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IPR004859

Source: InterPro

Description

IPR004859 is a Xrn1, N-terminal.

<p>This is the N-terminal domain of 5'-3' exoribonuclease 1/2 (Xrn1/2) [ec:3.1.11], which may be necessary for 5'-3' exonuclease function.</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0004527
Molecular function Exonuclease activity Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end.
Subterm of

Associated Lotus transcripts 14

Transcript Name Description Predicted domains Domain count
Lj0g3v0279609.1
– PREDICTED: 5'-3' exoribonuclease 4-like [Glycine max] gi|356576739|ref|XP_003556487.1|
Domains
11
Lj0g3v0279609.2
– PREDICTED: 5'-3' exoribonuclease 4-like [Glycine max] gi|356576739|ref|XP_003556487.1|
Domains
13
Lj1g3v4957670.1
– PREDICTED: 5'-3' exoribonuclease 4-like [Glycine max] gi|356505926|ref|XP_003521740.1|
Domains
12
Lj5g3v0175560.1
– PREDICTED: 5'-3' exoribonuclease 3-like [Glycine max] gi|356562399|ref|XP_003549459.1|
Domains
15
Lj5g3v0175560.2
– PREDICTED: 5'-3' exoribonuclease 3-like [Glycine max] gi|356562399|ref|XP_003549459.1|
Domains
15
LotjaGi1g1v0778800.1
– 5'-3' exoribonuclease; TAIR: AT1G54490.1 exoribonuclease 4; Swiss-Prot: sp|Q9FQ04|XRN4_ARATH 5'-3' exoribonuclease 4; TrEMBL-Plants: tr|I1JRL0|I1JRL0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0778800
Domains
19
LotjaGi1g1v0778800.2
– 5'-3' exoribonuclease; TAIR: AT1G54490.1 exoribonuclease 4; Swiss-Prot: sp|Q9FQ04|XRN4_ARATH 5'-3' exoribonuclease 4; TrEMBL-Plants: tr|A0A151TXT7|A0A151TXT7_CAJCA 5'-3' exoribonuclease 4; Found in the gene: LotjaGi1g1v0778800
Domains
20
LotjaGi1g1v0778800.3
– 5'-3' exoribonuclease; TAIR: AT1G54490.1 exoribonuclease 4; Swiss-Prot: sp|Q9FQ04|XRN4_ARATH 5'-3' exoribonuclease 4; TrEMBL-Plants: tr|A0A151TXT7|A0A151TXT7_CAJCA 5'-3' exoribonuclease 4; Found in the gene: LotjaGi1g1v0778800
Domains
16
LotjaGi3g1v0472700.1
– 5'-3' exoribonuclease 3; TAIR: AT1G75660.1 5'-3' exoribonuclease 3; Swiss-Prot: sp|Q9FQ03|XRN3_ARATH 5'-3' exoribonuclease 3; TrEMBL-Plants: tr|V7AFU3|V7AFU3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0472700
Domains
13
LotjaGi3g1v0472700.2
– 5'-3' exoribonuclease; TAIR: AT1G75660.1 5'-3' exoribonuclease 3; Swiss-Prot: sp|Q9FQ03|XRN3_ARATH 5'-3' exoribonuclease 3; TrEMBL-Plants: tr|V7AFU3|V7AFU3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0472700
Domains
13
LotjaGi5g1v0007100.1
– 5'-3' exoribonuclease 3; TAIR: AT1G75660.1 5'-3' exoribonuclease 3; Swiss-Prot: sp|Q9FQ03|XRN3_ARATH 5'-3' exoribonuclease 3; TrEMBL-Plants: tr|I1MY22|I1MY22_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0007100
Domains
20
LotjaGi5g1v0007100.2
– 5'-3' exoribonuclease 3; TAIR: AT1G75660.1 5'-3' exoribonuclease 3; Swiss-Prot: sp|Q9FQ03|XRN3_ARATH 5'-3' exoribonuclease 3; TrEMBL-Plants: tr|A0A0B2PTI7|A0A0B2PTI7_GLYSO 5'-3' exoribonuclease 3; Found in the gene: LotjaGi5g1v0007100
Domains
20
LotjaGi5g1v0214900.1
– 5'-3' exoribonuclease; TAIR: AT1G54490.2 exoribonuclease 4; Swiss-Prot: sp|Q9FQ04|XRN4_ARATH 5'-3' exoribonuclease 4; TrEMBL-Plants: tr|I1NIU3|I1NIU3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0214900
Domains
19
LotjaGi5g1v0214900.2
– 5'-3' exoribonuclease; TAIR: AT1G54490.1 exoribonuclease 4; Swiss-Prot: sp|Q9FQ04|XRN4_ARATH 5'-3' exoribonuclease 4; TrEMBL-Plants: tr|I1NIU3|I1NIU3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0214900
Domains
20

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 7.14