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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0470600 |
| Transcript ID | LotjaGi3g1v0470600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MD-2-related lipid recognition domain-containing protein / ML domain-containing protein; TAIR: AT3G44100.1 MD-2-related lipid recognition domain-containing protein; Swiss-Prot: sp|D4AYQ6|NPC2_ARTBC Phosphatidylglycerol/phosphatidylinositol transfer protein; TrEMBL-Plants: tr|I3SA64|I3SA64_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0470600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:88612231..88617500) extracted from Lotus japonicus Gifu genome v1.2.
AATATACTTGGAAAGTCATCCAACTCAGATGATATCATTATTATCAGAGCCACATGTTATCATTATGTTAAAGCTCTATT TGTTGGGGAACATACGGTGTCGTTTAATAGTATATAACCCAACACCTCAGCTAATCCGAAATTTGTCTGTGACTGTCGTT TTGGTTCCAACAACAAGAACCTGTGTTCCTTCTTCATTCATCCTCCCACTCTCTCTCTCTCCATGGAGTCTCAGTTTCTT CCCAAGCTCTACCTTGTTCTCTCCTTATCCATCTTCTTCCTTTCATCTTCTCTCGTTCAAGCTAAAGTTACCTTCAAATA CTGCGGTACGCTCGCTAAACCCCTACATCTCCCTCTTTGACTTTTCATTGTTCTGATTACTGGAAGTTAATCTTGATCAC TTCAACATTAGGACTTTGTTTTAATTATTCATCTGTCTGTTACCGCATGATTATGCAAATCTTAATTAATTTTTTTGCGG ATTTGACCATTTCCTTCGAATTCTATAAGAAAAGTCTCTTTTTTTCTGGGATTAAATCCTTGTTGCAAATTGCACTATGT TATTATTGTAGATAAATTTGGGTGACTGTGAATCTGTGATGTCATGTGTGACCTTCAGTGCTGGTGGCATTAGTGCCTGT GTTCATGTTTGTTCATATATGTTTAAGGTTATGTTATCTTGTTTGTCTAATTTATATTTATTTGACTGCAAATAAAATCT ATGCAGATAAGAAGGCAGACTATGCTGTCAAGGTGACTAACATTGAAATATCACCAAACCCAGTAGTCAGTGGCGACCCG GCCACATTTAAGATCTCAGCTACTTCTGGTAGTCTCTCTTTTTCCCTTCATGTTTATCTAGTTTTGCTACTTTTCAATTT TGCTTTATCTTTTTTTTTTCTGCTTTGCATTAATTAAATATGAAGTTGATCCTTATTCCTTAATAGTTCGATTGCATGCT TACATTTGGATATTTTTTTTTAAGTACGTGTGAACGTCATAGTTCATCTAAATGCCCGTTGTTCCTTATGTAAATGGGAG CTGTGTCATCAGTTTAATGTGCCACTTATCTATTTTGATTTTTGAATGAGTTGTAAGTGGAGTTTCTGTCTACCTTTTGT GCAGGACAAGCTATTGATGGTGGAGAGCTGGCAATTGGAGTATCATATGTTGGAGTGCCTGTCCATACTGAAAAATTTGA TATTTGTGATAAAGTATCCTGCCCAGCTAAGGGCAATTTTCTGATTCCTCACACCCAAACATTGCCTGCATTTACTCCAC CGGTTAGTTTCACAATATCATATATACACTCAGCTGAATATATTCTTAAAATGTCTAATTATCATGAAATAAAACTTCCT TTGTCATCTTTTAGGGGCCTCGGTAGTCTTGCATTGTGGGTGTGTCGTTATATATTTACTTTGTATAACTCTGATTTTGG TCCTAAATTTATCATTATTGAGTATTTGCAAATTTTCACTTGGTCTGCTGCAGCATCTTCCCTTTGGAGTTTGTAACTTC ATAAATTATTGCAATGATAAAGAATAATTAAACTAATCCCTTTAGACTGTCAAATGTCATGTAGCACCTTTCAAGAGGTT GGTCACATGTAATTCTTTCATAGAATATTTACCTTTTGAAAAGTAGGTTAATTGTAAGAGATCTAAACTTACCTGGCTTT CATGTAACTGATTTTCCTTTATTCAAATACAATGAAAATTGTCTCGTTCTCTCTTTATGACATCATGTATCACCTAAAAG TCAAAACTCAAAAGGCATTTTACCACCAATTAACATTCAAATGGAGATATGGTCATAAAGATAGAGGTAACTAAACCAAT GTATTAGATTGGATTATTTCCTTTGGCCTTTGAATCAAGCAATCATTCTGTTTGTCTAAATTTGGAATCTCTGTTGACTA AAACAGATTTTTTGGGGGTAAGGACTAAAAAGGTAATTTGGTAGTGGTTAATTTGTGTACCTTCCTTGGGTAGGTATGGT GGTGGATGTATTATTCATATTTCATATATATTCTATTGTACTTTCTCTCTGAATCCTTTTGAGTAATAGCATTTCCTCCC CACTCCCTTCTTCCCCTCTTAGGGTGCGGTACTGTGGTGTTATGGCTGACATTCACTTGATCAATTTCCAATTAGATAAT TGAGTCAAATGGTTCATATTGTTTCTTCTTTCTTGTTGACTAAGTTTCTGCCTTTGGCCTTCGCCCCTCCTTGCCCTGCA CCATTGCCATGCCTAAGGTTGATATCTGTAAAAGGTCGTGGTTTCTGTTTCTCTCTTCTTACATCACCGTAACCAATTTT CATTGATGACTCATTTTTTCAGTTTTCATTATTTTTGGATCACATCAAACTACGAGTGCACAGTTGAGGTCTCTTGGATA TCTTAGGAAGTGATTGAGATGTCAGCCATGTGGGTGAAATAGTGACGTGTTGAAAGCGCGATTTGTTATCACCAAATGTT TATCAAACTGAAGGGAAAACTTAACTTTACAACTATAAGACTACAAATACTCTTTGGTAGAGAATATTGGGCAGTGAAAT GCCAACAAGAGAAACAAACAAGTATAGTGGAGGTGAGGATGTGTGGATTGATGATTAGTCATTAGACATACAATAAAAGA TAAGAATAGGAACCAATGTATTGAAGTGACACTACGAGGACCCTGAATATTTGAATGGAACAAATCAAAAGGAAACATAG CTCTTTGACTAACTCTATCGGGGAAGGACTTCGGACATGTTTTCCCAACTGACAAGACTCACACTAGTGTTGACAATGTG GACAAACTAGGGACCATGAAAGTAGTTTGTAAAGATAGGATATCCCAAACGTGGGTGAACGATCTCCTGGAGACTCAACA ACAAAACATGCCATAGTAGTTGTAGGTATGCACAGATGATATAATCTTGGAGACTCATGCCCTGCTCTAATTGTTTGTCC TGTACTCCAATCCTGCACTAGAACAAAATCATTAGCAAAGATAATAGAGTAAGGTAGTGTAAAAGTGAGTTTTCTAATTG AGACTAAATTGAACGGACAACTAGGTATAAAAAGCATCCATAGAAAGTGTGGTAAGAGGGTTAGCTTGACCAAATGCTTA GTTTGCAAACCATTATCTAAAGTAACACTAGGAAGTGTGTTTGTGTAAGTTAGGGCTTTAGTCCAATAAAGTGCTTTCTT CAGTTTTCATTCTTCTTTCTTTTGAAATAATTTTACTGGCAATTTTTCAAAACTCAGTTAGCGCTTTATCTTTATTATCA ATCTTAACTCCAATTCCTTCTAATTCAGAGACAATACCACTGAGAACACTAAGATGATCAAAGACATATTATGATCCAAT GCGTAAGTTGTAAAATTGATCCTTCAACAACAATCGATTCGGGATGTCCTTTGCCTAATATAACCCTTTGAGTTTCTCCT GAAGTTCCTTGGCTGACACATTTTTTGCAGATTCGCAAGACCATTCTTAGCCAAACACAGACAAATTCTTGCTGCTCTCA AATCAAATTCCCATTTTTCATTGTGAATATTTTAAATGTTTCATTTCAATGCCATGTGTAATCCTAATTGTATTAATGCA TCCTTGACTTGTATTTTCCACGAGCCAAAATTGATTCCTCAATCAAATTTCTTCGTCAAACTTCACAACACTTGAAGAAC TGGCCATTGGAACTATATGCAGTTTGTAAATCATGCACTAGGTAGGTTCCCAAGAAAAATAGGTGAGCCACAATGGACAC GCTTAGAACCTTTTCAGAAACAAAACTTTCATAGCATTTATTAGACAGTGCTGCAACCATAGAGCGTACTAAGACACTTG ACCTAATCCTAGGCATACAGATAAGGTAGGCAGTTCCCTGCAAAAGTAACCTGGCAGAAGGTGGGAGATGGAACAAGTTA GAGCATGTGCTGGGAGTTGAACTCTGCTAACTATCATGTCTTCAACACAGCGATACCTATCTTGCTTAAGGGACTGTGGG ACATTGTGTGGCACTCTCTAAATCTTATCAAGCAACAACTGAATGTATGTTTCCATTCAGAAGAATGGCACTGCCGATTC CATCCTTGTCTTGTGAGCACCTTGTTTGTACCTGCACACTCACTGCTGTTTGTGAACTATTGAGGATCCATAAGTGTGCA CAGCAGGGCCCTTACCCCATGCTACACTCTTGTTAGGAGTATTGGATTTTCTTGCATTATCTTTGTCTAGGAAATTTTCT CTGGATTTATACTTTTTCTGTTTTTGTTATTATATTACTGAGTTCATTTCCTTTTGTTCATTTTATTGTCTGCTTTTTGT AGGGACCCTATTCTCTGAAGATGACACTCGACAATGATAAGGGTGAGCTCTTAACTTGCATCAAGTTTAATTTCAAAATC GTTCTCGGCGGATCTCTTGTGTCTGATATGTGAAGTGTCCTGCGCTGTGCAAGACTGGTTTGGGGTACCACTTATTATTT AGTATTTTGTTGTTATGTGTACTGTACAATATCACCTTTCAAGAGTTTCATCATGTAAGGCCAATGCTGTCTGATGTTTC ATTCGTATCAGTGGCATGAACTTTGCTATGATCTTGTATAAGTTTAATAAGAAAATCTTACATTTTAGTGTAATTCCCGT AACTTGAATCTTACAAATTGAATAGGAAAATATCTGATAGTTGAAAAATTAATCTTAAGATGTAAGCCTAAAGATATCGG TCATATGACTAATACACATTTTTAAAAAATGAATAGTTATACCAACTAATGATAAAATGAAGGCAATTCCTGTACCTTTT CCCTTGATGTGTTATATTTTATAATGAACTTCTATAATTTAGTCTTCACAATTTAGAAAATAGACTAAAGGGTACTAAAC TCTTATGTTTTTAAAAGTACCATAGCAATGCCCTAAACTGATTTGTTTTACTAACATATCTTCATTAACTAATTGTGGAC AAAGCCTCATGCTATTTTTAAACATTAAGTATTTGAACACACTTTAATCACACTTACACTAACATAGAGAAAGGAATAAA TGTGAAAAAAAATGATATGTAATGTGATAGAGAAAAAAATACAGCAATAGGTAAAGAAAATATGTGAAAATGAGATAGAA TAGAGATGTGATAATGAATTAAAAATGATTTTTAAATAAGACGCAATTATTGTACTAGCTAGGTGGTAAGAGAGACTCAT AAGTAAGAATATTATTAAAAAGGGTTTAAATTTTATAAATAATTTGGTGCACTTTATTTTTTTGTCTTCA
CDS sequence (LotjaGi3g1v0470600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTCTCAGTTTCTTCCCAAGCTCTACCTTGTTCTCTCCTTATCCATCTTCTTCCTTTCATCTTCTCTCGTTCAAGC TAAAGTTACCTTCAAATACTGCGATAAGAAGGCAGACTATGCTGTCAAGGTGACTAACATTGAAATATCACCAAACCCAG TAGTCAGTGGCGACCCGGCCACATTTAAGATCTCAGCTACTTCTGGACAAGCTATTGATGGTGGAGAGCTGGCAATTGGA GTATCATATGTTGGAGTGCCTGTCCATACTGAAAAATTTGATATTTGTGATAAAGTATCCTGCCCAGCTAAGGGCAATTT TCTGATTCCTCACACCCAAACATTGCCTGCATTTACTCCACCGGGACCCTATTCTCTGAAGATGACACTCGACAATGATA AGGGTGAGCTCTTAACTTGCATCAAGTTTAATTTCAAAATCGTTCTCGGCGGATCTCTTGTGTCTGATATGTGA
Protein sequence (LotjaGi3g1v0470600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESQFLPKLYLVLSLSIFFLSSSLVQAKVTFKYCDKKADYAVKVTNIEISPNPVVSGDPATFKISATSGQAIDGGELAIG VSYVGVPVHTEKFDICDKVSCPAKGNFLIPHTQTLPAFTPPGPYSLKMTLDNDKGELLTCIKFNFKIVLGGSLVSDM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 8 | 8 | - | – | |
| SignalP_EUK | 1 | 27 | 27 | - | – | |
| PANTHER | 1 | 156 | 156 | 1.1E-61 | – | |
| SignalP_GRAM_POSITIVE | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 27 | 27 | - | – | |
| PANTHER | 1 | 156 | 156 | 1.1E-61 | ||
| Phobius | 9 | 20 | 12 | - | – | |
| Phobius | 21 | 27 | 7 | - | – | |
| Gene3D | 27 | 149 | 123 | 2.4E-9 | – | |
| Phobius | 28 | 157 | 130 | - | – | |
| SUPERFAMILY | 28 | 148 | 121 | 6.53E-24 | ||
| Pfam | 29 | 147 | 119 | 2.3E-19 | ||
| SMART | 31 | 145 | 115 | 1.4E-28 | ||
| CDD | 31 | 145 | 115 | 7.18972E-34 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Intracellular sterol transport | The directed movement of sterols within cells. |
Expression pattern of LotjaGi3g1v0470600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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