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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0454900 |
| Transcript ID | LotjaGi3g1v0454900.3 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT2G20710.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9SKU6|PP166_ARATH Pentatricopeptide repeat-containing protein At2g20710, mitochondrial; TrEMBL-Plants: tr|A0A072TQ66|A0A072TQ66_MEDTR PPR containing plant protein; Found in the gene: LotjaGi3g1v0454900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:86820454..86823921) extracted from Lotus japonicus Gifu genome v1.2.
CTTAAACCCTAGCCTGGGTTTTACTTTCCCAATTTCAGCAAAATGATGAATCGCATTGCATCAAAATGGAACCTTACCAA CACACTTCGTTTCTTCTCTTCTTCTTCTTCATCTTCTCCAACCGATTCCCTCTTCTTACGAATTTCCAGATCCGGCGACC GTGCCATCCCCATGACTCCTCTCCTCAATCAATGGCTTCAAGAGGGCAAACTCATCAACTACTCTGAGCTTCAATTTTTC ATCAAGCAACTCAGAGCCTCTCGTCGCTTCAATCATGCTCTTCAGGTTCATAAACATTCCAATTTCAATTTCGTATGTGA TTAGTTTAATGCAATTTGGTATGATAATGTTTAAGAATTGGGACAATGCTATAAGTTGTGTACTCATTATTGGATTGTGG TTTTGCTGGTGCCAGATATCAGAATGGATGAGCAATGAAAGGAAATTTCATTTATTATCTGGAGACATTGCTATACGTCT TGACTTGATATCTAAAGTCCGCGGTCTAGAGGAAGCGGAGAAATACTTTAGTACTGTTCCGGAGGCTTCAAGAGATTTCA AGGTCTATGGTGCTCTTTTGAATTGCTATGCTCAACACGGCTCGGTGGAGAAGGCGGAAGCCATCATGCAGAAAATTAAA GAGTACCCCTCACAGGGGGTAAGGTTTCCAGTATTGAATTATAATGTTATGTTGAAACTCTATGCTCGGACAGGTCAATA TGAGAAATTGTATGATTTGGTGCGAGAAATGAAAGAGGTGGACTTATGCGACCGTGTCACTGTTAATATACTGCTGAATG CCTTTGTGACAATTAATGATATAGGTCAGATGGAGAAGTTACTGGCGCAGATGGAAGTTAATCCCCTGGTAACTGTGGAC TGGTTAGCATATAGTACTGCAGCGGATGGTTATATTAGAGCTGGCCAATTTGAGAAGTCATTGGCAATGTTGAAGAAATC AGAGCAATTAATCGATGGCAAGATCAGGAGGGTTGCCTATGAATCTCTTCTAACTAAGTATGCTGCTATTGGGAAAAAGG ACGATGTGTATCGCATTTGGAACATCTGCAAAAACTTCAATAATTCCCGTAATTCAAGTTACATAAGCATGTTAACTGCA TTATCACGGTTGAATGACATTGATGGAGCTGAGAGGATTCTGGAGGAATGGGAATCAGGAAATACATGCTATGATATCAG AATTCCAAATGTGATGGTGAGTGCTTATTGTAAGTTTGGTCTGTTGGAAAAGGCTGAAGCATATATTGGGAGGCTTTTAG AAAGAAACATTAAATTCGATGGAAGTATATGGGATCGTTTGGCTGGTGGCTATTGCAGGTGCAAAGATATGGATAAATCA GTTGAAACGTTGAAGAAAGCAATGTTGGCTGGTCGACCAGGATGGAAGGTGCAACCGTTTACTTTTGCTTCATGTATTGA GCATGTAAAAGAGAAGAGAGATTCAGAATTGGCATCGGAGATTCTTAGGATATGCGGGGAACGAGGTTATTTTACTGCTG CCACCCATGATAGATTACTAAGTTATATGCATGGTGAAATCCCAGAAGTAAATGCCTTAAATCTGATAAAAGAAGATTAT CGTCTGAGGGGGGAGTTTTGAAGTTCCAGATGGAGAGAAGCAGCATGAAAAGTAACTCCAGGGAGAGGTGAGTTAAGGAA TTAACATGAAATTCCCCTTTTACTCTGAAACAATCCTGTTTCACGAATCTGAACCATTAATTTTATTAAAATTTACATAA TGACAAATAAACAAACTTCATAAATCATCAAGGAAGCACCCTGTTTTGCTATTTTTGGCTTCAGAAAAATAGCAATGCGG GTTCTATTTTTTCACCAAAATACTTCTCTTCTATCACTTCTTTAGCTTCTAACAGCAACCATTGTGCTGCATCATCCCAT GTTGGAGTTCATCCCATACTAATACTGTAGGTAGCTTTTGTCATGCACCCCATCCATTAACTATGTCAAGAAGTCACTGT AATATAGTTACACCTATATCTCATTACTTCAGTTTGTTTCCATTAGCTACTGGAAATTTTCTTGTTAGGCAAAGAGCAGG CACTACAGTTAGTTATTTAACAATTACATTATCATAATTAAGTTCTGATTAGTTTAATTTAAATAAAGTGGTCCTTCAAA ACTAAGATATCCAAGTTCAAGATTTTTAAAGATCATTCCCGGGAGTAAAAATTGAACATAAAAGTAATTGTGGATATGTT CAAAGTGAAATAATTATGCAGAACACACTTGACTGACATGTTTGAATCAACTTCTATTTTTTCAGGATCAATTTTGGCAC CTAGAAGCTACTTATTAAGCTTCTTTTAATAATTAATTTTAGCTTTAGAATCCATTGTGGAGAGATTTCCAGACATGCCA TACTTCTCTTGCCTTGAATAGGAAAATTGAAAAACGTCTTAATGAATGTCTGAAAAAGAGGGCAAAAGGCCATTGGACCA CACTAATGTGTGTGCGTCTGCGTCTGCGTGTGTTTCAAATGCTTCAATAGGGGCCTCTTCACCCCCCAGGCTTGGACCCG CAAAACTGAGGAAGCCATTTAAAGAAGGAGTTACAATAATAGATTGAAAATGAGTGTGTTTGGTAACTCATCATAAGGAC CTAGAATCAACTTAGACCGCCTTAAATCGAATCTACCTTTCATCAAAAATGTTTGGGCGGTCAATTATATAATTGATTTT AGAAGTAGAAGCGCGAAATAAAATTGCTCATCTCTTGGCGTTAAACTGAGCGCAGCAAAGTTGACAATTCTATGTTCTTG CAAATGGTGTAAGCTGCTTAATTGAGGGCACAATGCACCACACTATCAAGCTACCCCAACAAACTGCATGCAGATTATTC ATCCAATTATAATTATAGTTAAGTATCATTGGGGCCTAATGGAAAAAAATTCCAAATATTATGTCATCATTATGTGAAGG ATTTATTAAGTAAAGCTAGCACTGAGATGTGTTCTAATATTGTAAGATACTAAATTATTCTATTTGTTTAAAATCACATA ATTATTTTTTAGGATTTAAGTGAATAGTTATAGACACAGGATTATATTTTCCATATTAATATTAATATAAAGTTAAAAAT ATTTGGTACAAACCTATGTGTATCTATTGATCATAACATATATGTACATTCATATTCATGGCTAAATATTTCATCTTTAT GGTAATGAGATATCCGCTCCTTTTGAAGATTTTCGACCTGCTGATCACCTACAGAATAATGGTTCATCACAAACCTGAAC AACCTCTGTCGCTGACCATCATGCAAGACTATTTGAGTCGTTGTTCTCGAGCTCTTACATCCATAATATTTTAAATTTAA GAATTTTCAATGAATTTTATCTTCAAGTTTTTTAATGAACTTGACGATTTTTTTTTATTACACCCTTATTTCCGGTGGTC TAATACCACCACAAATGTAGAATTCAAG
CDS sequence (LotjaGi3g1v0454900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAATCGCATTGCATCAAAATGGAACCTTACCAACACACTTCGTTTCTTCTCTTCTTCTTCTTCATCTTCTCCAAC CGATTCCCTCTTCTTACGAATTTCCAGATCCGGCGACCGTGCCATCCCCATGACTCCTCTCCTCAATCAATGGCTTCAAG AGGGCAAACTCATCAACTACTCTGAGCTTCAATTTTTCATCAAGCAACTCAGAGCCTCTCGTCGCTTCAATCATGCTCTT CAGATATCAGAATGGATGAGCAATGAAAGGAAATTTCATTTATTATCTGGAGACATTGCTATACGTCTTGACTTGATATC TAAAGTCCGCGGTCTAGAGGAAGCGGAGAAATACTTTAGTACTGTTCCGGAGGCTTCAAGAGATTTCAAGGTCTATGGTG CTCTTTTGAATTGCTATGCTCAACACGGCTCGGTGGAGAAGGCGGAAGCCATCATGCAGAAAATTAAAGAGTACCCCTCA CAGGGGGTAAGGTTTCCAGTATTGAATTATAATGTTATGTTGAAACTCTATGCTCGGACAGGTCAATATGAGAAATTGTA TGATTTGGTGCGAGAAATGAAAGAGGTGGACTTATGCGACCGTGTCACTGTTAATATACTGCTGAATGCCTTTGTGACAA TTAATGATATAGGTCAGATGGAGAAGTTACTGGCGCAGATGGAAGTTAATCCCCTGGTAACTGTGGACTGGTTAGCATAT AGTACTGCAGCGGATGGTTATATTAGAGCTGGCCAATTTGAGAAGTCATTGGCAATGTTGAAGAAATCAGAGCAATTAAT CGATGGCAAGATCAGGAGGGTTGCCTATGAATCTCTTCTAACTAAGTATGCTGCTATTGGGAAAAAGGACGATGTGTATC GCATTTGGAACATCTGCAAAAACTTCAATAATTCCCGTAATTCAAGTTACATAAGCATGTTAACTGCATTATCACGGTTG AATGACATTGATGGAGCTGAGAGGATTCTGGAGGAATGGGAATCAGGAAATACATGCTATGATATCAGAATTCCAAATGT GATGGTGAGTGCTTATTGTAAGTTTGGTCTGTTGGAAAAGGCTGAAGCATATATTGGGAGGCTTTTAGAAAGAAACATTA AATTCGATGGAAGTATATGGGATCGTTTGGCTGGTGGCTATTGCAGGTGCAAAGATATGGATAAATCAGTTGAAACGTTG AAGAAAGCAATGTTGGCTGGTCGACCAGGATGGAAGGTGCAACCGTTTACTTTTGCTTCATGTATTGAGCATGTAAAAGA GAAGAGAGATTCAGAATTGGCATCGGAGATTCTTAGGATATGCGGGGAACGAGGTTATTTTACTGCTGCCACCCATGATA GATTACTAAGTTATATGCATGGTGAAATCCCAGAAGTAAATGCCTTAAATCTGATAAAAGAAGATTATCGTCTGAGGGGG GAGTTTTGA
Protein sequence (LotjaGi3g1v0454900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMNRIASKWNLTNTLRFFSSSSSSSPTDSLFLRISRSGDRAIPMTPLLNQWLQEGKLINYSELQFFIKQLRASRRFNHAL QISEWMSNERKFHLLSGDIAIRLDLISKVRGLEEAEKYFSTVPEASRDFKVYGALLNCYAQHGSVEKAEAIMQKIKEYPS QGVRFPVLNYNVMLKLYARTGQYEKLYDLVREMKEVDLCDRVTVNILLNAFVTINDIGQMEKLLAQMEVNPLVTVDWLAY STAADGYIRAGQFEKSLAMLKKSEQLIDGKIRRVAYESLLTKYAAIGKKDDVYRIWNICKNFNNSRNSSYISMLTALSRL NDIDGAERILEEWESGNTCYDIRIPNVMVSAYCKFGLLEKAEAYIGRLLERNIKFDGSIWDRLAGGYCRCKDMDKSVETL KKAMLAGRPGWKVQPFTFASCIEHVKEKRDSELASEILRICGERGYFTAATHDRLLSYMHGEIPEVNALNLIKEDYRLRG EF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 18 | 474 | 457 | 3.8E-179 | – | |
| PANTHER | 18 | 474 | 457 | 3.8E-179 | – | |
| Gene3D | 46 | 199 | 154 | 7.3E-11 | ||
| ProSiteProfiles | 128 | 158 | 31 | 8.495 | ||
| TIGRFAM | 131 | 157 | 27 | 2.7E-4 | ||
| Pfam | 131 | 157 | 27 | 9.5E-4 | ||
| Pfam | 160 | 212 | 53 | 1.9E-4 | ||
| ProSiteProfiles | 166 | 200 | 35 | 8.835 | ||
| TIGRFAM | 170 | 197 | 28 | 1.2E-4 | ||
| Gene3D | 200 | 307 | 108 | 3.3E-9 | ||
| ProSiteProfiles | 236 | 266 | 31 | 6.632 | ||
| SUPERFAMILY | 238 | 404 | 167 | 2.78E-6 | ||
| Pfam | 239 | 262 | 24 | 0.92 | ||
| ProSiteProfiles | 272 | 302 | 31 | 5.119 | ||
| ProSiteProfiles | 306 | 340 | 35 | 6.665 | ||
| Gene3D | 308 | 450 | 143 | 6.0E-17 | ||
| Pfam | 309 | 334 | 26 | 0.15 | ||
| ProSiteProfiles | 341 | 375 | 35 | 8.857 | ||
| Pfam | 346 | 373 | 28 | 3.0E-4 | ||
| TIGRFAM | 346 | 376 | 31 | 0.0014 | ||
| ProSiteProfiles | 376 | 410 | 35 | 7.18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0454900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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