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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0438600 |
| Transcript ID | LotjaGi3g1v0438600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cytochrome b6-f complex iron-sulfur subunit; TAIR: AT4G03280.1 photosynthetic electron transfer C; Swiss-Prot: sp|P26291|UCRIA_PEA Cytochrome b6-f complex iron-sulfur subunit, chloroplastic; TrEMBL-Plants: tr|I3RZ73|I3RZ73_LOTJA Cytochrome b6-f complex iron-sulfur subunit; Found in the gene: LotjaGi3g1v0438600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:85169070..85172274) extracted from Lotus japonicus Gifu genome v1.2.
TCGAAATTGCGATTGCAATCAAATACAGTAATACACCCAAAAGAAAACATATATTCACCTCACAATTTTTTAAAATTTTG ACAAAAAAGAAATTCAAGTTGCTGGATGGAAATCTAAAGAAAAAAAATAACAATCTGGATGGCTTAAGAACGTGTGGCTA GGTGACACCAACATGGCCTTAGTGCCTTATCCATGATCAACTGTTGTGTTGACAGTTGTGGTGGTCGTTTAAGCTTGTTT GCTCAACACCATCTTATTACATATCTCCTCTTTCATTCTCTATCTCAGAAATTCTTCATCTTCAACCATGTCGTCCACAA CTCTCTCCCCTGTAACCCCTTCACAGGTATTACACTAGAAACAATGTTGTTATTTTTTTTCTTTCTTTCTTTCTCTGCAA CAAGCAAGTGAGAGTTTTTGTTTTGATTTCAGCTATGTTCTGGAAAGAGTGGAATTTTCTGTCCCTCACAAGCGCTTCTT GTGAAACCAGCAAGGAACCAGATGGTGGGGAAGGCCAAGGGGATTAGAATTGCTTGCATGGCTACCAGCATTCCTGCTGA TCGAGTCCCTGATATGGAGAAAAGGAAGCTCTTGAATTTGCTTCTTCTTGGTGCTATTTCACTCCCCAGTGCTGGAATGC TTGTCCCTTATGCCACCTTCTTCGCCCCTCCAGGGTAGGTTAACCTTCTCCATTATTGTTTTTATAGAAATTGAACTAGT AACTCAACCTATTTATGAATTGTGTTTTGGGTGTACTTATTGAACTCAACTGTTCCACTTTTTTGTTTTGCACTAGTAAC AACGGATATCCAAACATAGCTATATGACTTGTACAATTGTGTGAATTGGTGTATAGTTTTAATCATATCTGTTTGTAGGT TTTGAATTAATTTTCTAAGTCTTAACCATTGTAGAGCAAAAGGATGGTTATTAGCAATCAGCTTTTCCTACTATAATTAA AGAAGCACTAAGAAAATTGGTAAAATATTTGGTATTAATAGTCCTCTTGAACTAATAGTTCATGTGATCTAAGGGGGATT GGATCCTCTCCAATGTCATGACCGCTGGAGAGAGATTTCAACCGTCCAAAATTTGGTGGAGTAAAAGGTTATTCTGGATG GCTAGGATTTTTCTCCACTGTCGTGTCATTGAGAAGCATTCCTTACAAACCTTGAATTTGATTTCATTTCCCTTGATATG TAACGTTTTACTTAAACATAATTGTACAACAGCTTGAGGCTAATTCTTGTTTGGTTATAATGGTCGTGATTTTTACTGTG AGAGGGAAAGAAATGATGGAAGTTAAAACTTGGGGCATATTCCTATTGTTTGGGAGGAGTATGGAATTGATTGTTTCTTA CTTCTTGAAATGTTGCTTCCATTCTTAGCACTTTGCTTTCTTTTCATGTTAGCTTTAAAAGTTTTAATACATTGTATAAA CTTATCTTATTATAATACAACATGCTAAAAGAGTCCTTAAACTGTTATTTGGTTCAAAGGAACACATATCCTAAAAGAAT CAAAATTCAGTGATTAACTGTTGACCTGCCAATGTGCTGTATATTAATCTTAGTTTCTTCATCTATGCAAATTGCAGGTC AGGTTCTGCAACTGGTGGTACTATTGCAAAGGATGCCATTGGAAATGATGTAGTTGCAGAGCAATGGCTCAAGGCACATG GACCTGGTGACCGTACGCTTACACAAGGATTGAAGGTACGAAGTGCTTACAGCCGTTCATTGGCTAGAGTTTTCATAGAT CTTCCACAAGCTGCAGATACTTTACATATAATGTTGAAAGCAATTGTTTTCTCAGACTATTATAGTATTATGCTTCAATG TTCAATGCCATTTCCCATTGCTTCTTTCCTTCTTCTCAATGTTATTCTCTTTGCTCAACAAAATTATCTTGCCATACTAT GCAAAATTTATGTGGTAAATTGCAATTCTAGCCATAACAAGTTAACAACCCAAGATCTGGCCTTATATAAGTAAAATAAA TTTCCTTCTCAAGCTTCCTAGTTCCTACCATAATAACTATTTTCATGATTTGAATCCCAGGGAGATCCTACCTACCTTGT GGTGGAGAAAGACAGAACACTTGCAACATATGGTATTAACGCTGTTTGCACCCACCTTGGGTGTGTCGTGCCGTTTAATA CAGCTGAGAAAAAGTTCATCTGCCCCTGCCATGGATCTCAGTACAATGACCAAGGAAGAGTTGTGAGAGGACCTGCTCCC TTGGTAAGCAAATTAGAAAAACCTTTTCTTTTGACATTCTTTTCGCTGCATGTGTTTTGACTTAGAAGCATAGCATTTAG ACTTGTTATGGTTTATTTCTTAGAACTTGCTTCACTTATCTGTTACTCTAATTACTGTACTAGCATTGAATATTTTTGTT GTTCTTGTTGTATGTCAGTCTCTGGCATTGGCACATTGTGATGTGGTTGATGGGAAGGTGGTGTTTGTTCCTTGGGTCGA AACAGATTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAATTCTTAAAGCTGTGCCTCGGCTGTCATATATTTAAATC TGAAATACAAACAATCTGTTTTTGTATTAATGCATAAACACATTTTGTAACGCAGTTTGATGCTGGTATATGATGAAAAG GAACCTCAATTGTCAACTGTTTTCCCCTATAATTCATGTTTCCTTATCATATCCTTACTAGTTAGTGTAAATTTTATTTT AAGAGCAAGTTGTGTGAAAAAAGAAAAAAATATGGTAGATATTCCCTTCTCATTCTCACATGTCAACCATTTTAGTCGTG CGCGAAGAGAGGTAGAGGGAGACCTAAAAGAGCATGAAAACACATTGTTATAAAATAGCTCATTATCAATAGTATTCCTC GTAAGTTAGTTTTTGGTCGAGCCAATGACGTAATGTGATCTATATAGCCGACCTCACTTAGTGGGATAATGCTTTTGTTG TTGAATGTCACAACCATTTGACACTCTCCAGCACTATCGCTATTGAGCACCTTTCACCATTGTCGTTTGGCGTCATTTAC TCATGTCACACTTTTTTGTGTCAAAAATGTTAGGAACAATACCCAAAGTGTGGTCACATAACACTTACAACAATAAATCT CAAAGAGTGATACCCCAAAACAGAAACATAAACAATTAAAAACAAGCATTCTCTATTATAAAAAAAGATAAAAATAAAAA CAAGC
CDS sequence (LotjaGi3g1v0438600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGTCCACAACTCTCTCCCCTGTAACCCCTTCACAGCTATGTTCTGGAAAGAGTGGAATTTTCTGTCCCTCACAAGC GCTTCTTGTGAAACCAGCAAGGAACCAGATGGTGGGGAAGGCCAAGGGGATTAGAATTGCTTGCATGGCTACCAGCATTC CTGCTGATCGAGTCCCTGATATGGAGAAAAGGAAGCTCTTGAATTTGCTTCTTCTTGGTGCTATTTCACTCCCCAGTGCT GGAATGCTTGTCCCTTATGCCACCTTCTTCGCCCCTCCAGGGTCAGGTTCTGCAACTGGTGGTACTATTGCAAAGGATGC CATTGGAAATGATGTAGTTGCAGAGCAATGGCTCAAGGCACATGGACCTGGTGACCGTACGCTTACACAAGGATTGAAGG GAGATCCTACCTACCTTGTGGTGGAGAAAGACAGAACACTTGCAACATATGGTATTAACGCTGTTTGCACCCACCTTGGG TGTGTCGTGCCGTTTAATACAGCTGAGAAAAAGTTCATCTGCCCCTGCCATGGATCTCAGTACAATGACCAAGGAAGAGT TGTGAGAGGACCTGCTCCCTTGTCTCTGGCATTGGCACATTGTGATGTGGTTGATGGGAAGGTGGTGTTTGTTCCTTGGG TCGAAACAGATTTCAGAACTGGTGATGCTCCATGGTGGGCTTAG
Protein sequence (LotjaGi3g1v0438600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSTTLSPVTPSQLCSGKSGIFCPSQALLVKPARNQMVGKAKGIRIACMATSIPADRVPDMEKRKLLNLLLLGAISLPSA GMLVPYATFFAPPGSGSATGGTIAKDAIGNDVVAEQWLKAHGPGDRTLTQGLKGDPTYLVVEKDRTLATYGINAVCTHLG CVVPFNTAEKKFICPCHGSQYNDQGRVVRGPAPLSLALAHCDVVDGKVVFVPWVETDFRTGDAPWWA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 65 | 65 | - | – | |
| PANTHER | 5 | 227 | 223 | 7.6E-120 | – | |
| PANTHER | 5 | 227 | 223 | 7.6E-120 | ||
| Gene3D | 49 | 92 | 44 | 1.7E-14 | – | |
| Hamap | 50 | 227 | 178 | 37.031 | ||
| SUPERFAMILY | 56 | 226 | 171 | 3.74E-32 | ||
| Pfam | 56 | 94 | 39 | 2.6E-18 | – | |
| Phobius | 66 | 87 | 22 | - | – | |
| TMHMM | 66 | 88 | 23 | - | – | |
| Phobius | 88 | 227 | 140 | - | – | |
| Gene3D | 93 | 227 | 135 | 6.3E-45 | ||
| CDD | 102 | 227 | 126 | 5.78221E-91 | – | |
| ProSiteProfiles | 114 | 210 | 97 | 21.513 | ||
| Pfam | 139 | 196 | 58 | 5.0E-12 | ||
| PRINTS | 151 | 162 | 12 | 1.4E-14 | ||
| PRINTS | 172 | 184 | 13 | 1.4E-14 | ||
| PRINTS | 184 | 196 | 13 | 1.4E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquinol-cytochrome-c reductase activity | Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: CoQH2 + 2 ferricytochrome c = CoQ + 2 ferrocytochrome c + 2 H+. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Molecular function | Oxidoreductase activity, acting on diphenols and related substances as donors | Catalysis of an oxidation-reduction (redox) reaction in which a diphenol or related substance acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. | ||
| Molecular function | Electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity | Enables the directed movement of electrons within the cytochrome b6/f complex of photosystem II. | ||
| Molecular function | 2 iron, 2 sulfur cluster binding | Interacting selectively and non-covalently with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi3g1v0438600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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