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LotjaGi3g1v0469000.1

Overview

Field Value
Gene ID LotjaGi3g1v0469000
Transcript ID LotjaGi3g1v0469000.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Ribonuclease; TAIR: AT2G39780.1 ribonuclease 2; Swiss-Prot: sp|P42814|RNS2_ARATH Ribonuclease 2; TrEMBL-Plants: tr|I3SAC9|I3SAC9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0469000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:88453729..88455074) extracted from Lotus japonicus Gifu genome v1.2.

CAACAATGATCACTTCTTATTACATATGTTCTTTCTCTTTCTTTCTTTTTATGGATGTCTATACCGAATTGATGTGTATG AGTCATTTTTGGTCCACAAATATTCAATCTCTTGATGTTTTTCAAATGAACAAATTTAAGGATTTAGACAAATATGCATC ACAAAGTAGATTTTTCTGCTTCCCACCTCACTTTTCATTGAATCTTCCTGAAGGAGAAATGCTAACAAGTAACAACATTC TCTTTTGCCTTCTCTACTTAATTGATATTTTATGTTTTTTTAGTTAAATATTAGTTGTTATTAATGTTAGTAAACTAGTT CTTTCACCAGAGTTTGAATTCTAACCATTTCACCCTTCCTCAAACTCTTATGTCTCATAACTCTTACCACTATTGTAAAT CCTTTACTGTTGGTGATGGTAATTATCTATAGATCCAGCCAATCGATGAAAGGAAGTGGCAGAATTGGGCAGGGTATCTT AATAATTTCTTTCATGTTACTATTTGTCCAATCCCATGGACAATTCCAGTTCGACTACTTCAAACTTGCATTGCAGTGGA CACCGACCACGTGCGCTGTGTCAACATGTAATCAAACAAAATTTTCCCAATTTCCACAAGAATTTACAATTCATGGCCTC TGGCCCTCCACATATGCTTATCCACAACCGAACTGGTGCCAACCGCGGTTACTCTATGATACCAATAACACACAGGTATA TTGATTTATTTTTAGGATAACTTTTCCCTACATTTTCGTTCCAAACTTAATTTAAATTTATTTTTGTTTACAGTTTATTC CACTGAAAAATCAACTTAATGCTAATTGGCCGGATATGATCAAACCCACTAATGATATATTCTGGGGTCATGAATTTGAG AAGCACGGAACATGCATGACCAGCAATCAGGCAGACTACTTCATCACTACTTTAAATCTGAAGTCACAACTCATTCCAAA CGTGAAAGCTGCGATTGGATATGCTCCCAGCCGTATGACGCGAAACATTCAAGATTTTATGACATCTCTCATAAGAGCTT ATCGGTTTCAACCAGTCATTGTGTGCGATGCTTTGGCAGAAGTTTGGCTTTGCTTTGATAATAATAGGAGACTCAGAAAT TGTCCGCGACCTTGGAAGATTAATTGTAACACATTTATATCTTTGTTAGCATGACAAAAATGTATCAAGTATTGAACATC CATGGAAACCACAGAATAAAATAAGATCTATTATCATATTACTTTAGTGTTAATTGACATGGGCTAAAGTGATTCTCGTG GGATAATTAAGTGAATAAAATTTTGGCAATAATTTGAAGGTATCATATTATCATTTTAGTTCTTTG
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0469000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTAATTATCTATAGATCCAGCCAATCGATGAAAGGAAGTGGCAGAATTGGGCAGGGTATCTTAATAATTTCTTTCAT GTTACTATTTGTCCAATCCCATGGACAATTCCAGTTCGACTACTTCAAACTTGCATTGCAGTGGACACCGACCACGTGCG CTGTGTCAACATGTAATCAAACAAAATTTTCCCAATTTCCACAAGAATTTACAATTCATGGCCTCTGGCCCTCCACATAT GCTTATCCACAACCGAACTGGTGCCAACCGCGGTTACTCTATGATACCAATAACACACAGTTTATTCCACTGAAAAATCA ACTTAATGCTAATTGGCCGGATATGATCAAACCCACTAATGATATATTCTGGGGTCATGAATTTGAGAAGCACGGAACAT GCATGACCAGCAATCAGGCAGACTACTTCATCACTACTTTAAATCTGAAGTCACAACTCATTCCAAACGTGAAAGCTGCG ATTGGATATGCTCCCAGCCGTATGACGCGAAACATTCAAGATTTTATGACATCTCTCATAAGAGCTTATCGGTTTCAACC AGTCATTGTGTGCGATGCTTTGGCAGAAGTTTGGCTTTGCTTTGATAATAATAGGAGACTCAGAAATTGTCCGCGACCTT GGAAGATTAATTGTAACACATTTATATCTTTGTTAGCATGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0469000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVIIYRSSQSMKGSGRIGQGILIISFMLLFVQSHGQFQFDYFKLALQWTPTTCAVSTCNQTKFSQFPQEFTIHGLWPSTY AYPQPNWCQPRLLYDTNNTQFIPLKNQLNANWPDMIKPTNDIFWGHEFEKHGTCMTSNQADYFITTLNLKSQLIPNVKAA IGYAPSRMTRNIQDFMTSLIRAYRFQPVIVCDALAEVWLCFDNNRRLRNCPRPWKINCNTFISLLA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
SIGNAL_PEPTIDE
1 35 35 - –
Phobius
SIGNAL_PEPTIDE_N_REGION
1 19 19 - –
TMHMM
TMhelix
13 35 23 - –
Phobius
SIGNAL_PEPTIDE_H_REGION
20 31 12 - –
PANTHER
PTHR11240
26 213 188 1.7E-43
IPR001568
Phobius
SIGNAL_PEPTIDE_C_REGION
32 35 4 - –
Gene3D
G3DSA:3.90.730.10
35 225 191 7.5E-43
IPR036430
Phobius
NON_CYTOPLASMIC_DOMAIN
36 226 191 - –
SUPERFAMILY
SSF55895
37 223 187 2.36E-40
IPR036430
CDD
cd01061
39 219 181 5.43573E-49
IPR033697
Pfam
PF00445
39 210 172 1.4E-32
IPR001568
ProSitePatterns
PS00530
70 77 8 -
IPR018188
ProSitePatterns
PS00531
123 134 12 -
IPR033130

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0033897
Molecular function Ribonuclease T2 activity Catalysis of the two-stage endonucleolytic cleavage to nucleoside 3'-phosphates and 3'-phosphooligonucleotides with 2',3'-cyclic phosphate intermediates.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0469000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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