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IPR027073 is a 5'-3' exoribonuclease.
<p>This entry includes 5'-3'exoribonuclease type 1 and type 2. Putative viral exonucleases 059L and 012L, plant Xrn3 and Xrn4 also belong to this family. 5'-3'-exoribonucleases are enzymes that degrade RNA by removing terminal nucleotides from the 5' end. An exosome and a 5'-3'-exoribonuclease are important in the degradation of very unstable transcripts [[cite:PUB00043318]].</p>
This description is obtained from EB-eye REST.
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | PREDICTED: 5'-3' exoribonuclease 4-like [Glycine max] gi|356576739|ref|XP_003556487.1| | 11 | ||
| – | PREDICTED: 5'-3' exoribonuclease 4-like [Glycine max] gi|356576739|ref|XP_003556487.1| | 13 | ||
| – | PREDICTED: 5'-3' exoribonuclease 4-like [Glycine max] gi|356505926|ref|XP_003521740.1| | 12 | ||
| – | PREDICTED: 5'-3' exoribonuclease 4-like [Glycine max] gi|356505926|ref|XP_003521740.1| | 4 | ||
| – | 5'-3' exoribonuclease [Medicago truncatula] gi|357471609|ref|XP_003606089.1| | 4 | ||
| – | PREDICTED: 5'-3' exoribonuclease 3-like [Glycine max] gi|356562399|ref|XP_003549459.1| | 15 | ||
| – | PREDICTED: 5'-3' exoribonuclease 3-like [Glycine max] gi|356562399|ref|XP_003549459.1| | 15 | ||
| – | 5'-3' exoribonuclease; TAIR: AT1G54490.1 exoribonuclease 4; Swiss-Prot: sp|Q9FQ04|XRN4_ARATH 5'-3' exoribonuclease 4; TrEMBL-Plants: tr|I1JRL0|I1JRL0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0778800 | 19 | ||
| – | 5'-3' exoribonuclease; TAIR: AT1G54490.1 exoribonuclease 4; Swiss-Prot: sp|Q9FQ04|XRN4_ARATH 5'-3' exoribonuclease 4; TrEMBL-Plants: tr|A0A151TXT7|A0A151TXT7_CAJCA 5'-3' exoribonuclease 4; Found in the gene: LotjaGi1g1v0778800 | 20 | ||
| – | 5'-3' exoribonuclease; TAIR: AT1G54490.1 exoribonuclease 4; Swiss-Prot: sp|Q9FQ04|XRN4_ARATH 5'-3' exoribonuclease 4; TrEMBL-Plants: tr|A0A151TXT7|A0A151TXT7_CAJCA 5'-3' exoribonuclease 4; Found in the gene: LotjaGi1g1v0778800 | 16 | ||
| – | 5'-3' exoribonuclease 3; TAIR: AT1G75660.1 5'-3' exoribonuclease 3; Swiss-Prot: sp|Q9FQ03|XRN3_ARATH 5'-3' exoribonuclease 3; TrEMBL-Plants: tr|V7AFU3|V7AFU3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0472700 | 13 | ||
| – | 5'-3' exoribonuclease; TAIR: AT1G75660.1 5'-3' exoribonuclease 3; Swiss-Prot: sp|Q9FQ03|XRN3_ARATH 5'-3' exoribonuclease 3; TrEMBL-Plants: tr|V7AFU3|V7AFU3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0472700 | 13 | ||
| – | 5'-3' exoribonuclease 3; TAIR: AT1G75660.1 5'-3' exoribonuclease 3; Swiss-Prot: sp|Q9FQ03|XRN3_ARATH 5'-3' exoribonuclease 3; TrEMBL-Plants: tr|I1MY22|I1MY22_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0007100 | 20 | ||
| – | 5'-3' exoribonuclease 3; TAIR: AT1G75660.1 5'-3' exoribonuclease 3; Swiss-Prot: sp|Q9FQ03|XRN3_ARATH 5'-3' exoribonuclease 3; TrEMBL-Plants: tr|A0A0B2PTI7|A0A0B2PTI7_GLYSO 5'-3' exoribonuclease 3; Found in the gene: LotjaGi5g1v0007100 | 20 | ||
| – | 5'-3' exoribonuclease; TAIR: AT1G54490.2 exoribonuclease 4; Swiss-Prot: sp|Q9FQ04|XRN4_ARATH 5'-3' exoribonuclease 4; TrEMBL-Plants: tr|I1NIU3|I1NIU3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0214900 | 19 | ||
| – | 5'-3' exoribonuclease; TAIR: AT1G54490.1 exoribonuclease 4; Swiss-Prot: sp|Q9FQ04|XRN4_ARATH 5'-3' exoribonuclease 4; TrEMBL-Plants: tr|I1NIU3|I1NIU3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0214900 | 20 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 6.25 |