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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0483400 |
| Transcript ID | LotjaGi3g1v0483400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Histone H2B; TAIR: AT2G28720.1 Histone superfamily protein; Swiss-Prot: sp|Q5BJA5|H2B1_DANRE Histone H2B 1/2; TrEMBL-Plants: tr|I1LKY2|I1LKY2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0483400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:90080628..90082357) extracted from Lotus japonicus Gifu genome v1.2.
CACATCTCAACTTTTTTTCCATTTTCATTTCTAATAATTTCTCTTTTTTCTATCAATTACATCACTTATCACATCTTTAC TTTCTTTCTCCTTTCTTCATGTCTCTTTCTTCCTCCACCTCTCCACACTTCAAAAATGAGATGTGAAGATATAATTATTC CTCCTAGACACAATGGCACATCCTACTATGCCACCCTCCCGAACTTACCATTCACTTTTAACCCACACGTATATACTAGA TTCACAGGAATCTGACACCTTGTAATACACACGTCAAACTCTAGAAACCCTCACATAATTTGGCTGGTTACTATAAAACT ATACTCATAAATTAATCACCTTTCATCAACCATCTTCTATTTCTCCCTTTGCAAAAAGAAAAAAAAAAAAACTTAGCTGG AAGTGTTTAACTGATGGCTCCAAGGAAAGCTAAGAAGATAGTGGTCAGATCCACCAAGAAAGTTGTGGAGTCAAGTGTGG AAATCACAGTTGGAAGAAGCAGCAAAAGGCTAACTCGAAGTAACTTACAAAATCAGATAGGGGAAGGAGAAGTTGAAGCT CTAGGCCAAGAGAGTGTGAGGGTCATTCCAATTCAAGAAGTGATTCCTCCTCAAGCCAAAGAGGAAGATCATGATGCTAG CACAACCACTTCAACTACTGAAAACAAAGCAGAGCAAGAAAGCACTCAAAATGGTGAACATATCCAAAATCAGAAGGAAG AGAAAACCAGAGACATTGAAGAGGTGAATAAAGCAGAGCAAAACAAAGATATTGCAGAGGTGAAGAAAGCAGAGCAAAAC AGAGATATTCTAGAGGCAGAGGAAAACAGAGAGACTGTAGAGGCAGAGCAAAACAGAGGCATTGAGAAAAAACAGGGGAA GAAGGCCAAGAGGACCCGAAAAGGGAATCAAGGAAAAGAGAAAAAGAAGACAAAAAGGGGAAAGAGAAGTGAAGAAGGGT ACCAGAGGTATGTGTACAGGGTATTGAAGCAAGTTCACCCTGACATGGGGATTTCTGGTAAAGCCATGACTATTCTGAAC AATTTCATGAATGACATGTTTGAGAAGCTGACATATGAGGCTTCTAAGCTGAAGGACTACACTGGACACATGACATTGAC ATCAAGGGAGATTCAAGGAGCAGTGAGGCTGGTTTTGCCTGGGGAGCTTGGGAAACATGCCATTTCAGAAGGGGTCAAAG CTGTGACCAGATATACATCCTATGCATGATGCCTGATATATAGACATAATTATGTATATGTGGACTTTCATGTTTTTCAG TCTTTGGTGTTGGTACATGTGAAGCTAGTTTGTATATATGCACTTGAGAAGTGTTTTGGTGTAGGTAGTTTTTTGTATTT GTACTTAGGAGAAGAAGCAGCCAAATGGAAAGGTTAGATATATGTTTATGTAATGCTTCATAGGGTTTGTGTAGTGGATT ACTGATCCTTGTGGCTTTTAGTTTGTCTATAATGCTAGATGCTACTTTTCTTTTTCACTGATTTTGTGGATTGGTTCATC AGAAGTTTGGTTTGACGTTTTCAGTATAAAGAGAGAATCTCACATGAATCGATTCACTTGAGATTGGGAGTATCATGGGA AAAGACACTAGTTTGGGAATGGGAGTGAAGAATATTTGCATCTGGTGCGGTTGTGCCCTGTCGTCAAAATGTTGACATTT GATGTGTAAGAAATCATTGAAATATGAAAGAAACCGCAAGAGTATTAAGG
CDS sequence (LotjaGi3g1v0483400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCCAAGGAAAGCTAAGAAGATAGTGGTCAGATCCACCAAGAAAGTTGTGGAGTCAAGTGTGGAAATCACAGTTGG AAGAAGCAGCAAAAGGCTAACTCGAAGTAACTTACAAAATCAGATAGGGGAAGGAGAAGTTGAAGCTCTAGGCCAAGAGA GTGTGAGGGTCATTCCAATTCAAGAAGTGATTCCTCCTCAAGCCAAAGAGGAAGATCATGATGCTAGCACAACCACTTCA ACTACTGAAAACAAAGCAGAGCAAGAAAGCACTCAAAATGGTGAACATATCCAAAATCAGAAGGAAGAGAAAACCAGAGA CATTGAAGAGGTGAATAAAGCAGAGCAAAACAAAGATATTGCAGAGGTGAAGAAAGCAGAGCAAAACAGAGATATTCTAG AGGCAGAGGAAAACAGAGAGACTGTAGAGGCAGAGCAAAACAGAGGCATTGAGAAAAAACAGGGGAAGAAGGCCAAGAGG ACCCGAAAAGGGAATCAAGGAAAAGAGAAAAAGAAGACAAAAAGGGGAAAGAGAAGTGAAGAAGGGTACCAGAGGTATGT GTACAGGGTATTGAAGCAAGTTCACCCTGACATGGGGATTTCTGGTAAAGCCATGACTATTCTGAACAATTTCATGAATG ACATGTTTGAGAAGCTGACATATGAGGCTTCTAAGCTGAAGGACTACACTGGACACATGACATTGACATCAAGGGAGATT CAAGGAGCAGTGAGGCTGGTTTTGCCTGGGGAGCTTGGGAAACATGCCATTTCAGAAGGGGTCAAAGCTGTGACCAGATA TACATCCTATGCATGA
Protein sequence (LotjaGi3g1v0483400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPRKAKKIVVRSTKKVVESSVEITVGRSSKRLTRSNLQNQIGEGEVEALGQESVRVIPIQEVIPPQAKEEDHDASTTTS TTENKAEQESTQNGEHIQNQKEEKTRDIEEVNKAEQNKDIAEVKKAEQNRDILEAEENRETVEAEQNRGIEKKQGKKAKR TRKGNQGKEKKKTKRGKRSEEGYQRYVYRVLKQVHPDMGISGKAMTILNNFMNDMFEKLTYEASKLKDYTGHMTLTSREI QGAVRLVLPGELGKHAISEGVKAVTRYTSYA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 62 | 179 | 118 | - | – | |
| MobiDBLite | 79 | 95 | 17 | - | – | |
| PANTHER | 92 | 268 | 177 | 1.3E-56 | – | |
| PANTHER | 92 | 268 | 177 | 1.3E-56 | ||
| MobiDBLite | 96 | 152 | 57 | - | – | |
| Coils | 97 | 145 | 49 | - | – | |
| Pfam | 126 | 246 | 121 | 1.3E-21 | ||
| Gene3D | 137 | 270 | 134 | 3.2E-50 | ||
| MobiDBLite | 153 | 173 | 21 | - | – | |
| SUPERFAMILY | 155 | 269 | 115 | 1.2E-43 | ||
| SMART | 173 | 269 | 97 | 1.2E-51 | ||
| PRINTS | 183 | 201 | 19 | 1.3E-35 | ||
| PRINTS | 202 | 222 | 21 | 1.3E-35 | ||
| PRINTS | 224 | 241 | 18 | 1.3E-35 | ||
| PRINTS | 241 | 254 | 14 | 1.3E-35 | ||
| PRINTS | 254 | 267 | 14 | 1.3E-35 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleosome | A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Protein heterodimerization activity | Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer. |
Expression pattern of LotjaGi3g1v0483400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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