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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0459500 |
| Transcript ID | LotjaGi3g1v0459500.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vesicle-associated protein 4-2; TAIR: AT4G21450.1 PapD-like superfamily protein; Swiss-Prot: sp|Q8VYN2|VAP42_ARATH Vesicle-associated protein 4-2; TrEMBL-Plants: tr|I3T8Y7|I3T8Y7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0459500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:87412929..87417840) extracted from Lotus japonicus Gifu genome v1.2.
ATTATTACTTTGAAGAAAAAACCAATTAGTGTTTCAATGTTTGATAGCTATCAAAGTTAACTCCAAATTCCATATGCTAC CAAATAATCTCAATCATAAAGGTACTCCTACTACAAACCACCATTTTGGACAAAACATGAAAAAGTTGTAAATCACATAC ATACAACACAACGAAAGGTCACGTTCCATTTTCGTTTTTGTGGAGGCAAACTACGTTCAAGAGCTTTCAGGAACAGAACA GAGACAACCCAACAACAACAAGGGTATCTGATACACTGCCAAATCTATCTTCAACCACAAAACAAACAAACAAAAAGTTC TCACCAATTCAGATACCCTTTTGCCGGAACTTCCACTTTCCGGCCAAGAATGGCTGTGGTCGGTGAAAAAACAGGGTCTG ATGTAAAAGTTCGGAGCCTTTGTAGCATGCCATTTTGGCAAACAACTCGTGCTTCTTCTTCTTCTGCTACAGGTTCTTCT ATGCACAGTGTTCATCAGCAGAATCAAGTTGTTCAGTCTCTTGATAGATCGAATCATCAACCTTCAAGCACTGTTTCTTC CTTGGCCAAGTCTCTTCTTCCTATATGGAAACGGCTACGCCTTGATCCTCCCAACAAGCTCTACTTTCCCTGTATACCTC TTAATATCTTGTTCTCTCTTTTTTTTGTGGATTTTTTTGATCATTTTCTGTTTGAGTTTTTGTTAGATTAGCCAATTCAA AGTGTGGTTTTTGTGTTTTGTTTTGATTTAATCTTTAATTGCCATTGAATGGATTGTTCATGGTTATGAATATGATAACT AATGTACCCATTTGTGAGTTCTGCTTTTGTTATCAATAACATGTCCAATTTGTGCAAGTTTTCTTATAATGGGCAGAGTA GAAAATCATGAATTGTTTAGGATTTTTCATTGAATGTTAGCTTTGGGTCCTGTCTGATTTAATGTGACTTTGTTTTGAAG ATGAACCTGGTAAGCAAGTTCGAAGCGCCGTCGCAATTAAAAACACTTGCAAGTCTCATGTGGCCTTCAAGGTTTGGTAT TTATAGCTACTACTGCTTATTTTTCAGAAAATGGTATTATTTGACACATCATAACTATGTTATCATGCAACACAATATAA ATTGGATATTGATTCTTGCTCCTCGTGGAACATTCGGATATTTTTGCAACATTGGGGTTTTCTCTAAAATGGATTCATAA TGTTAAGAGTTTTTTCTATAACTAGATGATGATATGAAGTGTAGTATGTTGAACAAGACCATCTTCAGATTTGAGTTTCA CTGCATATATTTTATAGGATTAGGATTATGATTTATGAGCACTTCTATTGTTGTGCTTTTACTAAGCATTTATGTCAATG TTGTTGCTTATTCTATTTACCCTCTCTCAATGTTGCTACTCATGGTAATATTTTCTTTTTAGTTTCAAACAACTGCGCCC AAGAGTTGTTTTATGCGCCCTCCAGGAGGTATTCTTGCACCTGGTGAAAGTATTATTGCAACTGGTAATTATCATTGCAT TTCTAGATTAGTTTTTGAGCAAAAGTGCTTGAATGCTTATAAGTTGGTGAATTTTACTACTAATTGTTCCATGTATTTGG CAGTGTTTAAGTTTGTCGAGCCACCGGATAACAATGAGAAACCAGTTGATAAAAAAAGCAGGGTTAAGTTCAAAATCATG AGCTTAAAAGTAAAAGGAGAAATGGACTATGTACCAGAACTGGTAATGTATAAATTGTCTTTTAAATGGTAATCTTCATT CTTCATCCATAAGGCATTCAAATACCAACCATAGTTGTGTCCTATAATCCTTCATGCAGTTTGATGAGCAAAGGGATCAA GTAGCAGTGGAGCAAATTTTGCGTGTGGTTTTTCTGGACCCTGAACGCCCTAGTCCTGTAAGACTAATAGCATGTTTCAA TCTGTTTATTTTTTCTTAGAATCAATTGACACTTAGAAGCTACTCACAGCATGTACCATTTTGTGTGGAATGTTATACTT AATCTTATTATGAAAAATGGTTTCTCAAAGGCCATGGATAAGCTTAAACAGCAACTGGCTGAGTCTGAGGCTACACTGGA AGCAAGAAAGAAGCCTAGAGAGGAGACAGGTCCTAGAATAGCTGGGGAAGGACTTGTTATAGATGAATGGGTCAGGCACA TTTTTCATATCTTTCTTCCATTTTTAGTACACCTTATATGGTCTAGATGAACTGGTCTTATTTTATTTTATCTCATTGAC ATTCTTAGTTTATTTTATTTTGTTTGTTTGCTTTGTAGAAAGAGAGAAGAGAAAGGTACCTGGCCAAACAGCAGGTTGAA GGGGTTGAATCAATGTAAAGTATTTCTTTTATTTCTATTTTGTTTCTTTCTGGGTAGTGTCCTTAATGTTCTCTAATTTT ATGTTCAGAAATTGAATTCCTTGGCCAGTGCTGTGTCAAATGTGGTTGAGTGACCTAGCAAAATGCTCTCAGTAGATATT GTGGAAGCATTCCTTTGTTAAATTTCATTAGCATGTTTGTGGTGTTAGATGTGATTGGATTAACCCTGTGATTGGTGATG TTTTACCTTTCCATCACCTTCTATAACTTGTTGATACATAGCTTGTCTGTTTGAAATGAAATTAATCTTCAGAGCTGATG TAGCCTTTTTTTTTTAATCTTGTTCACCTTCCTCTTCATCACACAGTTGTGTAGAGAGCACTTCTAATTATTTTTTAAAT GTTTCTATAGAAGCAAGAAACTAAACTTCCATCTAGGAATGTGTTGGGAACTTTCTTTGCTCATGCTCTAGTGCTAGATG CATGTCACTTAACAGTTAACACCTTGGGTGGCATGCTTTATTTGAGAAAAATCCATTTTTTATTTAAAAAACAGGCATAA AGTCATTATGCCAACAATGGAATCAAAAGAAGCAATCTTCTTCTCCTGGTTACTTCTTTCTTACTCCCAATTAACTAGAG AGAGAATGATAAATGATATCAAAACTCACTTTTAAGGTTTAACACTCTTTTAAACGGTTTCTCATTTATCCTAAGAGAGA ATTTATTATCCTTTAAACAAGAGAAACGTTTTTTGGGTTGTCAATAATCAATTTTAGGATAGATTCTTTTTGATAAAAAG TTTGGGTGGGTTCGGCTCTAGTCACCATCACAGTGCAGGGAAAACCTCTAGGATTATAGATCGCTTATAAAAGTACTTAA TATCACCAATCAACACGTCCTTATATCGACGACAAAAATCGAACACACAATCTTTTGTTGAGAAGTAGTTTATTCTTACC AACTGAGCCAACATATATTAGCATCATAAAGGGATTGGATTTATTGAGTTTAAAAGTAAGCAGTTTTCTAAAAGTGCACT AAAACTTTGGTAAAATTTGAAGGATTTTACATTTTACAATACCTAAACGAAATACCAAGTGTTAAGATGCCTACTTTTTT TTTTGAAAGTAAGATGCCTACTTAGTAACACAGTTATTTTGTATTTTTTATGAAAAGGGAAAAACAAAGTTTATCTAAAT TGACTCTAATCCTTATCCATAAATGTCTGGCTCTAAGCCAATCAATAACTTATTTTATATTTTGATAAAGATAAGGCCCC ACCCTGGAAAACCAGCATTAGCCTTCCTTAGCAGTATTGTTATTCACACAAAAATATGAGTTACATGTTGATCCGCATTT GGATGGCCACCACCGTGGCAGCCGCAAAACGCCACAACCGGACAAGGTTGTTCTCCGCCGGGGACTCACCGGAGCTGATG AAGAACTGTGATGTCCAGGCTGATGATTCTCTCCGGAAAGTTATGTACTTCAACTGCTGGGGTCAGGTCTAGCTCACTCT GACCATTGTTGAGTTGAGTTTGTGTTTGTAACTTGTGTTGGGGGGAAGAGAATGAATGATGCTGTTTCAGGTTGCTGTTG TAAATGGTAAACTGTAAATTGAAGATGTATAGAAGAAAATGAAATTTCCCATTTTACAGAGTAAATTTTGTTTGTTTTTG TAAATTGTGCATGCTTTTCATTCCAAAATCTAGCATACAAAACCAAAGGACAATCTCTTCATTCTCCTTGGGCAGCATTT GGTCTGAAATCTGAATTTCCTGGTCCAGAAAACCCCCTATAATGGGCTTAATAGTTGTTAATGGTAACCAGACATTTATG ATTTCAAATTATGGAATGGAATTTTATATGGGAGATTGGAAGCAAAGAAACTCATGTAAAGTCCAAATTGAATATTGCAA TTTTGCAAACTAGATGATGTCAAGCTTGTAAGCATGGCCTTTTTTTGTGTTTAGCAACCAAAATCAAATTTAAGCATTCA TTTACTGATGAGGAAAATTACTTCGGTTTAGATTATGGTATTCTCCGCTAAGACAATCATGTTTGAGTTGAATGAGACTA CTACGAGCTGTAAAGCTCTTTGTACTAAGTATTTAATTGATCAGATTATTACATGATCTCTAAAATGAATATATAACAGA AAATCCGTTTGAATGAGAAAATTAAACATAGTATTCTTTTTCCTTTTCCTTTTGTGTGCCCTTTGAGGTCTTGTCTTGCC AAGAATTCTATATGAAGTAGACCTTAAAGTGTAGTGCAAGCTTTGAAGTGGATCTTCAGATTCGGCTTGAGTCCCTGCCA AATATGAATCGCCTTGTCCAGTCAGATACCACCAAAGCTCTTGTTCTCCAGCTGACTTGCTTGCTGTTGTATGTTTGGGA ATAGTTAGAGGATGAAAATACACTACCATTAAACCTCTTAAAATGCAGTTTATATGAAATAGAATAATACCTTGTGTATA CTGAATACCAGAGCCATTGGCTACTATGGCCAATTGAAATCCAATCTCCTGGAAGCTGAGCTGCAGTTTGTTCTCCTCCT AGAGGAGCAAATTGCCCAAAATGCTTGTACCT
CDS sequence (LotjaGi3g1v0459500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGTGGTCGGTGAAAAAACAGGGTCTGATGTAAAAGTTCGGAGCCTTTGTAGCATGCCATTTTGGCAAACAACTCG TGCTTCTTCTTCTTCTGCTACAGGTTCTTCTATGCACAGTGTTCATCAGCAGAATCAAGTTGTTCAGTCTCTTGATAGAT CGAATCATCAACCTTCAAGCACTGTTTCTTCCTTGGCCAAGTCTCTTCTTCCTATATGGAAACGGCTACGCCTTGATCCT CCCAACAAGCTCTACTTTCCCTATGAACCTGGTAAGCAAGTTCGAAGCGCCGTCGCAATTAAAAACACTTGCAAGTCTCA TGTGGCCTTCAAGTTTCAAACAACTGCGCCCAAGAGTTGTTTTATGCGCCCTCCAGGAGGTATTCTTGCACCTGGTGAAA GTATTATTGCAACTGTGTTTAAGTTTGTCGAGCCACCGGATAACAATGAGAAACCAGTTGATAAAAAAAGCAGGGTTAAG TTCAAAATCATGAGCTTAAAAGTAAAAGGAGAAATGGACTATGTACCAGAACTGTTTGATGAGCAAAGGGATCAAGTAGC AGTGGAGCAAATTTTGCGTGTGGTTTTTCTGGACCCTGAACGCCCTAGTCCTGCCATGGATAAGCTTAAACAGCAACTGG CTGAGTCTGAGGCTACACTGGAAGCAAGAAAGAAGCCTAGAGAGGAGACAGGTCCTAGAATAGCTGGGGAAGGACTTGTT ATAGATGAATGGAAAGAGAGAAGAGAAAGGTACCTGGCCAAACAGCAGGTTGAAGGGGTTGAATCAATAAATTGA
Protein sequence (LotjaGi3g1v0459500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVVGEKTGSDVKVRSLCSMPFWQTTRASSSSATGSSMHSVHQQNQVVQSLDRSNHQPSSTVSSLAKSLLPIWKRLRLDP PNKLYFPYEPGKQVRSAVAIKNTCKSHVAFKFQTTAPKSCFMRPPGGILAPGESIIATVFKFVEPPDNNEKPVDKKSRVK FKIMSLKVKGEMDYVPELFDEQRDQVAVEQILRVVFLDPERPSPAMDKLKQQLAESEATLEARKKPREETGPRIAGEGLV IDEWKERRERYLAKQQVEGVESIN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 34 | 261 | 228 | 1.4E-129 | – | |
| PANTHER | 34 | 261 | 228 | 1.4E-129 | ||
| Gene3D | 72 | 201 | 130 | 1.3E-26 | ||
| ProSiteProfiles | 75 | 197 | 123 | 21.772 | ||
| SUPERFAMILY | 75 | 205 | 131 | 6.28E-33 | ||
| Pfam | 76 | 186 | 111 | 5.8E-29 | ||
| MobiDBLite | 215 | 235 | 21 | - | – | |
| MobiDBLite | 217 | 232 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Endoplasmic reticulum membrane | The lipid bilayer surrounding the endoplasmic reticulum. |
Expression pattern of LotjaGi3g1v0459500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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