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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0484200 |
| Transcript ID | LotjaGi3g1v0484200.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pheophorbide a oxygenase, chloroplastic; TAIR: AT3G44880.1 Pheophorbide a oxygenase family protein with Rieske 2Fe-2S domain-containing protein; Swiss-Prot: sp|Q9FYC2|PAO_ARATH Pheophorbide a oxygenase, chloroplastic; TrEMBL-Plants: tr|I1LKY8|I1LKY8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0484200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:90139384..90144511) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCACTAGCTCACTCTATCACTGCATTAGCAACCACACTCACACTTTCATCATCACCCAGACCAAAACCCCTTCCTGC TTCTTCTTCCTTCACAAACTCACCATTTTCAACCAAACAAGCAAGACCCAGAAGCAGAAGCAACGGTTCCCTAACCCCAC CACGCGTTGCAGCACCAACCACCACAATTGAACCAGACCAATCATACCCAGAAGCTGAAAGGGACGAAACTGAGGAAGAT TTTGGAGATGATAGCTCGTCCTCGAAGTTTTCATGGAGAGATCACTGGTACCCAGTTTCGCTAATCGAAGATCTGAACCC TCGTGTGCCCACACCGTTTCAGCTTCTGGGTCGTGAAATCGTGCTCTGGTATGATACTGCAAAATCACAATGGGTTGCTT TTGATGATAAGTGTCCTCATAGACTTGCCCCTTTATCTGTAAGTGCAACACTCTCTCTTTGTTGTTCTTGTTTTTTCAGA GGAACGTGGAAAGTGATGATGTTTTTTGGTTTTGGTTTTTTCAGGAAGGGAGGATTGATGAGAGTGGAAACTTGCAGTGT TCTTATCATGGGTGGTCTTTTGATGGGTGTGGATCGTGTGTTGTGATCCCTCAGGCTTCACCTCAAGGACCTGAAGCACG TGCTGTTCGTTCTCCTAAAGCTTGTGTCACCAGGTTTCCTACCTTGGTGTCTCAGGGCTTGCTCTTTGTTTGGCCTGATG AGAATGGTTGGGACAGAGCAAATGCCTCCAAGCCTCCATTGTAATCATTCATTTAATCATGTCTTTAGTTCATTTAATAA TAATCATTTGATTGTTTAAGTCCATGTTTAGAATGGCTCTAGAGAGAAGTTCTATGCATGTTTGGAACATTGTTCGAAAA TCACAGCGAGGTCAAAATTATGGTGGCTAGAAGCAATTTCTTAGCTTTTGCTTCTATCCACCATGATTTTAACGTCACCC TGGTTTTCGAAAGAGTTTCCAATCATGCTTTGTATATTCTGGTTTCAAAATTGATTCTGATAAAAAAAAGCTGATTCAAA CATTCTAAAAGTTTGTTAAACTTATTTTAATATGGAAGTGTGTTTCATTGACATGTATGGTAAAATTGTGTTTGTTTAGG TTGCCAGCTGACTTTGATAAACCAGAGTTCGCTACTGTTAACATTCAGCGTGATCTGTTCTATGGCTATGATACTCTCAT GGAGAATGTCTCAGACCCTTCTCACATTGATTTCGCTCATCACAAGGTACAAATTAATAACACCTTTAAACTTGACCTTT AGGTGCAGCAGGATATTTTATTTTATATCAGTGTGCTAGTTGATAGTATTTTATTCTGATCCTGTTGTGAATGGATTTTG TTGAATATATTAAGTGATGCTGATGCAGTCCAAACATTGTTATTAGGGAGAACCTTTGGTTAGTTCTGTTTATTATATTT TTACATGTCTTCACTCACTGAAACTGCCACATGATTAGTATATTTAAAAACTTTGAGGGTAGGGTAATAGAAAAAAACCT TCTTCATGGGTAACGTTTGGACTGAATAGTAGAAACTGGAACTCGATTAGTACTGTATTAGTATGCGTTAGAGTGCTATA TCAGTTAGAGTGCAACGTGAATGAAATTTCCTCCCAATTCATTAAAGAGTTATGTTCACTTTTTATCTTGAAGTCATTTT AATGTCCATTGGCAGTGGCACTAGTGCCAACAGATATGTAAACATAGCCTTAGTTTTCTAACATCGAATCTATTATTTTG TGAAAATTTTGCTGAAGTTTGGCTGAATTTGGTTAGGCAGTTAAGCTGAAAGTGCAAGTATTAGGATTTTAAACTTCTTC CAGATGTTTTATATATACAATTATATATCTCTTCAGCTCATACATGTGCTTTGTCTATTTATGGTCCTTGTCATTGACAT GTTTCCTTATCACTTTACTTATTAATATAGATACTACCTAGATAAGTAGCGGGCCAGTGGCAAAAATTGAAATTATTTGC ATTGTTAGGGTTTTCCAAATCACTAACATAAATATGATCTACACTCCACAGGTAACAGGAAGGAGAGATAGAGCCAAGCC TCTTCCATTCAAGATGGATTCTCGTGGTCCATGGGGATTTGCAGGAGCTAATGAAGGGAACCCACAGATCAGTGCCAAAT TTGTTGCACCATGTTACTATATGAACAAGTACGACCAATGGATGTCTTTTGCATTGGATGTACATGCATGTCTTGCTAAG TTAGCTGTACCTTCACTATGTAGCTTTTGAGTTACATGAAGAGATTCTCAGATCACTTTTGTGATTCTTTGGATAATGCA TGAATAGTCAATGTCAATTTAAGTAGGTATATTGATTATCTCGAGTGAATGCTGTTGGAGGCTCATACAGTTCACTGCAT CCTGTTTTTATATGCAATTTTCAATAACTATTACTTTACACTAGGTTGTTCTTTTCTTTTTCATGTGTTGCTACTGAAGC TCAATACACTATGCATTATTATTGCAGGATTGAGATTGATACAAAACTCCCAGTAGTTGGTGATCAGAAATGGGTAATAT GGATATGTTCCTTCAATGTCCCCATGGCACCTGGTAAGACTCGCTCCATTGTATGCAGTGCTCGAAACTTCTTCCAGTTC TCAGTGCCAGGGCCTGCCTGGTGGCAAGTAAGATTTCTGTGTTCAATGCTGTGGTTTCTGTTCTATTTGATAAAAGCACG CTTGCATTTCTGTTCTATGGTGGTCTTTCACTGATTTATCTAAACAATAACTTGTCCTGTCATGATGATAATGGTATAGC AAATTTTGTAGCCTCAATTAATGTGGAAAGCTGGAAGCTTTTGTATAGTTTGAAAATGTACATAAACTAAGATTTTGTTT TTCTTACTTTAGAAATATGGACCAAATGTTAGGGCTTGTTTGGTTACTGTTTTGTAAATCAGATTTTCAGTATTTAGAAA CAGAAAAAAAGAAAAGAAAAATTTGTTTGATATGAATAGATTTTGAAAACTGTTCTTAAAAGTACTTCTTATTTCAGTTT TAAAAATTGAAATCTCATAACATCTGAAAGATATTTCTGTTTCTGTTTTTACTTTTTAGTTTTCTTGTCACATGCATTTC AGCTTTGAAAAACACATTACTAAACAATTTTTTTCTTGTCTTGTTTTAGAAAACAAATTTTAAAAATTATTTCTGAAAAT ATTTTTAAATTCAGAAAACTGAAAAGGGAATCAAATAAGCCCTTAGAATTTGAATGCCATACTAGTTAATCAAGTAAGTG ATTAAAATAGTTGATTGGAATGTTCTCCTGATGTTAGTGGTTGGGATGGGAAATGTTACTGGCCGTAACGAGGGTCAATG AATTATCCAAGATCACCAATTTCATGGCTTATATCTTTATTAACTAAAAGTTTTTAACATTAGTTCCGGCAGAACAGTAG CGGATGTCATTCCTTATACAAATAAGCTGCATTAGAAACTATATCTGATGCATAAGCTATTACTGAATCCAATAATTTTG TTTTATCTTACCATGTCTTTTCTGATTTCTAATCACTTCTAAATCTTACCAGCTGCCTTTAATCTTATTAATGCATACTT ATAGCTTGGGTTTTACACTTTTGAGTTTTGACTTATTCCAACCAATGGAATTTGTGCAAGCTAAATCTTCTAATATATAA TTTGGCTGAAGAAATAATATAAAAATCAACTCACACAATCAAGTTCTATATCTTAAGCTAAAACTTATAGTAATTATTGA CTTTGCTGTTTGTTCTTGTTGTAAGATGTTGTCTACTTGTATTTCTTTTTATGCACACTTTCTATTCATTGGATTGAAAC AAATTGGAATACTCAAGTCTCTACAACCTCTTAAAATGTTTTCAGGAACAAGCAAATCACAGTGATTTTTTGTTTCTCGT CTCAGGTTGTTCCTAGATGGTATGAACATTGGACCTCAAACCTTGTCTATGACGGAGACATGATTGTCCTTCAAGGTCAA GAGAAGATCTTTCTTTCAGAAACAGAGGAAGGCGGCGACATTAACAAAGTGTACACCAACATCACCTTCACACCAACACA GGCAGACCGCTTTGTCTTGGCATTTCGAAATTGGCTGAGGCGGCATGGCAACGGCCAACCGGAATGGTTTGGCAAGACCA ACAAGCAGAAGTTGCCATCAACAGTTCTTTCAAAACGCGAGGTACAAGTGTACAACAATAACTTGATCATTTTTTTCCTG TTGAACCCTCCCCACTGTCCACAAACTAAGAATGCCACACAATTTTTTAGTGTTAACTATGTTTTGTGTCCCTAAAAACC ATGTATTCTTTGGTTTTAGTCTCCATTAATTTTTCTTTCATTTTTCGTCTTTAGAAAATACAAAATTGATGTGGTTTGAG ACAACAACAACAACCAGAACAAAAACCTTAACCCAATAAGTCACGTTAGCTATATGGATTAGCTATATGGATCACCTTCG CTCGATAAAAACCAAATTTTGTGGGATATTATTAATCATTAGGTTGTTTTTAGTAATATCTTCCGACATCCTTTTTAGCC TCCCTCTACCCCCTCTTCACAGGAATCCTTCTCACTTGGCCTCTGAAGGTCTTATTTGTATATGTCTGAACTACCTTAAG TTCTTAATTGATTTCCCGTTATCTTATCCTCAATAGGCGCCACACCAACATCTCCTCTTATACTATAATTGTGTATCTGT CCATTCTAGTGAGGCTACTCATCCATCTTAACATTTTCATATAGATTAATACTAAAATTTATCAGTTTTACAAGGACGAA AAACATATTTAATATTCTTTTTTATGAGCATGAAACACAGCTTTTGATCATCATTATATTCTTGTCCTTGTAGATGTTGG ATAGATTTGAACAGCACACACTTGTGTGTTCATCATGTAAAGGAGCATATGAGGGGTTCCAAACATGGCAGAAGATCCTG ATTGGTGCAACAGTTGTGTTTTGTGCAACGTCAGGGATCCCATCAGATACCCAGTTGCGGATACTTTTGGCTGGACTAGG AATTCTCAGTGCAGGCTTAGCTTTTGCCATAAACCAACTCCAAAAGAATTTTGTATTTGTCGATTACGTGCATGCTGACA TCGATTAA
CDS sequence (LotjaGi3g1v0484200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCACTAGCTCACTCTATCACTGCATTAGCAACCACACTCACACTTTCATCATCACCCAGACCAAAACCCCTTCCTGC TTCTTCTTCCTTCACAAACTCACCATTTTCAACCAAACAAGCAAGACCCAGAAGCAGAAGCAACGGTTCCCTAACCCCAC CACGCGTTGCAGCACCAACCACCACAATTGAACCAGACCAATCATACCCAGAAGCTGAAAGGGACGAAACTGAGGAAGAT TTTGGAGATGATAGCTCGTCCTCGAAGTTTTCATGGAGAGATCACTGGTACCCAGTTTCGCTAATCGAAGATCTGAACCC TCGTGTGCCCACACCGTTTCAGCTTCTGGGTCGTGAAATCGTGCTCTGGTATGATACTGCAAAATCACAATGGGTTGCTT TTGATGATAAGTGTCCTCATAGACTTGCCCCTTTATCTGAAGGGAGGATTGATGAGAGTGGAAACTTGCAGTGTTCTTAT CATGGGTGGTCTTTTGATGGGTGTGGATCGTGTGTTGTGATCCCTCAGGCTTCACCTCAAGGACCTGAAGCACGTGCTGT TCGTTCTCCTAAAGCTTGTGTCACCAGGTTTCCTACCTTGGTGTCTCAGGGCTTGCTCTTTGTTTGGCCTGATGAGAATG GTTGGGACAGAGCAAATGCCTCCAAGCCTCCATTGTTGCCAGCTGACTTTGATAAACCAGAGTTCGCTACTGTTAACATT CAGCGTGATCTGTTCTATGGCTATGATACTCTCATGGAGAATGTCTCAGACCCTTCTCACATTGATTTCGCTCATCACAA GGTAACAGGAAGGAGAGATAGAGCCAAGCCTCTTCCATTCAAGATGGATTCTCGTGGTCCATGGGGATTTGCAGGAGCTA ATGAAGGGAACCCACAGATCAGTGCCAAATTTGTTGCACCATGTTACTATATGAACAAGATTGAGATTGATACAAAACTC CCAGTAGTTGGTGATCAGAAATGGGTAATATGGATATGTTCCTTCAATGTCCCCATGGCACCTGGTAAGACTCGCTCCAT TGTATGCAGTGCTCGAAACTTCTTCCAGTTCTCAGTGCCAGGGCCTGCCTGGTGGCAAGTTGTTCCTAGATGGTATGAAC ATTGGACCTCAAACCTTGTCTATGACGGAGACATGATTGTCCTTCAAGGTCAAGAGAAGATCTTTCTTTCAGAAACAGAG GAAGGCGGCGACATTAACAAAGTGTACACCAACATCACCTTCACACCAACACAGGCAGACCGCTTTGTCTTGGCATTTCG AAATTGGCTGAGGCGGCATGGCAACGGCCAACCGGAATGGTTTGGCAAGACCAACAAGCAGAAGTTGCCATCAACAGTTC TTTCAAAACGCGAGATGTTGGATAGATTTGAACAGCACACACTTGTGTGTTCATCATGTAAAGGAGCATATGAGGGGTTC CAAACATGGCAGAAGATCCTGATTGGTGCAACAGTTGTGTTTTGTGCAACGTCAGGGATCCCATCAGATACCCAGTTGCG GATACTTTTGGCTGGACTAGGAATTCTCAGTGCAGGCTTAGCTTTTGCCATAAACCAACTCCAAAAGAATTTTGTATTTG TCGATTACGTGCATGCTGACATCGATTAA
Protein sequence (LotjaGi3g1v0484200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALAHSITALATTLTLSSSPRPKPLPASSSFTNSPFSTKQARPRSRSNGSLTPPRVAAPTTTIEPDQSYPEAERDETEED FGDDSSSSKFSWRDHWYPVSLIEDLNPRVPTPFQLLGREIVLWYDTAKSQWVAFDDKCPHRLAPLSEGRIDESGNLQCSY HGWSFDGCGSCVVIPQASPQGPEARAVRSPKACVTRFPTLVSQGLLFVWPDENGWDRANASKPPLLPADFDKPEFATVNI QRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPFKMDSRGPWGFAGANEGNPQISAKFVAPCYYMNKIEIDTKL PVVGDQKWVIWICSFNVPMAPGKTRSIVCSARNFFQFSVPGPAWWQVVPRWYEHWTSNLVYDGDMIVLQGQEKIFLSETE EGGDINKVYTNITFTPTQADRFVLAFRNWLRRHGNGQPEWFGKTNKQKLPSTVLSKREMLDRFEQHTLVCSSCKGAYEGF QTWQKILIGATVVFCATSGIPSDTQLRILLAGLGILSAGLAFAINQLQKNFVFVDYVHADID
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 1 | 1 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 17 | 17 | - | – | |
| Phobius | 2 | 12 | 11 | - | – | |
| MobiDBLite | 12 | 89 | 78 | - | – | |
| MobiDBLite | 12 | 67 | 56 | - | – | |
| Phobius | 13 | 17 | 5 | - | – | |
| PANTHER | 14 | 540 | 527 | 6.7E-296 | – | |
| PANTHER | 14 | 540 | 527 | 6.7E-296 | – | |
| Phobius | 18 | 505 | 488 | - | – | |
| CDD | 77 | 219 | 143 | 1.05601E-86 | – | |
| SUPERFAMILY | 89 | 216 | 128 | 4.84E-33 | ||
| Gene3D | 91 | 234 | 144 | 1.0E-37 | ||
| Pfam | 95 | 179 | 85 | 1.2E-18 | ||
| ProSiteProfiles | 96 | 208 | 113 | 30.028 | ||
| SUPERFAMILY | 203 | 437 | 235 | 3.02E-23 | – | |
| Pfam | 304 | 399 | 96 | 4.8E-20 | ||
| Phobius | 506 | 524 | 19 | - | – | |
| Phobius | 525 | 542 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Chlorophyllide a oxygenase [overall] activity | Catalysis of the reactions: chlorophyllide a + O2 + NADPH + H+ = 7-hydroxychlorophyllide a + H2O + NADP+; and 7-hydroxychlorophyllide a + O2 + NADPH + H+ = chlorophyllide b + 2 H2O + NADP+. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Molecular function | 2 iron, 2 sulfur cluster binding | Interacting selectively and non-covalently with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi3g1v0484200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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