Domain Predictions — View

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IPR041412

Source: InterPro

Description

IPR041412 is a Xrn1, helical domain.

<p>This helical domain is part of the Xrn1 catalytic core [[cite:PUB00091553]]. Xrn1 is a cytoplasmic 5'-3' exonuclease that degrades decapped mRNAs. This domain can also be found in Xrn2 [[cite:PUB00063330]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 9

Transcript	Name	Description	Predicted domains	Domain count
LotjaGi1g1v0778800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	5'-3' exoribonuclease; TAIR: AT1G54490.1 exoribonuclease 4; Swiss-Prot: sp\|Q9FQ04\|XRN4_ARATH 5'-3' exoribonuclease 4; TrEMBL-Plants: tr\|I1JRL0\|I1JRL0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0778800	Domains Coil G3DSA:3.30.110.100 G3DSA:3.40.50.12390 IPR001878 IPR004859 IPR017151 IPR027073 IPR036875 IPR041412 PF00098 PF03159 PF17846 PIRSF037239 PS50158 PTHR12341 PTHR12341:SF59 SM00343 SSF57756 cd18673	19
LotjaGi1g1v0778800.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	5'-3' exoribonuclease; TAIR: AT1G54490.1 exoribonuclease 4; Swiss-Prot: sp\|Q9FQ04\|XRN4_ARATH 5'-3' exoribonuclease 4; TrEMBL-Plants: tr\|A0A151TXT7\|A0A151TXT7_CAJCA 5'-3' exoribonuclease 4; Found in the gene: LotjaGi1g1v0778800	Domains CYTOPLASMIC_DOMAIN Coil G3DSA:3.30.110.100 G3DSA:3.40.50.12390 IPR001878 IPR004859 IPR027073 IPR036875 IPR041412 NON_CYTOPLASMIC_DOMAIN PF00098 PF03159 PF17846 PS50158 PTHR12341 PTHR12341:SF59 SM00343 SSF57756 TRANSMEMBRANE cd18673	20
LotjaGi1g1v0778800.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	5'-3' exoribonuclease; TAIR: AT1G54490.1 exoribonuclease 4; Swiss-Prot: sp\|Q9FQ04\|XRN4_ARATH 5'-3' exoribonuclease 4; TrEMBL-Plants: tr\|A0A151TXT7\|A0A151TXT7_CAJCA 5'-3' exoribonuclease 4; Found in the gene: LotjaGi1g1v0778800	Domains Coil G3DSA:3.40.50.12390 IPR001878 IPR004859 IPR027073 IPR036875 IPR041412 PF00098 PF03159 PF17846 PS50158 PTHR12341 PTHR12341:SF55 SM00343 SSF57756 cd18673	16
LotjaGi3g1v0472700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	5'-3' exoribonuclease 3; TAIR: AT1G75660.1 5'-3' exoribonuclease 3; Swiss-Prot: sp\|Q9FQ03\|XRN3_ARATH 5'-3' exoribonuclease 3; TrEMBL-Plants: tr\|V7AFU3\|V7AFU3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0472700	Domains G3DSA:3.30.110.100 G3DSA:3.40.50.12390 IPR004859 IPR017151 IPR027073 IPR041412 PF03159 PF17846 PIRSF037239 PTHR12341 PTHR12341:SF52 cd18673 mobidb-lite	13
LotjaGi3g1v0472700.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	5'-3' exoribonuclease; TAIR: AT1G75660.1 5'-3' exoribonuclease 3; Swiss-Prot: sp\|Q9FQ03\|XRN3_ARATH 5'-3' exoribonuclease 3; TrEMBL-Plants: tr\|V7AFU3\|V7AFU3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0472700	Domains G3DSA:3.30.110.100 G3DSA:3.40.50.12390 IPR004859 IPR017151 IPR027073 IPR041412 PF03159 PF17846 PIRSF037239 PTHR12341 PTHR12341:SF52 cd18673 mobidb-lite	13
LotjaGi5g1v0007100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	5'-3' exoribonuclease 3; TAIR: AT1G75660.1 5'-3' exoribonuclease 3; Swiss-Prot: sp\|Q9FQ03\|XRN3_ARATH 5'-3' exoribonuclease 3; TrEMBL-Plants: tr\|I1MY22\|I1MY22_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0007100	Domains Coil G3DSA:3.30.110.100 G3DSA:3.40.50.12390 IPR001878 IPR004859 IPR017151 IPR027073 IPR036875 IPR041412 PF00098 PF03159 PF17846 PIRSF037239 PS50158 PTHR12341 PTHR12341:SF55 SM00343 SSF57756 cd18673 mobidb-lite	20
LotjaGi5g1v0007100.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	5'-3' exoribonuclease 3; TAIR: AT1G75660.1 5'-3' exoribonuclease 3; Swiss-Prot: sp\|Q9FQ03\|XRN3_ARATH 5'-3' exoribonuclease 3; TrEMBL-Plants: tr\|A0A0B2PTI7\|A0A0B2PTI7_GLYSO 5'-3' exoribonuclease 3; Found in the gene: LotjaGi5g1v0007100	Domains Coil G3DSA:3.30.110.100 G3DSA:3.40.50.12390 IPR001878 IPR004859 IPR017151 IPR027073 IPR036875 IPR041412 PF00098 PF03159 PF17846 PIRSF037239 PS50158 PTHR12341 PTHR12341:SF55 SM00343 SSF57756 cd18673 mobidb-lite	20
LotjaGi5g1v0214900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	5'-3' exoribonuclease; TAIR: AT1G54490.2 exoribonuclease 4; Swiss-Prot: sp\|Q9FQ04\|XRN4_ARATH 5'-3' exoribonuclease 4; TrEMBL-Plants: tr\|I1NIU3\|I1NIU3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0214900	Domains G3DSA:3.30.110.100 G3DSA:3.40.50.12390 IPR001878 IPR004859 IPR017151 IPR027073 IPR036875 IPR041412 PF00098 PF03159 PF17846 PIRSF037239 PS50158 PTHR12341 PTHR12341:SF59 SM00343 SSF57756 cd18673 mobidb-lite	19
LotjaGi5g1v0214900.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	5'-3' exoribonuclease; TAIR: AT1G54490.1 exoribonuclease 4; Swiss-Prot: sp\|Q9FQ04\|XRN4_ARATH 5'-3' exoribonuclease 4; TrEMBL-Plants: tr\|I1NIU3\|I1NIU3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0214900	Domains Coil G3DSA:3.30.110.100 G3DSA:3.40.50.12390 IPR001878 IPR004859 IPR017151 IPR027073 IPR036875 IPR041412 PF00098 PF03159 PF17846 PIRSF037239 PS50158 PTHR12341 PTHR12341:SF59 SM00343 SSF57756 cd18673 mobidb-lite	20

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	11.11