Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi3g1v0446400.7

Overview

Field Value
Gene ID LotjaGi3g1v0446400
Transcript ID LotjaGi3g1v0446400.7
Related isoforms 8
Lotus japonicus genome version Gifu v1.2
Description Aminotransferase-related family protein; TAIR: AT5G53970.1 Tyrosine transaminase family protein; Swiss-Prot: sp|Q9FN30|TAT2_ARATH Probable aminotransferase TAT2; TrEMBL-Plants: tr|I1LUI0|I1LUI0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0446400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:85968794..85973991) extracted from Lotus japonicus Gifu genome v1.2.

TTGTCTTTCACGATTGCCATTTCTTTCTTTTTCTTTGGTACATATATAGGATATAGCTCCTCTCCTTCAGTTCATAACAC TTATATTGGTTGACCAATCTCAGATAGAATAGAGCAAATGGAGAACGGAAGTGAGAAATGGAATTTCCAAGGGAACAAAG GGCTCAATGCTTCAGCCATTTCAGTGAGAGGGGTCTATAACATGCTCATGGATAGCATCAGTAACAATGAAAACAACAAC AACAAACCTCTGGTTCGTCTCTGTCGTGTTGATCCAACTGATAATCCACTGTTTCGGACTGCCCCTGTTGCTCCTGATGC TATTGCAACTGCTGCTCACTCCTTCAACTTCAACTGTTATCCTCCCACCGTTGGCTTACCTGATGCAAAAAGGTATGTTT CCCTCATCAACTAGATAAAAAGGCTATTAATTTATCATGATGTTAAAAAGAAAGTAATAGAAATAGGTAGAAAGGGAAAT ATGATTTCTATAATCCATTGTTGACATTGGTATTTGGTAATCTTATAACCATTAAACCATGTGTTCTTCGTGAATGAAAT TGCTCGAATGTCCATGCTTTTAGTGGTGGTGCACGACCTTGACTGACTTAGTTTGCACGGCAAGAGTGTACGTGTAAAAG ATACTCCGATGCTCAAGTCAGTGAGAGAGCAAAGAGAAAATCTCGGAGCCTAAGAAGAACTCAAAGTTTTGCATAAAGTT CAACGTGTCTTGTAAATGAATGATTATACCGAGATTTATAGACTCGGAGTCCGTCGTAACTGTCTCTGCAAGTTGTCAGG TAGTCTTAAGGAAGGATTCCCGAAATTTTGCTGCCCCTGGTCAGCCTTATGTAATCGTTAGTAAATATGTCGCCGTGAGG CCGACCCACCCTTATGCTGCTCTCTTAGTTGCGAGATTTTTTGGCCGAATGTGATGCTATTGAGCTTTTCGGTCTGGCCA GAACAATATGAATATGCATTTGTAATTTCTGGAGCCAAAAATCAATTTAACATGTTTATACATGATGATTTGGTAACATA TTGCTATTTCCTAAACAGGGCTGTTGCAAATTATCTCTCTTCTGATATTCCATACCAGTTATCACCAGACAATGTTTTTC TCACCGTTGGGGGCACACAAGCTATAGATATAATCTTACCTGCCCTTGCACGTTCTGGTACCAACATTCTCCTTCCAAGA CCAGGGTACCCTCAGTATGATGCTCGCGCCGCTTGTTGTCTCCTTGAGGTTCGGTACTTTGATCTCTTGCCTGAGAGAGG ATGGGAGGTTGATCTTGATTCCCTTGAAGCTCTAGCAGATGAGAACACTGTGGCCATGGTCATCATCAATCCTAGCAATC CATGTGGGAATGTGTTCACATCCCAGCATTTAAAAAAGGTACATATAACATGTTTGGATGAACTTCTATTTCCTCATAAC CGATTCTGATATTCAGAAACTACTTAAGTACTTATAGAAAACTTTGTCTGATAATTCATTCTCATTTTAGAATCAATTAA AGAAAGATTTCCAAACATGCTAATTATAGTCTTAAACTTCATTGTTTCGGAGTAGGAAACAATATGTGACCATTTTTCAG GACTCTTGTAGGTTGCTGAGACTGCAAGGAAACTTGGAATCTGTGTAATTTCTGATGAAGTTTATGGCCACGTAGCTTTT GGAAACAATCCATTTGTGCCAATGGGAGTGTTTGCACAAATAGTGCCAGTTATCACAATTGGGTCCTTATCAAAAAGATG GTTAGTTCCTGGTTGGAGAATTGGTTGGATAGCCACATGTGACCCCCAAGGAATTTTTGAAAAAACCGGGGTTAGTGCTT TTTTACCTGTTGTTTTCCATCTTTTTGTCCTTATAGTTATTACTAGTATATAAGGATTTTATATTTTCAAGATCAATTGC AGTAAAGATTTTTCTTAATTAACTTAGAAAACCTGATATTTAAATGACTGTGCGATTGTTTGCTTTCTTTATCAGATCAA GACAAATATCATCAGCTATTTGGAGATTACTTCTGACCCTCCAACCTTCATGCAGGTAACCAATGAAAGCTATATAGCAT AAGCAAAACAAAAGAGTAACAGAAAAAAAATTGTACATACATTCAGAATTTAATACATGTAGGTTTATATATGCTTGTTT CCTTGCTTTATCATTTTGTTTTCCCTTCTAAAACAAAAATTACAGCAAGTTAGGCTTGCAGGCAGCAATACCTCAAATCC TTGAGAGAACAGATGATGATTTCCATTTAAAAAATCTTAATATAATGAGAGAGGCTGCAAACAAATTCTATGATGTATGC AAGGAGATCCCTTGCTTGACATGCCCTCACAAACCAGAAGGAGCCATGGCTGCGATGGTAAGTTGGATAAAGAGTTTTGA GGTTTTCATCATGTTATAAATTTAACATGGAGTCATCTTATTACGCATGAATCAATTAACAGTAAATTGAATGAATCAGG TGAAGATTAACTTCTCACAAGTTAAGGACATTGTTGATGATGTGGATTTCTGTGTCAAGCTGGCCAAAGAGGAATCTGTA CTTCTTCTTCCTGGTAAGAATTCAATTGATAAATAGAATAAAGTCTTGTATGATGAGAGTTTCTCTTTATTGATTTTATT ATACTTGCTTGCAGGTGTTACTGTTGGACTAAAGAATTGGCTTCGGATTAGTCTTGCTGTTGACCCTTCTGAACTTGAAG AGGGTCTTAGCAGGATAAAAGCATTCAGCCTTCGGTATGCCAAGATGTCATAAATCGTGTCACATGGGAGGCTTTGTTGA ATACTAGGTTTATATATCCCATTGAGACCATCTTTATGGCAAAGTATATGTCTGAAAATAATTCTATTTTAGGTGCTTAA ACAGTTTAGTTAAGGACTTGTGGCAATAAGCTCTTGTCACAAAAGAGTCTATTCATAAGCTAATTTGAGAAGCTTATTCA AATAAGTTAAAAATAAGATATGAATAAACATAAACTAATTCGAATAGTTTATGAAAAATAAGTTCAAAATAGCACCGTGG ACGAAATACTGTCTTGAAAGCAAAATTTCGGCAGACTCTGGTGCAATCTAGTGTCAGGTTTGCTCCCCAAGGTTAACACA TTCGCATGCAAGGTACTGTGCACTCAGAAATTACACATGTTAGAGTCTCTACAACAATGCTCAAAATTTGGATAGAGAGA AAGAGGGAGGAAGCTAGAAAAACCCATATATCCATTTCATAAAAAAATAGTGTTTTACATCCTTTTATCTCACAAATGTT GTGCCTGCCCTGTTCTCTTTTTCTAGACCTCACGGCACCATCCTTGTTTAATACACATGTAAATTTTTTTTTATCAGCAA ATCATTAACATAAGTAAATGACTTTGAATGGATATTAAGTTATTAACTCAAGTAAATGAGGAAATCATTGACCAAAAACA AAAAAGTAAATGAGCAAATCAGTTTTTTTTGTTTGTCCTTTGGCCACGGTCTCCACGGGGAAAGGGACGCCACGTGACCA ATCTGGCTCGGGATACGGTAGTGATGTCCCTGTCCACAACGGTATTATTTTTTACCTCAGAGGGGATCGAACCCGGGCCA GAAGCCTAGGCGAAATCCCTTAAAGAAATGCACATTCCCCGCTTATGTCACCCCTTGTGGTTAGCAAATCAGTTTTCAAT ACTCAAAACGGTATGATTTTTAAAACAAATAACTGTTTTATTTTGGTTGAGTAACTAACAGACAGAGAATTGAAGGCTGA AATAAAAACGCTTGAATGTCATTAATCTTCATATTTTCCACGATTGTCATTTTATTGTTTGGAACATAGCTCCTCTGCTT CAGTTCATAACACTTGTATTGGTTGACTAATCTCAGACTCAGATAGACCAGAGCAAATGGAGAACGGTAGTGAGAAGTGG AATTTCCAAGGGAACAAAGGGCTCAATGCTTCAGCCATCTCTGTGAGAGGGGTGTATAACATGCTCATGGATAGCATCAG CAACAATGAAAACAACAACAACAAACCTCTGGTTCGTCTCTGTCGTGTAGATCCCACCGATAATCCATTGTTTCGGACAG CCCCTGTTGCTACTGATGCTGTTGCAACTGCTGCTAACTCCTTCAACTTCTACGGTTACCCTCCCACCGCTGGCTTACCT GATGCAAAGAGGTTTGTTTCTCTAGATAAAAATGCTATTAATTTATCAAGTTGTAATAGTAGTTGGTAATAAAATGATAG TGATTAGTAAGAGCATATACGACGAGAGAATTAGTTACGACTGACTATAGTGGATACACTTGTTTAAAAAATATAGAAAT AGTAATAGGTGGAAAGGGGCATGTGATTTCTATAATCATTACTGACATTGGTAATTTGGTAATCTTATAACACATGGGTT ATTTATGAAATGAGATTGCTCGAATAGCTCCGGGTGGTGGTGCACGATCTTGACTAACTTAGCTTGCATGCGGGGTGTAC CTGTAGAAGACATTCTGTCGCTCAAGTTAGTCAGAGAGCAAAGAGAGAATCTTAGAGTCTAAGAAAAACTCAAAGCCTTG CATAAGACTGTCGTAACGGTCTTTCCAAGTCATTAGGAAACCTTATGGAAATATTCCCAAGGCCATAGCCACCTCTTGAC AGTTGTGTGATTGTCAGTAAATATGTCACCAGGAGGCCGATTGACCTTAGTTGGGACGGGACATTCATTCACCGAGTCAT CTTACTCACTTAGTTGCAAGAACTTTTGGGCTTGGCCGGAACAACATGAATATGCATTTGTAATTTCTGGAGCTAAAAAT CAATTGAACATGTTTATACATGATGATCTGGTAATATATCACCATTTCCTGAACAGGGCTATTGCAAATTATCTCTCATC TGATCTTCCATACCAGTTATCACCAGACAATGTTTCTCTCACCCTTGGTGGCACACAAGCTATAGATATAATCTTACCTG CCCTCGCACGTCCTGGTGCCAACATTCTCCTTTCAAGACCAGGGTACCCTCAATATGATGCTCGCGCCGCTTGTTGTCTC CTTGAGGTTCGGTACTTTGATCTCTTGCCTGAGAGAGGATGGGAGGTTGACCTTGATTCCCTTGAAGCTGTAGCAGATGA GAACACTGTGGCCATGGTCATCATCAATCCTAGCAATCCATGTGGGAATGTGTTCACGTCCCAGCATTTAAAAAAGGT
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0446400.7) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGAACGGAAGTGAGAAATGGAATTTCCAAGGGAACAAAGGGCTCAATGCTTCAGCCATTTCAGTGAGAGGGGTCTA TAACATGCTCATGGATAGCATCAGTAACAATGAAAACAACAACAACAAACCTCTGGTTCGTCTCTGTCGTGTTGATCCAA CTGATAATCCACTGTTTCGGACTGCCCCTGTTGCTCCTGATGCTATTGCAACTGCTGCTCACTCCTTCAACTTCAACTGT TATCCTCCCACCGTTGGCTTACCTGATGCAAAAAGGGCTGTTGCAAATTATCTCTCTTCTGATATTCCATACCAGTTATC ACCAGACAATGTTTTTCTCACCGTTGGGGGCACACAAGCTATAGATATAATCTTACCTGCCCTTGCACGTTCTGGTACCA ACATTCTCCTTCCAAGACCAGGGTACCCTCAGTATGATGCTCGCGCCGCTTGTTGTCTCCTTGAGGTTCGGTACTTTGAT CTCTTGCCTGAGAGAGGATGGGAGGTTGATCTTGATTCCCTTGAAGCTCTAGCAGATGAGAACACTGTGGCCATGGTCAT CATCAATCCTAGCAATCCATGTGGGAATGTGTTCACATCCCAGCATTTAAAAAAGGTTGCTGAGACTGCAAGGAAACTTG GAATCTGTGTAATTTCTGATGAAGTTTATGGCCACGTAGCTTTTGGAAACAATCCATTTGTGCCAATGGGAGTGTTTGCA CAAATAGTGCCAGTTATCACAATTGGGTCCTTATCAAAAAGATGGTTAGTTCCTGGTTGGAGAATTGGTTGGATAGCCAC ATGTGACCCCCAAGGAATTTTTGAAAAAACCGGGATCAAGACAAATATCATCAGCTATTTGGAGATTACTTCTGACCCTC CAACCTTCATGCAGGCAGCAATACCTCAAATCCTTGAGAGAACAGATGATGATTTCCATTTAAAAAATCTTAATATAATG AGAGAGGCTGCAAACAAATTCTATGATGTATGCAAGGAGATCCCTTGCTTGACATGCCCTCACAAACCAGAAGGAGCCAT GGCTGCGATGGTGAAGATTAACTTCTCACAAGTTAAGGACATTGTTGATGATGTGGATTTCTGTGTCAAGCTGGCCAAAG AGGAATCTGTACTTCTTCTTCCTGGTGTTACTGTTGGACTAAAGAATTGGCTTCGGATTAGTCTTGCTGTTGACCCTTCT GAACTTGAAGAGGGTCTTAGCAGGATAAAAGCATTCAGCCTTCGGTATGCCAAGATGTCATAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0446400.7) extracted from Lotus japonicus Gifu v1.2 Proteins.

MENGSEKWNFQGNKGLNASAISVRGVYNMLMDSISNNENNNNKPLVRLCRVDPTDNPLFRTAPVAPDAIATAAHSFNFNC YPPTVGLPDAKRAVANYLSSDIPYQLSPDNVFLTVGGTQAIDIILPALARSGTNILLPRPGYPQYDARAACCLLEVRYFD LLPERGWEVDLDSLEALADENTVAMVIINPSNPCGNVFTSQHLKKVAETARKLGICVISDEVYGHVAFGNNPFVPMGVFA QIVPVITIGSLSKRWLVPGWRIGWIATCDPQGIFEKTGIKTNIISYLEITSDPPTFMQAAIPQILERTDDDFHLKNLNIM REAANKFYDVCKEIPCLTCPHKPEGAMAAMVKINFSQVKDIVDDVDFCVKLAKEESVLLLPGVTVGLKNWLRISLAVDPS ELEEGLSRIKAFSLRYAKMS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PIRSF
PIRSF000517
1 420 420 1.1E-176
IPR005958
PANTHER
PTHR45744
6 419 414 1.7E-204 –
PANTHER
PTHR45744:SF11
6 419 414 1.7E-204 –
TIGRFAM
TIGR01265
8 415 408 3.4E-157
IPR005958
SUPERFAMILY
SSF53383
39 412 374 1.34E-81
IPR015424
Gene3D
G3DSA:3.90.1150.10
48 412 365 2.0E-111
IPR015422
CDD
cd00609
56 411 356 1.20838E-81 –
Pfam
PF00155
63 409 347 3.4E-56
IPR004839
Gene3D
G3DSA:3.40.640.10
63 308 246 2.0E-111
IPR015421
ProSitePatterns
PS00105
250 263 14 -
IPR004838

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0006520
Biological process Cellular amino acid metabolic process The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells.
Subterm of
GO:0008483
Molecular function Transaminase activity Catalysis of the transfer of an amino group to an acceptor, usually a 2-oxo acid.
Subterm of
GO:0009058
Biological process Biosynthetic process The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
Subterm of
GO:0030170
Molecular function Pyridoxal phosphate binding Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0446400.7, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…