequence (LotjaGi3g1v0435300.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGTGGGTATGCTACCAATCTCAGCATCAAAGAGAGGAAAGCTCTTAGCAGCTGGTTACACCACTCTCGATGCCAT TGCTCGCTCCTCCCCAACCCACCTTGCTCGAGATATTGAAGTCTCTGAGGATGAAGCTTCAGAAATTCTCAATTTTGCAA CCAAAACTAGTGCTTTGAACAGATCAAATGGGAGTAACATTAATCTTGTTGAGGATTTGGATAACATCCTTGGTGGAGGA ATTAATTGCAAAGAAGTCACTGAGATAGGTGGAGTTCCAGGCATTGGTAAAACACAAATTGGGATTCAACTTGCAGTAAA TGTTCAGATTCCACTAGAATATGGTGGCCTAGGTGGGAAGGCAATATACATTGACACCGAAGGAAGCTTTATGGTTGAAC GTGTTCTGCAAATTGCTGAAGCATGCATAGAAGACATGTCAGAATATAGCCACCACTTTCACAAGGATGTTCAAGCTTGT GGAGTTAAAATGCATCCTAATAATATCTTGGAAAATATATATTATTTTCGTGTTTGCAGCTATACTGAACAAATTGCTTT GGTAAATTACTTAGACAAATTCATCTCGGAGCATAGAGATGTAAAGATAGTCATTATCGACAGTGTTACTTTCCACTTCC GCCAAGACTTTGAAGATATGGCTCTCAGGACTCGGTTACTAAGTGAAATGGCTTTGAAGTTGATGAAGCTTGGAAGAAAG TTTTGTTTGGCTGTTGTTCTGTTGAATCAAGTGACAACCAAGCACATTGAAGGTTCATTTCAATTGACCCTTGCACTGGG CGATAGCTGGTCACATTCATGCACGAACCGGATCATCTTATATTGGAATGGCAGTGAACGTCATGCATTTATTGACAAGT CCCCTTCTCTTAAATCAGCATCTGCACCTTATTCTGTGACCTCTAGGGGGATACGTAATTCTACTTCAGGCTCTAAAAGA ATCAAGATGATGTGA
Protein sequence (LotjaGi3g1v0435300.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEVGMLPISASKRGKLLAAGYTTLDAIARSSPTHLARDIEVSEDEASEILNFATKTSALNRSNGSNINLVEDLDNILGGG INCKEVTEIGGVPGIGKTQIGIQLAVNVQIPLEYGGLGGKAIYIDTEGSFMVERVLQIAEACIEDMSEYSHHFHKDVQAC GVKMHPNNILENIYYFRVCSYTEQIALVNYLDKFISEHRDVKIVIIDSVTFHFRQDFEDMALRTRLLSEMALKLMKLGRK FCLAVVLLNQVTTKHIEGSFQLTLALGDSWSHSCTNRIILYWNGSERHAFIDKSPSLKSASAPYSVTSRGIRNSTSGSKR IKMM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 323 | 323 | 1.3E-130 | – | |
| PIRSF | 1 | 316 | 316 | 1.1E-85 | ||
| SUPERFAMILY | 4 | 56 | 53 | 5.02E-5 | ||
| Gene3D | 14 | 56 | 43 | 8.6E-6 | – | |
| ProSiteProfiles | 62 | 251 | 190 | 46.625 | ||
| Gene3D | 69 | 321 | 253 | 2.7E-67 | – | |
| SUPERFAMILY | 70 | 312 | 243 | 2.4E-42 | ||
| Pfam | 71 | 313 | 243 | 3.2E-42 | ||
| CDD | 71 | 312 | 242 | 2.12275E-96 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. | ||
| Molecular function | DNA-dependent ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of single- or double-stranded DNA, and it drives another reaction. |
Expression pattern of LotjaGi3g1v0435300.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…