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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0483900 |
| Transcript ID | LotjaGi3g1v0483900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT5G39710.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710; TrEMBL-Plants: tr|V7C741|V7C741_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0483900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:90123868..90127345) extracted from Lotus japonicus Gifu genome v1.2.
GTGATTTATCGCATCGCATCATCCCAAGTTCCCAACCCAATGAAGGTCCTCCATCTTTCATTCACCGTCGTCCCCAAACC CAAACCCTTCCTCCGAAACGGTGTGTCGTCATGATCCGCGGGTTCGCCGGCGCTTCAGGACCGGCGATGATGATAACGGC GAGTTGCAAGAATAACAAGGCGGTGATTCTGGACCCTGATGAGAGGAATTTATTGTCTCAGGTTCATTCGCTCCTCAATG TTTATCAGGTAGATAAGGCTCATAATATGTTGAAATACATGATTGTTCGTGGGTTTTCGCCCTCCGTTGCTACATACAAC GAGCTTATTCATGGGTATTGCCGTGTAGATAGGTTTAAGGAGGCTGTGGGGATTTTGAGGGATATGGCTAAGAGGGGTTT GTCCCCTGATGTTGATACTTATTACCCTCTTATATGCGGGTTTTGCCAAACCGGGAAGCTGGGTAAGGCGTTTGAAATGA AGGCCAAGATGGTTCACAAGGGCATCTTGCCTGATGCTGACACATACGGGATTCTTATACTGACCCTGTGCCGGAAGGGA AGACTGTCCAAAGCATTTGATCTCTTCCTAGAGATGCTGCGCGAGGGTGTGTCGCCGCATAAGTACATTTATACTAGGTT GATGAATTATTATTGTTTTAAAGGTGAATTCAGTAAAGCCTTAGATTTACCTGATGAGATGATAAACAAGGGTTTTTTGC CTGATGGGATTTCACCCTCTCTTGTTATATACAACGCGCGTATTCATGGGTGTTGTGTTTTGGGGAGGGTTGAGGAGGCT TTGGGGATTTTGAGGGGCATGGCTGATATGGGTTTATCCCCTGATGTTGTTAGTTATACCAATGTTATAAAAGGGTTTTG CAAAATCGGGGAGCCGGTGAAGGCGTTTGAATTGAAGCTGGAGATGGATGAAAAGGGAATCCCACTGTATGAAGACATTT ACCAATCACTTCTGGATGACCTGTCGGATGAGGTTACTTATTCTACTTTGATCAATGATTTTCATGCTCAAGGTAACTTG ATGGACGCTTATTGTTTGGAAAGTGAAATGAGTGAGTATTCTTATTTAACAGACGATGTTATCTCAAGTGTGCGCATTAA TGGACTTAATAAGAAAGCTACGACAATAGAAGCTAAGAGGTCGCTTGTGAGGTGGTTTTATCAAGACTGTTTGAGTATTC CAGCTTATAGGACATATGATACTCTGATAGAGAACTGCAGTAATAATGAATTTAAAACTGTGGTAGGGCTTGTCAAAGAT TTCAGCATGAGGGGTTTAGCACATAAAGCAGCCAAAGCTCATGACAAAATGCTTCATGGGAATTATAAGCCAGAAGGAGC AATTTATAATTTATTAATATTTGATCATTGTAGGCATGGTAATGTTCACAAGGCGTATGATATGTACAAGGAGACGGTGC ATTCAGGGGTGGAAATAGGCCGAGCCGAGCCAAGCTTTACGTGGCCTAGGCCTGGCCTGCATTTTTTTTTCGTGGCCCAA GCCTGGCCTGTGGCCTATCAATAGGCCAAATTTTATGGCTTGGCCTGGCCTTTTCTAGGGCTTGGCCTGACCTACAAGCC TTCTTAAAAGCCTATTTAACAGACAATTTTGTCAAAAGAAGATCATTAGGCTTGCGGGCTAATAAGCCTTTTATATATCA TTGCACTTTCTTTTTCAAATAAAAAAACATGTATCATTGCATTTCAAAAACTAAACCTATATCATTGGAGGAGAGGTGGA CTTGGCAACGGTAGATCGGTAGTGGCGGCTTGCTGCAGCCTGCGTCCTGTGTGGCTGAGGATGTGCTATGCTGAATATGT TTGAAACATTTCTAATCTAGGTTAGGGTAGGGACTTAGGGTTTTCTTTTATACTAAAGTATACATCAGTTTAAAAAAAAT TAAATTATATTTATTTATATTATTAATAAAAATAATATATAAGTAGGCCGGCCTATCAGGCTAAATAGGCATTTTTAAAT TGTTTAGGCCTGACCTTTTTAGTTAAATAGGCCTTTTAAAAAGCCTAAGCCTGGCCTTTTTAATAAACGAGCCAGGCCGG GCCGAGCCTCAGACGAGCCGAGCCATAGGCCCCTGACGAGCCGGCTGGCCTATTTCCACCCCTAGGTGCATTATGGTTTT GTTTCTCATATGTTCTCTGTACTTACTCTTATTAAGGCTCTATATTATGATGGAAGGTACAAGGAGATGAGTTGTGTTAT TCAAAATGCATTGAGGAGCTGTAGTCTCAATGATTCTAAGCTACTTAAAGTAATTACTGAAATTGACATCCGGAAAGATA AAATGGGTGCATTGATGGCCTGTTACTTGATGGTGGAAAGTGTTCACATGCTTCAGCAAGTACCTAATATCTTTGGTTTT GCTTGTTGAAGTCTGTTACCATAAACCTTGAGCTGACTCTTCCAGCTTGCATCTAGCATGCTCTGGCTTGGAGACTCTGG TCCACTGTCAAGTTGTCCCTTATTGAATGTTGTGATGGAGGAAATCACCTCTCATGTAGTTAAATACTGTCCTCACTTTA GCTTTAACTACATGAGATTGAGGGTGATTTACCCGTCACAACATTAATCATGGACAGCGGGATTAAGTTGCTCCTTGGGT GATAGCCATATTTCCAGCTAGGGTTTTTATTGTGTTTTGGAATTATGTATGTGTTGTTAGATATAACTATTGTGGGATTC TCTTCTGTGGAGAATTTGAGTAATGATCCATTGTCATTTAGTTCTTTCATGTATGTTGGTATACTTTTGTGTACTCCTAT CATTTGTGGACTATATCAGTCTTTTTCAGTTACATTCTGCAAATGATGTCGCCAATTCCATTATTCTGTCGTTTGTGTTT GTGTCATTGGTAAGTCTTCCCCATCTGTTAACAAGTAGAGATCATTTTATGAGTAATTTTCAGTGAAATTATAATTAGAA TAAATTTCTTTCCCAGTCAAAGAATTACAGATGGACTTATCTAACGTTGTTAGGATGACCACCTGGAGTAAGACTAGAGT ATCGCTTTATTTAAGATCCCAGTTTTGAGAGTACCTGAGCTAAGGATCTTAGCAAAAGTTAAGATATCATGTCATGTAGG ATAACTCCAATGGTGAGATCTAACAAGATCCGAATCTTATTTTAAAATTCTCAAATAAGGACTTCATTGAAAATGCTCTA ATATCTTTGGCTTTGCTTGTTGAACTCTGTTACCATAAACCTTGAGCTGACTCTTCGAGCTTGCATCGAGCATGATTTGG CTTGGAGACTGGCAATATGGGAAGTTCTCCCTTGCTAGGAAAGCAGTGTATCATCATTTATGTGGAACTCTACAGCTATC AAAGACCTTCTAGACAGGGTAATTAAGATTTTTAAATTTTTGTTGTTGTCAAGTATGAAGTAACTTGCTTTCAATCATAA GTAGAAATTGTTTTCTTTGTGTTTTTTAAGGTATGGAA
CDS sequence (LotjaGi3g1v0483900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCCGCGGGTTCGCCGGCGCTTCAGGACCGGCGATGATGATAACGGCGAGTTGCAAGAATAACAAGGCGGTGATTCT GGACCCTGATGAGAGGAATTTATTGTCTCAGGTTCATTCGCTCCTCAATGTTTATCAGGTAGATAAGGCTCATAATATGT TGAAATACATGATTGTTCGTGGGTTTTCGCCCTCCGTTGCTACATACAACGAGCTTATTCATGGGTATTGCCGTGTAGAT AGGTTTAAGGAGGCTGTGGGGATTTTGAGGGATATGGCTAAGAGGGGTTTGTCCCCTGATGTTGATACTTATTACCCTCT TATATGCGGGTTTTGCCAAACCGGGAAGCTGGGTAAGGCGTTTGAAATGAAGGCCAAGATGGTTCACAAGGGCATCTTGC CTGATGCTGACACATACGGGATTCTTATACTGACCCTGTGCCGGAAGGGAAGACTGTCCAAAGCATTTGATCTCTTCCTA GAGATGCTGCGCGAGGGTGTGTCGCCGCATAAGTACATTTATACTAGGTTGATGAATTATTATTGTTTTAAAGGTGAATT CAGTAAAGCCTTAGATTTACCTGATGAGATGATAAACAAGGGTTTTTTGCCTGATGGGATTTCACCCTCTCTTGTTATAT ACAACGCGCGTATTCATGGGTGTTGTGTTTTGGGGAGGGTTGAGGAGGCTTTGGGGATTTTGAGGGGCATGGCTGATATG GGTTTATCCCCTGATGTTGTTAGTTATACCAATGTTATAAAAGGGTTTTGCAAAATCGGGGAGCCGGTGAAGGCGTTTGA ATTGAAGCTGGAGATGGATGAAAAGGGAATCCCACTGTATGAAGACATTTACCAATCACTTCTGGATGACCTGTCGGATG AGGTTACTTATTCTACTTTGATCAATGATTTTCATGCTCAAGGTAACTTGATGGACGCTTATTGTTTGGAAAGTGAAATG AGTGAGTATTCTTATTTAACAGACGATGTTATCTCAAGTGTGCGCATTAATGGACTTAATAAGAAAGCTACGACAATAGA AGCTAAGAGGTCGCTTGTGAGGTGGTTTTATCAAGACTGTTTGAGTATTCCAGCTTATAGGACATATGATACTCTGATAG AGAACTGCAGTAATAATGAATTTAAAACTGTGGTAGGGCTTGTCAAAGATTTCAGCATGAGGGGTTTAGCACATAAAGCA GCCAAAGCTCATGACAAAATGCTTCATGGGAATTATAAGCCAGAAGGAGCAATTTATAATTTATTAATATTTGATCATTG TAGGCATGGTAATGTTCACAAGGCGTATGATATGTACAAGGAGACGGTGCATTCAGGGGTGGAAATAGGCCGAGCCGAGC CAAGCTTTACGTGGCCTAGGCCTGGCCTGCATTTTTTTTTCGTGGCCCAAGCCTGGCCTGTGGCCTATCAATAG
Protein sequence (LotjaGi3g1v0483900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIRGFAGASGPAMMITASCKNNKAVILDPDERNLLSQVHSLLNVYQVDKAHNMLKYMIVRGFSPSVATYNELIHGYCRVD RFKEAVGILRDMAKRGLSPDVDTYYPLICGFCQTGKLGKAFEMKAKMVHKGILPDADTYGILILTLCRKGRLSKAFDLFL EMLREGVSPHKYIYTRLMNYYCFKGEFSKALDLPDEMINKGFLPDGISPSLVIYNARIHGCCVLGRVEEALGILRGMADM GLSPDVVSYTNVIKGFCKIGEPVKAFELKLEMDEKGIPLYEDIYQSLLDDLSDEVTYSTLINDFHAQGNLMDAYCLESEM SEYSYLTDDVISSVRINGLNKKATTIEAKRSLVRWFYQDCLSIPAYRTYDTLIENCSNNEFKTVVGLVKDFSMRGLAHKA AKAHDKMLHGNYKPEGAIYNLLIFDHCRHGNVHKAYDMYKETVHSGVEIGRAEPSFTWPRPGLHFFFVAQAWPVAYQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 19 | 19 | 5.0 | – | |
| Gene3D | 12 | 129 | 118 | 4.3E-22 | ||
| PANTHER | 28 | 128 | 101 | 7.7E-70 | – | |
| ProSiteProfiles | 30 | 64 | 35 | 6.807 | ||
| Pfam | 64 | 112 | 49 | 7.1E-14 | ||
| ProSiteProfiles | 65 | 99 | 35 | 13.055 | ||
| TIGRFAM | 68 | 101 | 34 | 5.7E-9 | ||
| ProSiteProfiles | 100 | 134 | 35 | 10.885 | ||
| TIGRFAM | 103 | 136 | 34 | 1.3E-6 | ||
| PANTHER | 122 | 289 | 168 | 7.7E-70 | – | |
| Gene3D | 130 | 206 | 77 | 7.3E-19 | ||
| Pfam | 130 | 162 | 33 | 3.7E-9 | ||
| ProSiteProfiles | 135 | 169 | 35 | 12.759 | ||
| TIGRFAM | 138 | 169 | 32 | 1.8E-7 | ||
| ProSiteProfiles | 170 | 204 | 35 | 10.052 | ||
| TIGRFAM | 172 | 205 | 34 | 2.5E-4 | ||
| Pfam | 173 | 202 | 30 | 0.0075 | ||
| Gene3D | 207 | 293 | 87 | 5.8E-21 | ||
| Pfam | 209 | 258 | 50 | 4.4E-12 | ||
| ProSiteProfiles | 210 | 244 | 35 | 11.367 | ||
| TIGRFAM | 212 | 246 | 35 | 1.7E-7 | ||
| ProSiteProfiles | 245 | 279 | 35 | 11.038 | ||
| TIGRFAM | 247 | 278 | 32 | 1.1E-5 | ||
| PANTHER | 293 | 448 | 156 | 7.7E-70 | – | |
| ProSiteProfiles | 293 | 327 | 35 | 7.629 | ||
| ProSiteProfiles | 380 | 414 | 35 | 6.051 | ||
| ProSiteProfiles | 415 | 449 | 35 | 8.791 | ||
| Pfam | 418 | 447 | 30 | 0.0022 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0483900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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