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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0445700 |
| Transcript ID | LotjaGi3g1v0445700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT4G28370.1 RING/U-box superfamily protein; Swiss-Prot: sp|P36096|TUL1_YEAST Transmembrane E3 ubiquitin-protein ligase 1; TrEMBL-Plants: tr|K7M2N3|K7M2N3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0445700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:85900601..85907938) extracted from Lotus japonicus Gifu genome v1.2.
AAACCCAGCAACCACTTGTGTCACAAACATCAATTTCTGCTAATATTTCATTATTATCTACTATTGTTTAGTACCACGTA AGCTACATTTGGTGACCAATTAAGTCGTTGCTCTTTCGCTTTCTGTATCTGTCTGATTCAAGCTCCCACCTGAACCGCTT GTTCTTGCTTTTCAACTCCATCTCAAGCAACCCCATTTTTTATTATCTTCTTCTTAAGCTATTTGTCATGGAGGGTATTG TGTTATTCCCCTTGTTTCTCTCCATTCACCTTCAGCTCAGAAGTGGGTCGTTGAATTTGGGTTGAATTTTCTGGTATTTG ATATGGTGGCTTCAGAAAGATTGGAACTTATTGCATTTCGGTGGTGGGTTGTTCTACTGTTACTGAGTCCTGTGGCGGGT CTCAGACCCTTAAGAGAGAGAAATCGATCATGGGGTGATGAGGTTTGCTTCAGAATTTATTTGTCTTCAATTTCCTTGTT TTATAGTAGTATATTGACTTTAGTTAATTTGAACATTTTTTCAATAGTAGTGTCACACCAGTAATTAGTAAATGGAGATT GGCAAGCTAAAAATGTATTTTCCGAATCCTTATTGAAAGTAGCTTAAGTACATTGGTCATTTGCAACAAGTAATCATATT TGGCTTTTACTGATTTTGTTAATGACTATCACTTGATTGTAAGACATGAGCCTTGAGCTTTAATGCTATTTCACTTGCCC GATAGCCGATACCTGGCTTGTGATTAAAAATTACTTGAATAGATATATGGTGATTGATTGTTATGATTGGTGCAAATTTT AACTGAAGGCAACTCATATATATGCATGTTGTTGACATTGCTTCTTTCAGTGGCAGTTTACAAGAAAGGAAGAGAGTGAC ATAGGTCCATTTTCACAATGGAACATAACGGGAACTTACAAAGGTTTGTACTGTTTTATGACCGTAGTGCATGTGTTTGC TGTTATCTTTGAGTTGTAGCTTAGGTCTGTTGTTCAAATGTTTAGTGTAAGCAGTTGAACAGTTGAAGTATTGCTGAGCT CATGCTTATCTCTCAAGAGGATTTATGAAAATCAGAGCTAACACAATGTTATTGCTTTGGAATATTATGACTTGACTTTC TTTCTGTATTTTTTTATTTTTGCGAATGAGGTCATGCTCTAATTGGCGGTTATTCTATTAGGACTAATTGCTGTGCTTCT TACCTTTTTACTCAAGCTTCTTACCTCTGTGCTTAAGTTTTGTGTGTTCTTAATCAGCTACCATTAGATAGAGACTATAA TGGCTAAGGAGCCAGCATCCCAGTGTAAACTAGGATGCATGCTTCCAAGAATAAACTAAATGAACTTAAGGTGTTTGGAC AAATCATGTAATTCTACTATTCTAGAAGTAATTTTGTGCATTTTACGGAAATATGCTTCATTTCTAAATGTATGATATAT TTTCAACAAAATTTGTTCATTAGTTATTGTGAAATGAGTTTGTAATGTTTGTATCTTTGCCTTTTCAAATACAGGGACTT GGAACTTTTTAGATGCCACAAATGGCTCTTCCAGATTCCCAGACATCCAAAAAACAAATGGCAATTCCGTTATTGAATTA GTTAGTACACCCACAAAGATAACCGGAGTACATTATGTCCATGTGAGATTTGAACTTTGTAGCTAATTTCAGAGTAATAA ACTTTCAGATGTCATATAGTTTCTTATTAGTACTATTAGAGTTTAAAATTTTATTTATATATTCATGTGAGTATTTGTTG GAAATATGAACGGATTTTGTGGTTGCTTAAAGTTGAAGTTCTGATAAACTTGTCCTTTGACATGTTGAAGAATTATGCTA AATATCTTACTCCTTGCGACAAATACTATTTCATTCTCAATGTAGTTATCACTCTTGCCTCATTTAAGGCTTCTCTGAAC TGTAGTTTCTGCCATTGAGATTTCAGTATGTGTATTTTGTATTAGGTTGGTCTTCTGTTGAATGCTTTTATTTTAGATAC CATAGACCAAATAATTTACGTTTTCATCTCACAATAGAATAATAATATTGTAATATTAGTGAACGCTTTTAGGCTTTCAG TCATGAAACCCTTATTGCAGTTTCAGTAAAATAATTCCTATTATTCTGTAAAAATTTATTCCTCTATTTCATACTTTTTT TGTTCAGGGGGTAGTTATATTCCATGATGTGTTTGACAATGGATACAATGTTGGCGGTGCTCAAATCAGAGTAGAAGGTG TATATATATGGCCTTTTAGACAGCTTCGAATGGTAGCCAACAGGTAAATTTCATGGATATCATCAAGATGATGCCCAGAT CAAGATTATTGAGCTGTTGGCATGCGTTATCATGAATTCATGATCGTTTAAAATTTAACCTTATTTGGCATTTCATCTTG AATCAGTTCTTTAATGCTCGGTTGTACTTTGATTTAATTGTGTTTATTTGATAGTCAAATTCTGTTTGCAATGGAATACT GATACTTCCTTAGAGCAAAGCCTACCATGTGCTCAAGAATTTATTTGGTTTCCTCATGTTGCAGTGGAAAAGGAGAGTTC AATCAGGATGAGGATTATATTTTATCTAATCCATATCATCTGGTAATAGTCTTTCTTGATGTATCCTTGAGCAATCACAT CTTATACTCGGATATGATTATATTGTTTACAATAATCTGAATAACACATTAATTTTGGTGATCAATTTTTGTTCATGTTG TTAAACATGTTTATTAATGGTCGTAATTGCTCTTTCCCTGAGCCCTATTGACTTTCAGTTAGAATGAATACCATCTATCC AAACTTGCTAATAATTTTCATGGGGTTTATTTTACTTAGCTCCATAAGCTTCCCGACTAAAGCTGAATTGCTGATACTTG CTTTATTGGTTTGATCATACTTTCTGTAAAACATTTGAAAATATGTTGTAATACATAATATTCTGTAATTTGTTTTTTAT CAATTGAAGTGAAATCTTACAGCTTTAAATCTTTTAAGGCACCATTTATATTTTGTTTTCTCTTTTGATTGTTGTTTTAT TTACCCTTTTTCAATATGGAGAATTCTTTGTCCTCCAAATTACTGGTGTTTCTTTCCTCTGTCTTAACAAATTTCTTCTT TTATTTTTTAAATAGTAAGTATTCAGAATACTTATTTGCCTTCAAATATGGCTTTTTGTACACAGCTTGGAGTTTTCTCA TCTCAAGTACTGCAAGATTCTTCACGAGATAAGAATTGGAGAAGAAAACATTGTAATTTGTTTAACACACCTGTATAATT TGAAGTTTGAAGGGATCCCCTGCCCCCTTTTCTTGTAGTGGTTGTTTTACTATTTGCTATTTGTTTCCCTACTGCAGCTC TGATCCGTGACATGGATAAACATTGTAATATTGAAATTGCTGCAAAGGTTTCACACTTGCCATCATCAAAAGATGGTAAT TGTGTTCTCCCAACATATGAATACTTTCTGTTCCTTTAATTTTTCTCTGCCTCAACCAACCATTAAACGTTTCAATGGCT TCTTTTTGTTGCTTTTTTCATTCTATAGAGGAGTGTGTCTCAACGATATAAAACGGATTGGAGAACTCTCCTACACTAAT AATTTTCTCTTTTTTGTATTCTTTTGTATATATGGTGTAAAGGGATTACGGAACTGTTGAAAACATTTATATCACCAATT GCTGATAGTATAATATTATGAATGGTAGAAGAACTATATATGCATTAACTTGAGTTTTCATCATTTTTATATTCATGGAG AGCATTCCGGTTGATGATGAAAAATATTATATTTTTCCCTTGATTTATAAAATTGTTATATATTTTTTTGCAGAAGGCGA GCATGATTCTTTTCATCTAGAAGGATTAATGGAGAGTCCCTCAGCGGATGACAGTGGGGACTGCTTCTCACCGTTACTGT TAAATGCAACTTCTGTTAAAATTGAGGTCTACTACAACAAAGCAGTGAACTATACCTTGATGGTCACTTTTGTATCCTTC AATCATGAAAATTCTTACAGCTTTATGGCTCTTTTATTTTCCACTACGGTGTGAGCTCCTTAATGTACAGATACCAGATC TCTTTCCTGCAAGTTCTTCTACTGATTCGTCAAATGGAGCATAGCAGCACTCAATCTGTAAGACTGGAATTTTATTGGAA ATTTCACTTTTCATATATTTCATGAATGGAATTAATATAAAAAAAAATTGATATTTGTTCAGGGTGCCAACTGCTAAAGA TTATTTGAAAGTTCACATAATTGATTTTGTAATATCACAATAATTTATGATTATGGAAATGAATATGATTCAGAAATACC TTTACAGGGGGCGGCTAAGGTTTCAATTTTAATGATCGGCCAGCAAGCGATAATGGATGCCTATCTTTGCCTTTTACACC TGACTGCAGGAATATTAGTTGGTAAGTTAGAAAATTTACTTGAGGTTGCCCTACAATCTGTTCTCTTTCTACCCTTTCTT ATATATCTCTGTTATGTTGTAGACGCTGAGGTACCAATTTTAGGGTAAGATAAATATATCTAAGGATCCTTTTTAATTGG AAAAGGGCCTCAAGTTTTTTTCCCTGTCCTTAATTTTGTTCACTTAACCAGCAGGCTTTAACAATTTCTTATCTTTGCAT TGTGAGTACGCGTTGGAATGAGCATGCTAAGTGCTAACTGCCAACACACTTAAACTCAAAAGCAGATGAATTGTCCATAA AAAGAGGATGACCAATGGAAATTTATACCTGGATGGTCAACCTGGACACTCTGCCTGCACTTTTGAAACTACATTTGGAC CTTTTCACAAAATCTTATCACCTGTACTTCAATCCCTAAAATGACTCTTATTCTATTCTAGTCCAGACCTTACAATGTAG AACATTTAATCTGTAGAGCACACAAGAAATTTTTAGTATTCAGGTATTCAAATCTGTTCCATGTCAAAAGATCATTTTTT TCAGCAGGGGTCTCATATCATGGAAAGGTTATTAATATGTGTGTCAAAATCGCAATGTGGTGTTTATCAGTGTTTCAATG GATGAGACTTCAGGGATTAAATATCTCATTTAGTAATAGGAAGATTGTGAGCTGAATACTTGTTGATGTTTCTGTGCAGA ATCCTTGTTTAATGCTTTTGCAACTGCTGCATTTTTCAAGTTTGTCGTCTTCTCAATATTTGAAATGAGATATCTCCTTG CTATTTGGAAGGCAAATAGGCCTTTAAGTCATGGGGAAGGTTGGGAGACAATGAGGCGTGAACTTTCAGTTTTATACAGT CGATTCTGTAAGTTGTCATTTAGAATTGAATTTTCTTTTCAAATAATTGTGTGATCTTACTTATACCAACATAGGTTTGC CTTGGTGTCATTGGCTCCATAGGACCCATGATCAAGTTTTTTCTGACCTGCTGAGCTTTGAGCTAAACTACTTTTATTTC TGTATTGCTGATTAAGATCAATTCCAGCTTTTAAGTTTATTTTTGTTATCTTAAAAAGAAAAACTATGACGCTTACTTGA AAATAGTGTGGATAATTGAAAATGTAATAACTTCATGTTAATTGTTATTTGAATTTCTCTCTAAAATGCATTTGTATTAG ACTTATTAGCTATAAAATTCACATTTTTTTACTATATTTCCTTGTTTCAACTACTCTTCATAAAACATGTATACTTAAAC CGTGCATTTGCTGAGGGTCATCATGTTTAAAAATAAAAGTTACCTAGTGGTACATATCTCATATGAGACCAAAAAAATTG TTCCTTAGGTTCTTAGTGTTTCCACATCCATATATTTTCTAAAACACCATGTTGAAGCATACTGTAGAACTGTAGCTATA TGTTTTCTGTTGTTTTACTTATGAAAACAATTCCTTGTAAGAAGAGGGGCTCAAATTTATCAGTTTAACTTCTTTTGCAG ATGGGATCCTGTTGGGAGGTATTCTACTCATGTATGAGTTCCATCACTATTTGAAGACTATTCTTCTTCTTATGTACTCC TTTTGGGTACCTCAGATAATCACCAATGTTATTCGTGATTCACGCAAACCATTGCATCCTCATTATATATTAGGGATAAC TGTTACTCGGCTAGCAATACCATTATACATTTTTGGTTGCCCTAACAACTTCATGCGCATAGAACCTGACAAGAGCTGGT GTGTTTGTTTGACTGTATTTATTGGGTTTCAAGCTGCAATTCTTCTACTTCAGCACTATCTGGGGTCGCGTTGGTTCATT CCTCGTCAGGTTTGACCTTCCTGTCTTCTTAATACTTTATGACCACAACCACATTCAGAATCCTAAAATCTAATGGCCTT TAACAAAGCACAATAACTTCTTCACTTGATTCATGTAGCCAACTCCATCTAGTGGGAAGAGGCTATTTTGTTATTATGTA TTTTAGTTGTAATTCAGGTCCCAATCATTTCAAGCATTTCACACACATCCTACTTGTATGGGCTCTACAGCTCTACTCTC ATTTTTGGTAACTTTGCTCCAAAGTTTTCATTACCTCCTTTTTCTTCATTTGATCACAAACATGATTGTGTATTTTTGGC TAGGGATGCATAATAAGATTGCTATCCTAGTTATTTAGGATTCTGAACTGTGGTCTGTGGATCAATGCCTTAGGTTTTCT AACTGAATTTAAATCAGGATCCAGCATTTTTTGACTGAACTTGCGCGAATGTTTCTCAATCAGTCTAAGTTATCTTCTTG ATTTGCAGATTCTACCCGAGAAATACTGCTATTATAGGAGGTTTGATCAGGATACAAGACATGCTATGGACTGTGTTATT TGCATGACAGCCATTGATCTTTCCCAAGGAACTAATGATTGCATGGTATGTGAATATAAATATATAACCTTTGTTTATTG GAGTCAAACTTTACAATCTGATGTAAGTCTAATGTCTAGACTCTTAATTACACAGGTAACACCTTGTGATCATTTCTTCC ATTCTGGTTGTTTGCAAAGATGGATGGATATAAAGATGGAGTGCCCAACTTGCCGTCGCACTTTACCACCTGCTTAGAGA GATTTTTTTCACTTTTTATGCCAATAGGACCTAACTAACCCTGCTCAACTTGGTAGTTTTAGTAATATGCTTCACTTTTT ATTGTCATCCTTTTTGTTGTGATGTTGAGCACCAAGTCTAAGGTTGTCTTCTCATAGAAATTGTAATTTCATTTTTCCAC TCCACATTATTTCAGACGCTGAGAATATTGTTTTTGTACATAAGTTGGAAAGGCAATGAAGATAATTGTTTCTTTTTTTA ATACAAAGTATATTGTTATTTTTCCTTTGTGATTGTCCAAAATCTGAAATTAGCACTA
CDS sequence (LotjaGi3g1v0445700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGCTTCAGAAAGATTGGAACTTATTGCATTTCGGTGGTGGGTTGTTCTACTGTTACTGAGTCCTGTGGCGGGTCT CAGACCCTTAAGAGAGAGAAATCGATCATGGGGTGATGAGTGGCAGTTTACAAGAAAGGAAGAGAGTGACATAGGTCCAT TTTCACAATGGAACATAACGGGAACTTACAAAGGGACTTGGAACTTTTTAGATGCCACAAATGGCTCTTCCAGATTCCCA GACATCCAAAAAACAAATGGCAATTCCGTTATTGAATTAGTTAGTACACCCACAAAGATAACCGGAGTACATTATGTCCA TGGGGTAGTTATATTCCATGATGTGTTTGACAATGGATACAATGTTGGCGGTGCTCAAATCAGAGTAGAAGGTGTATATA TATGGCCTTTTAGACAGCTTCGAATGGTAGCCAACAGTGGAAAAGGAGAGTTCAATCAGGATGAGGATTATATTTTATCT AATCCATATCATCTGCTTGGAGTTTTCTCATCTCAAGTACTGCAAGATTCTTCACGAGATAAGAATTGGAGAAGAAAACA TTCTCTGATCCGTGACATGGATAAACATTGTAATATTGAAATTGCTGCAAAGGTTTCACACTTGCCATCATCAAAAGATG AAGGCGAGCATGATTCTTTTCATCTAGAAGGATTAATGGAGAGTCCCTCAGCGGATGACAGTGGGGACTGCTTCTCACCG TTACTGTTAAATGCAACTTCTGTTAAAATTGAGGTCTACTACAACAAAGCAGTGAACTATACCTTGATGGTCACTTTTAT CTCTTTCCTGCAAGTTCTTCTACTGATTCGTCAAATGGAGCATAGCAGCACTCAATCTGGGGCGGCTAAGGTTTCAATTT TAATGATCGGCCAGCAAGCGATAATGGATGCCTATCTTTGCCTTTTACACCTGACTGCAGGAATATTAGTTGAATCCTTG TTTAATGCTTTTGCAACTGCTGCATTTTTCAAGTTTGTCGTCTTCTCAATATTTGAAATGAGATATCTCCTTGCTATTTG GAAGGCAAATAGGCCTTTAAGTCATGGGGAAGGTTGGGAGACAATGAGGCGTGAACTTTCAGTTTTATACAGTCGATTCT ATGGGATCCTGTTGGGAGGTATTCTACTCATGTATGAGTTCCATCACTATTTGAAGACTATTCTTCTTCTTATGTACTCC TTTTGGGTACCTCAGATAATCACCAATGTTATTCGTGATTCACGCAAACCATTGCATCCTCATTATATATTAGGGATAAC TGTTACTCGGCTAGCAATACCATTATACATTTTTGGTTGCCCTAACAACTTCATGCGCATAGAACCTGACAAGAGCTGGT GTGTTTGTTTGACTGTATTTATTGGGTTTCAAGCTGCAATTCTTCTACTTCAGCACTATCTGGGGTCGCGTTGGTTCATT CCTCGTCAGATTCTACCCGAGAAATACTGCTATTATAGGAGGTTTGATCAGGATACAAGACATGCTATGGACTGTGTTAT TTGCATGACAGCCATTGATCTTTCCCAAGGAACTAATGATTGCATGGTAACACCTTGTGATCATTTCTTCCATTCTGGTT GTTTGCAAAGATGGATGGATATAAAGATGGAGTGCCCAACTTGCCGTCGCACTTTACCACCTGCTTAG
Protein sequence (LotjaGi3g1v0445700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVASERLELIAFRWWVVLLLLSPVAGLRPLRERNRSWGDEWQFTRKEESDIGPFSQWNITGTYKGTWNFLDATNGSSRFP DIQKTNGNSVIELVSTPTKITGVHYVHGVVIFHDVFDNGYNVGGAQIRVEGVYIWPFRQLRMVANSGKGEFNQDEDYILS NPYHLLGVFSSQVLQDSSRDKNWRRKHSLIRDMDKHCNIEIAAKVSHLPSSKDEGEHDSFHLEGLMESPSADDSGDCFSP LLLNATSVKIEVYYNKAVNYTLMVTFISFLQVLLLIRQMEHSSTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESL FNAFATAAFFKFVVFSIFEMRYLLAIWKANRPLSHGEGWETMRRELSVLYSRFYGILLGGILLMYEFHHYLKTILLLMYS FWVPQIITNVIRDSRKPLHPHYILGITVTRLAIPLYIFGCPNNFMRIEPDKSWCVCLTVFIGFQAAILLLQHYLGSRWFI PRQILPEKYCYYRRFDQDTRHAMDCVICMTAIDLSQGTNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRTLPPA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 8 | 8 | - | – | |
| Phobius | 9 | 21 | 13 | - | – | |
| TMHMM | 10 | 27 | 18 | - | – | |
| Phobius | 22 | 26 | 5 | - | – | |
| Phobius | 27 | 256 | 230 | - | – | |
| PANTHER | 35 | 555 | 521 | 0.0 | – | |
| PANTHER | 35 | 555 | 521 | 0.0 | – | |
| Phobius | 257 | 276 | 20 | - | – | |
| TMHMM | 257 | 276 | 20 | - | – | |
| Phobius | 277 | 287 | 11 | - | – | |
| Phobius | 288 | 311 | 24 | - | – | |
| Phobius | 312 | 322 | 11 | - | – | |
| TMHMM | 323 | 345 | 23 | - | – | |
| Phobius | 323 | 345 | 23 | - | – | |
| Phobius | 346 | 365 | 20 | - | – | |
| Phobius | 366 | 385 | 20 | - | – | |
| TMHMM | 366 | 388 | 23 | - | – | |
| Phobius | 386 | 390 | 5 | - | – | |
| Phobius | 391 | 410 | 20 | - | – | |
| Phobius | 411 | 421 | 11 | - | – | |
| TMHMM | 418 | 440 | 23 | - | – | |
| Phobius | 422 | 439 | 18 | - | – | |
| Phobius | 440 | 450 | 11 | - | – | |
| Phobius | 451 | 470 | 20 | - | – | |
| TMHMM | 453 | 475 | 23 | - | – | |
| Phobius | 471 | 555 | 85 | - | – | |
| SUPERFAMILY | 485 | 553 | 69 | 1.17E-13 | – | |
| Gene3D | 492 | 555 | 64 | 6.8E-14 | ||
| Pfam | 504 | 549 | 46 | 1.8E-9 | ||
| SMART | 504 | 549 | 46 | 0.0031 | ||
| SMART | 505 | 548 | 44 | 8.7E-7 | ||
| ProSiteProfiles | 505 | 549 | 45 | 12.209 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi3g1v0445700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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