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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0472700 |
| Transcript ID | LotjaGi3g1v0472700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 5'-3' exoribonuclease; TAIR: AT1G75660.1 5'-3' exoribonuclease 3; Swiss-Prot: sp|Q9FQ03|XRN3_ARATH 5'-3' exoribonuclease 3; TrEMBL-Plants: tr|V7AFU3|V7AFU3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0472700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:88988511..88993915) extracted from Lotus japonicus Gifu genome v1.2.
CTTCGATAAAAGCAAAATCTCAATGAACTCAACAGTTTCTCTCTTTCTACTGTGCATTTAATTAATTATTTTTATACTCT AAATCAAACACAGCACTCTATATAGTTACTTTACTTCCTGATAAAACTTCTCTTCATTGCTTGAAAAACATTGAATCATC AGAACACAACTTGAAAAACCAGAGTAACACACACACAAAGCTATGGGAGTTCCATCATTTTACAAATGGTTGGTGAACAA GTATCCCAACGTGGTGGGAAGCGCAACCCCAAATAGCAATGGGGTAGTGGAGTATGACAACTTCTACCTTGACATGAACT CCATAATACACCCATGTTTTCACCCTGAAGATCCAAACGTTCGTTACTTTCTCTTGCATACACTTTTCATATTTTTTTTT GCTATCATAAATTCATAACCGTTTATTTTTTCAGAGTTCACTGCCTTCAACGTTTGAAGAAGTGTTCAGAAACATGTTTG ACTACATTGATCGCCTTGTTAACACTGTCAAGCCTCGCAAGCTCTTGTACATGGCGATCGGTGAGACAATAATACTTGTT TTTATATTGTTTCATACAAATTTGTACTAAGGAGATTCTGTGTTTTTATGCTTAGATGGTGTGGCACCAAGGGCCAAGAT GAATCAACAAAGAGCAAGGCGTTTTAGAACTGCTAAGGACAATGAAATCCGTGTGGGTTTTTCATTATCAACTAATTAAT ATTTTTTTTCCTTAAAAAATCTGTTTTTTTGTTAATTTATTTTCTTTTGCCTTTATAGGAAGCTGAAGAAGAGAGGCTCC GCAAGAAATTTGAAATGGAAGGCAAACAGGTTCTTCCTAAACAAGAATCAGAAGTGTCAGATCCTAATATAATAACACCA GGAACTGAGTTCATGCATGAACTCTCAATGGCTCTGAAGAATTACTTCTCTTCAAGAATAGCTAGTGATTCATTATGGAA AGATATCATGGTATGATTTGCAATTCCGATTTCCGCATATGTTATTTTAGTGCTAAGATTGGTTCATTCACTCTATTTTT AATAATATTGATCATTGTTATTTTCTTCTGTAACAAGTTTAATTTTTCATTCTTTACTCTGTTGGTTTGTGCTTAGGTTA TTCTTTCTGATGCTAATGTTCCTGGAGAAGGGGAACATAAGATTATGTCGTATATACGGGGACAACGTAACCTTCCAGGA TATGATCCAAACACCACCCACTGCTTATATGGCTCAGTATGAAAAACTGAAAAATATTTTGATGATTTTGCTTATTCCTT AAAGTTTAGGATATATTGAAGCTCAAGCTTTTGATTTTGGAATGCAGGATGCTGATCTTATAATGCTAGCTTTGGCAACA CATGAGCCTCATTTCTCAATACTAAGAGAGGTAATTTTGAGTTTTGACAAGATACTGGCTTTGGCTGTATATAATTGTAT ATAGCTTAATGTGGAAAATCTAGTGTGGACAATTTGCAACTGCATAAAGGAATTACTGGCTATTTGAAATCTTTTTGTAC TACTGTGTACTAATATGATTCCTCAAATTCTTGGCATGTGCAGGATGGCCTTATTCAGGGTCAGGTTCCACAAAATTCTG CTAAGCCTTTGGTACAATTAAGAATTGATTTACATTCTACATGTTTGCTGTTGATATCACGAGTCTTATGGATTTTTATG TCTGCAGTTTTTGCATATTTGGATTTTGAGGGAGTATCTTGAGTTGGACATGAAGATACAAGACCCTCCTAAAAATTGCC CAATTGAGTTTGAGCGGATAATTGATGATTTCATCTTTATCTGCTTTTTCGCTGGAAATGATTTTCTTCCCCACATGCCA ACTTTTGAAATTCGCGAGGTTATTTAATTTTTTTTGTTATCTGTAGTGGTTATAGAATATAAATTCATGGTCAGCTATGT TTATTTGTTTGGCTTGATCTTATCAGGATGCTATTAATTTGCTAATGTATGTGTACAAAACCCAATTCAGCAAACTCGGA GGGTATCTTGTGGACATCACAAGGGTATCATTGTTCTTAAGCCTTAACTCATTTTTAGTTTGTTTATTTATATCCTTTAG ATTTCCCCTCTAAAATTCCAATAATTCGAAGACAATTTTATGAGTACTTGTTTTCTGTCTATGATATGAAAAACAGATTG GGGAAAAACATGCAGCTTTTGTCAAGTTATCCAGAGTTGAAAAGTTTATACTTATGGTTGGAGCTTATGAAGATAAAATC TTCAGTAAAAGATCCGAAAGCAGAGCAAAATATTTGAAGAAGCTTATCACTGATCATCAGCGTTCAGTAAGTTGAAATGC ATCTGAAAATTGGATATCTGCATTAGTATTTACAGTAATCTTGGACTCATAGGACCTTCTTATTTCCAAAAGCAGGAAGA ACAGAATGCTGCTAGTTTCTCAGATCTTGATGATGGTGGTACTTCTGATTGTGCTATTATTATTAAGAAGGCACCTGCAA CAAAAAATTCATCCGGTTTTGTTGTCAATGAGGTTTCAGCTCCGTCAGCTGAAGTATGGTTATGCTTTGTGAATCTGGAG TTTAGTTTGTCTTCATTTATATACTTTTCTTGACATCTTTGATGGAAGATTTTCTGCTCCAACATGTGTTAATGGAGTTT AATGATGTACTATCATTGATAATTTTTTTGTTCCACATTATCAGATTTTGCAGAACACAAAGGATTTAAAAGTGGAATTG GACAAATGTATGAAAGATAAAGGTGACTTGTTTAAGAGTGGAGAGTTCCGAATTGACAAGGTACCTTCTAATTCTTTCCT AGTTGGATTTTTGTTGACTTTATTCTCTGATCAATGTATGTGAAGCATGATCGTCTTAAAGTCCTATAGATGACTAGTAA GTGCTTTTACCATTCACTTCAGATAAAACTGGGAACTGCTGGATACAAACAAAGGTATTACAAAGAGAAGTTTTCGGTCG AGGGCTCAATTGACTTCGAGAAGAAGCGAAAAGATGTTGTAAGTAGTGGTCCCTTTAACTTCTTTCTAAGTGGGTTTATT TTTTCTCTCTTCTTTTGATAATCTTTTGCCAAACATTAATGGTGGTGATGACATATTGCAGGTTGAGAAGTACACTGAGG GACTCTTGTGGGTTCTTCAGTACTATTTTTCTGGAGTTGCTTCATGGTCATGGTATGCCAATTATGTTAAAGAACTTTAT TTGACTGTCATGCATTATAGGTGTGGAAAATGAGAGAATGAACACTCTAAATACAGGTTTTATCCATATCACTATGGACC ATTTGCTTCAGACTTGAAGGGCATGGGTCAAGTGAAAGCAAATTTTGAGAAAGGTGTCCCCTTCTCACCTTTTGATCAGC TCCTAAGTGTTCTTCCTCCAAGGAGGTAACCTCCCTATGTTGTTTAATCTTCCTTATCATTGATTTCCAAATTGGCAATT CCTTACCTGGTTGATTTTACTTCTGTGTAGTGCTTATGCCCTTCCAAAATCATATTCAAAACTAATGATAGATGAGGACT CGAAAATATTACACTGGTATCCTCAGGGTATGTTTTTTTTTTTAATCTTGTTTGAAGTTTTTTATTCTGATTTTTTGAGT TGTGGTTCTTTGAACTTGGTTTCGAATTCTGATTGTTCTTTTTTGTTTTATAGATTTTGAAGTTGACACAGAAGGAAAAC GTTACATGTGGCAGGTTATTTCACTCAAGTCTCTTCTAATCATTAACATGATTTTGGTAATGTTAATTCATGCGGGGCTA AACGTATGCTAAAGGAAAGAAATGCTTTGTGTCTCATTCAGGCTATCTGCAAACTACCTTGGATAAATGAAAGAGAACTT TTGTCTGAAACAAGAGAAATCCAAAATGGATTATCTGTAAGATAATCTTTGTTTACTTCCACTACTACACATGAATATTT TGAAAACTTCAATTGTCAGTTTTGTGAATGTCCTTTAATCTTCCCATTGTGTTTTGTAGCAAAATGAAAAGATTAGAAAT TCAGTCAAAGTTGATAGCTTGTTTGTTAGAAGCAGCAGCAACTTGTCAACAAAAATATGTTCCCTTTCTACTGACAATAA CCAATCCAAGTTAGAAACCAACATAAGGTTAGTCAATACTTTTATCTTGCCTAATTGTCTCGATCCTTTTTCTACTAGTA CTACTTACTACTACTTTAACATCAGCAACCTTATGATCTCATCATATATTTTAGTGTTTGAAATAACAGCTAGTTCTGTT TTTCCTTTTTTTACTTTATGAATTCACCTTCTTTTAACAGCGACAGAATTGGGGGTATCATCAGTCTTTGCCTTGAGGAT GTGGATGTGGAGAGGCCTAACTTGGGGATGGAGATTTGTGACAAAAAGCAAGAAGATCATGCCCTGTATGCTACAACAAA TGTCCTTCATTATCAATTTTGAGCATTTTGCTTTGGAAATTTTCCTGTAATTTTGTTACTGATTTATGATGCAGGTGTGT CTATTACGAGTTGCCTGCTGGGGGTAGTAGTACCGCTATGCATCATTTACTATCAGGTGTGAACATTCCTACAAAGGTAA ACTCCAGTTTCTTCTTTAACATGTTTCTAATCTAGTTAACTTTGCTAATTGCCAGTGTTCACTGGACATGGATTAAAAAA AAGTCTTTGGCTTGATATAAAAGATTTCAAATGTTTTGCAGACAATATATGAAAGTGAAATCAAGGAAACAGTTCTCTGG CATGAAAAACAGATGTACCAGACACATAACCGATTTGAGAGGTATACTGTTTATTTGTTCTTTTTCTTTCTTTTGTTGTA GGATGGTGAATCATTAACTGACAAAAGACAATTGTAGGAGTATTGCTTCCTCAAATGCAACAACTCCTCAAAACAGAAGA AGCTTTTCACTAAATGCACCTCCAGAAGTAATTTATAAAGGTGCTGGTGTTGGTTGGGGTTCTGGTAGAGGCAAGCCAAG CAACACTCCCACAATGCAAAGGCTTAATACTATGACAAATGAGAGAGTCTCACCATCCTTGTCTCCTAATCACCATCATC AAAGTTTGCAATCTCAGACAATGCCTTTTGGTAGGGGACGAGGGAGGCTTGGCCCGAATGCAAACAATGTAAATCCATGG AGGAGGGTTGATTCTAGTGGCAGTTCATACATGCCAAATCAACAGGTCTACCAAGTGAAAGATCACAATCGATGGTAGAA ATTGCAGTAGGGAAAACAGTTGTCAAATATTTAAATGGTTTTAAATCTGTGATTTTTTGTTTAGGAAAATACTACTACTT TGTTCAATTTTTTTGTGGTGGAGCTAAACTATGTTGTTAGTGTTTGTTTATTCAAATCGACTCCGTTCTCTTGTTCAGTT GTGTGTTAGAGCATCATCATCTAAAAACTGAGTTTCTACTTTAAA
CDS sequence (LotjaGi3g1v0472700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGTTCCATCATTTTACAAATGGTTGGTGAACAAGTATCCCAACGTGGTGGGAAGCGCAACCCCAAATAGCAATGG GGTAGTGGAGTATGACAACTTCTACCTTGACATGAACTCCATAATACACCCATGTTTTCACCCTGAAGATCCAAACAGTT CACTGCCTTCAACGTTTGAAGAAGTGTTCAGAAACATGTTTGACTACATTGATCGCCTTGTTAACACTGTCAAGCCTCGC AAGCTCTTGTACATGGCGATCGATGGTGTGGCACCAAGGGCCAAGATGAATCAACAAAGAGCAAGGCGTTTTAGAACTGC TAAGGACAATGAAATCCGTGAAGCTGAAGAAGAGAGGCTCCGCAAGAAATTTGAAATGGAAGGCAAACAGGTTCTTCCTA AACAAGAATCAGAAGTGTCAGATCCTAATATAATAACACCAGGAACTGAGTTCATGCATGAACTCTCAATGGCTCTGAAG AATTACTTCTCTTCAAGAATAGCTAGTGATTCATTATGGAAAGATATCATGGTTATTCTTTCTGATGCTAATGTTCCTGG AGAAGGGGAACATAAGATTATGTCGTATATACGGGGACAACGTAACCTTCCAGGATATGATCCAAACACCACCCACTGCT TATATGGCTCAGATGCTGATCTTATAATGCTAGCTTTGGCAACACATGAGCCTCATTTCTCAATACTAAGAGAGGATGGC CTTATTCAGGGTCAGGTTCCACAAAATTCTGCTAAGCCTTTGTTTTTGCATATTTGGATTTTGAGGGAGTATCTTGAGTT GGACATGAAGATACAAGACCCTCCTAAAAATTGCCCAATTGAGTTTGAGCGGATAATTGATGATTTCATCTTTATCTGCT TTTTCGCTGGAAATGATTTTCTTCCCCACATGCCAACTTTTGAAATTCGCGAGGATGCTATTAATTTGCTAATGTATGTG TACAAAACCCAATTCAGCAAACTCGGAGGGTATCTTGTGGACATCACAAGGATTGGGGAAAAACATGCAGCTTTTGTCAA GTTATCCAGAGTTGAAAAGTTTATACTTATGGTTGGAGCTTATGAAGATAAAATCTTCAGTAAAAGATCCGAAAGCAGAG CAAAATATTTGAAGAAGCTTATCACTGATCATCAGCGTTCACAGGAAGAACAGAATGCTGCTAGTTTCTCAGATCTTGAT GATGGTGGTACTTCTGATTGTGCTATTATTATTAAGAAGGCACCTGCAACAAAAAATTCATCCGGTTTTGTTGTCAATGA GGTTTCAGCTCCGTCAGCTGAAATTTTGCAGAACACAAAGGATTTAAAAGTGGAATTGGACAAATGTATGAAAGATAAAG GTGACTTGTTTAAGAGTGGAGAGTTCCGAATTGACAAGATAAAACTGGGAACTGCTGGATACAAACAAAGGTATTACAAA GAGAAGTTTTCGGTCGAGGGCTCAATTGACTTCGAGAAGAAGCGAAAAGATGTTGTTGAGAAGTACACTGAGGGACTCTT GTGGGTTCTTCAGTACTATTTTTCTGGAGTTGCTTCATGGTCATGGTTTTATCCATATCACTATGGACCATTTGCTTCAG ACTTGAAGGGCATGGGTCAAGTGAAAGCAAATTTTGAGAAAGGTGTCCCCTTCTCACCTTTTGATCAGCTCCTAAGTGTT CTTCCTCCAAGGAGTGCTTATGCCCTTCCAAAATCATATTCAAAACTAATGATAGATGAGGACTCGAAAATATTACACTG GTATCCTCAGGATTTTGAAGTTGACACAGAAGGAAAACGTTACATGTGGCAGGCTATCTGCAAACTACCTTGGATAAATG AAAGAGAACTTTTGTCTGAAACAAGAGAAATCCAAAATGGATTATCTCAAAATGAAAAGATTAGAAATTCAGTCAAAGTT GATAGCTTGTTTGTTAGAAGCAGCAGCAACTTGTCAACAAAAATATGTTCCCTTTCTACTGACAATAACCAATCCAAGTT AGAAACCAACATAAGCGACAGAATTGGGGGTATCATCAGTCTTTGCCTTGAGGATGTGGATGTGGAGAGGCCTAACTTGG GGATGGAGATTTGTGACAAAAAGCAAGAAGATCATGCCCTGTGTGTCTATTACGAGTTGCCTGCTGGGGGTAGTAGTACC GCTATGCATCATTTACTATCAGGTGTGAACATTCCTACAAAGACAATATATGAAAGTGAAATCAAGGAAACAGTTCTCTG GCATGAAAAACAGATGTACCAGACACATAACCGATTTGAGAGGAGTATTGCTTCCTCAAATGCAACAACTCCTCAAAACA GAAGAAGCTTTTCACTAAATGCACCTCCAGAAGTAATTTATAAAGGTGCTGGTGTTGGTTGGGGTTCTGGTAGAGGCAAG CCAAGCAACACTCCCACAATGCAAAGGCTTAATACTATGACAAATGAGAGAGTCTCACCATCCTTGTCTCCTAATCACCA TCATCAAAGTTTGCAATCTCAGACAATGCCTTTTGGTAGGGGACGAGGGAGGCTTGGCCCGAATGCAAACAATGTAAATC CATGGAGGAGGGTTGATTCTAGTGGCAGTTCATACATGCCAAATCAACAGGTCTACCAAGTGAAAGATCACAATCGATGG TAG
Protein sequence (LotjaGi3g1v0472700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGVPSFYKWLVNKYPNVVGSATPNSNGVVEYDNFYLDMNSIIHPCFHPEDPNSSLPSTFEEVFRNMFDYIDRLVNTVKPR KLLYMAIDGVAPRAKMNQQRARRFRTAKDNEIREAEEERLRKKFEMEGKQVLPKQESEVSDPNIITPGTEFMHELSMALK NYFSSRIASDSLWKDIMVILSDANVPGEGEHKIMSYIRGQRNLPGYDPNTTHCLYGSDADLIMLALATHEPHFSILREDG LIQGQVPQNSAKPLFLHIWILREYLELDMKIQDPPKNCPIEFERIIDDFIFICFFAGNDFLPHMPTFEIREDAINLLMYV YKTQFSKLGGYLVDITRIGEKHAAFVKLSRVEKFILMVGAYEDKIFSKRSESRAKYLKKLITDHQRSQEEQNAASFSDLD DGGTSDCAIIIKKAPATKNSSGFVVNEVSAPSAEILQNTKDLKVELDKCMKDKGDLFKSGEFRIDKIKLGTAGYKQRYYK EKFSVEGSIDFEKKRKDVVEKYTEGLLWVLQYYFSGVASWSWFYPYHYGPFASDLKGMGQVKANFEKGVPFSPFDQLLSV LPPRSAYALPKSYSKLMIDEDSKILHWYPQDFEVDTEGKRYMWQAICKLPWINERELLSETREIQNGLSQNEKIRNSVKV DSLFVRSSSNLSTKICSLSTDNNQSKLETNISDRIGGIISLCLEDVDVERPNLGMEICDKKQEDHALCVYYELPAGGSST AMHHLLSGVNIPTKTIYESEIKETVLWHEKQMYQTHNRFERSIASSNATTPQNRRSFSLNAPPEVIYKGAGVGWGSGRGK PSNTPTMQRLNTMTNERVSPSLSPNHHHQSLQSQTMPFGRGRGRLGPNANNVNPWRRVDSSGSSYMPNQQVYQVKDHNRW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 122 | 122 | 9.2E-43 | – | |
| PANTHER | 1 | 800 | 800 | 0.0 | ||
| PIRSF | 1 | 252 | 252 | 1.4E-124 | ||
| PANTHER | 1 | 800 | 800 | 0.0 | – | |
| Pfam | 1 | 238 | 238 | 9.8E-97 | ||
| CDD | 34 | 265 | 232 | 4.6583E-136 | – | |
| Gene3D | 143 | 295 | 153 | 4.9E-50 | – | |
| PIRSF | 242 | 879 | 638 | 1.0E-136 | ||
| Pfam | 280 | 740 | 461 | 5.7E-148 | ||
| Gene3D | 541 | 638 | 98 | 5.6E-27 | – | |
| MobiDBLite | 817 | 880 | 64 | - | – | |
| MobiDBLite | 817 | 837 | 21 | - | – | |
| MobiDBLite | 853 | 880 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Exonuclease activity | Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end. | ||
| Molecular function | 5'-3' exoribonuclease activity | Catalysis of the sequential cleavage of mononucleotides from a free 5' terminus of an RNA molecule. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Nucleobase-containing compound metabolic process | Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids. |
Expression pattern of LotjaGi3g1v0472700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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