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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0486700 |
| Transcript ID | LotjaGi3g1v0486700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 4-coumarate:CoA ligase-like protein; TAIR: AT4G05160.1 AMP-dependent synthetase and ligase family protein; Swiss-Prot: sp|Q9M0X9|4CLL7_ARATH 4-coumarate--CoA ligase-like 7; TrEMBL-Plants: tr|U3PIV4|U3PIV4_PHAVU 4-coumarate:coenzyme A ligase 8; Found in the gene: LotjaGi3g1v0486700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:90402529..90410624) extracted from Lotus japonicus Gifu genome v1.2.
GATCAGTCAAGTTTTCCTTATGATTGAAATTTGAAAGCGAACCACCCCATTTTAGATGTACCCTTTTGCATCATTCCTCT CCATCTGAATAGAAAGCTATCCAAAAGTCAATCTATATCCACATGTCCACCTTCTTCATCATATATTTTATCTGTTCTGT GATCATGACCAATTCATGCACGTAATATTCACCATCAACACAAAGTCTCTTGAGTCATCGTCCTCCTCCCAAAATGAACA ATCCTCAATCACCCATTCACACACCAAGACCAAATCAAACAAACACCTTTCTTGATGAAGATAATTTCATCTTAAACATG CAATAAACAACTTATCATCATCATCAAATCATTTCCACCTTGCCTTAGGTCATTATCAATGCAGAGATCAGGGTACGGTA GCGACGGAATATACAGGTCACTAAGACCTCGTCTGGTTCTTCCAAAAGACCAAAATCTCTCACTCGTCACCTTCCTCTTC AACAGCGTCTCCTCCTTCTCCAACAAACCTGCTCTCATCGATGCCGATTCCTCCGAAACGCTCACCTTCTCGCAGCTCAA ATCTGTAGTAGCAAAGCTCGCCACCGGTTTCCTCCGCCTCGGACTCACCAAAACCGACGCCGTCCTCCTCCTCGCTCCCA ACACCATCTACTTCCCCATCTGCTTCCTCGCCGCCACCGCCATCGGCGCCGTCGTCTCCACCGCCAACCCCGTCTACACC GTCCCCGAAATCTCCCGCCAAATCAAAGACTCCAACCCGAAGCTCGTCATCACTGTCCCGGAGTTATGGGACAAGGTGAA AGCCTTCGAGTTCAAACTCCCCACCGTGATAATCGGTTCCAACGCCGCCACGAGCTCGAAGACCACGAGTTTGCGCGCGG TGATGGAGCTTGCAGGGACGGTTACTGAGCAGCCGGAGGTTGGCGTGAAACAGGGGGACACGGCGGCGCTTCTGTATTCC TCCGGGACGACGGGGGTGAGCAAGGGCGTGGTGCTGACACACGGGAACTTCATCGCGTCGTCGTTGATGGTGGCGATGGA TGATGACACGGAGGGGGAGGTTCCAGGCGTGTTTCTCTGCGTTTTGCCGATGTTTCATGTGTTTGGGCTTGCTATCATAA CTTATGCGGCGCTCCGGCGGGGGAGTGCGGTGGTGTCGATGGGGAGGTTTGAGTTTGAGGCGTTGCTGAGGGCGGTGGAG AAGCATAAGGTGACGAATCTCTGGGTGGTTCCTCCGATGGTGCTTGCTCTGGCGAAACAGAGTGTGGTTGGGAAGTATGA TCTTTCGTCGTTGAAGTATATTGGGTCAGGTGCTGCTCCTCTTGGGAAAGAGTTGATGGAGGAGTGTGCTAGGAAGTTAC CTCATGTTTCTGTTTGTCAGGTACTTCATCACCTTCTTTTGGCCCTTCAATGGTGATTTCTTTAGCATTAGGTCCCGACC CGCCAAGGTCGTGGGGATAGGAGAGGTCGAATCGCCCTAACATGGCGAGACTGGTCTATAAATAATGTAATGTAATAGTA TGATAGATAAAGGAAAAAAATGAGGTAGATGAGAGGTGAAAGTTGTTGAGAATCAGTGTGAGTAAAAGAGATGAAAAAGT GAGTATTGAGCTAGAGATTTGCTTTTAAGCCTAATGAGTGGAGATCTCCGATGGTGCGGCCCTAGATAGCTTCCATAGTG GTAATGTTGTGGTGACTTGAGACTGAGAATGTTCGGAATTCAAATGTGAGTTAGAAGTCAACATTCGATGAAAAAGAAAG TGTTGATGAACTCTCATACACCCAGTTCTATCAGTTGGTTTGCTCTTAACCCAATGTGTGGAGATCTCCTTGTCCCCCCC TCACGAGCCGACAAATTTACTATTTGGATGTCTAAGAATATGATTACTTTTTGTATGTCACTTGCATTTCTTTACCTTTC TCTTCCAATTACATTTCTCTCTTCCTTGTGCTCTTCTTAGGGCTATGGTATGACAGAAACTTGTGGAGTTGCATCTCTGG AGAATCCAAGAGTAGGGACTCGTCATACTGGCTCAACTGGAATGCTGGCTTCTGGAGTAGAAGCTCAGATAGTGAGTGTG GAGACACAGAAGCCGCTCCCTCCAAGACAGTCAGGAGAATTATGGGTACGGGGTCCTAACATGATGAAAGGTAGAGTGTC ATTCCATGTTATATTTTAGCTTATGCATAAAATTTCTATCTCTAATGTTTAGTATGTGATTTCATAAGAAAAAAAGTTCT ATGCTTACTGTTGAAAGTACAATTGTACAAACATATAAAAAGATCAATGCAGCATAAACTGTCTGATTCCCTCTAAGTAT ATCTATGATTTCTCTGCTAATGCCTCTGCTCCTCTTGGAACTAATATATAATTAGACTGGAACATCTTCTTTCACACTTT TAGCCTTCCTTCTTGATGCTTTTAAATACTTTTATAATTATATTGAATCTTTTTGGGGGGTTTACATGTGTTACTTTACA CGGATATGGCATTAATTTGTATTAGGCTTTTCCTAGATGAAAACTTAGTGCAACCGTTACACAACTTTTCAGGTTATCAT AACAATCCAGAAGCCACAAAATTGACTTTGGATAAAAAGGGATGGGTACATACAGGAGATGTTGGATATTTTGATGAGGA TGGACAGCTCTATGTTGTTGACCGTATCAAAGAACTAATCAAGTATAAAGGTTTTCAGGTATGTAATCTAAATGATGTCA ACAATAAAAGTATATTTCTATGGTTTGCATTACATCAGAAGATAATGCGATGTTATAGAATGTTAGCATCAGCTTCTCTT TCTTGAGAATCAATTCTAAAATCTGGAAGTTACTCACAAATTAGAAGCTTCTAGCTTAGTGTGCATTGAACAAATGTTCC ATGCATGTCCCAAATTGTTAATGAGTCAATCCATAAGAAATTAAGAATGCATGTGATACTGTGTTAGGGTAATTATTTGT TTATTGGTACAACCCTTCTGGTTAATTGTTTAAGTGAAAATCAGCATTTATGTTCAGGAGTTTCATCTTATTTCATCATG TGCTCCTTGTCTCATGGTTCAAACTAGGTTGCACCAGCAGAACTTGAAGGGCTTCTAGTTTCTCATCCTGAAATACTAGA TGCTGCTGTCGTCCCGTACGTATCACATGCATGATCTGTAGTTTAATTTGATAAATATTTTGTTAATTATCTATTATTGA AATTCATTATTGAGTTTATTTTTTCTTTCCTTTATGTAGATATCCGGATGATGAGGCTGGTGAAGTTCCAATTGCCTATG TTGTTCGTTCACCCAATAGTTCACTGACTGAGAAACAAATTCAGGAATTTATTGCTAGTCAGGTGAGAACAAGATAAGAA TGAGAGTGATGTGATCTCTGACTTGCACTCATAAAACATAGAAAAAAGTTCTCCTTAAGATATAACTTAAGTAGACTGAA ACTATAGTTGTGATATGCTCTTTTAAACAAACCAAAATGTGCTGCTTTTAAAGAAAATTATTCCTCTTTTGCTTTGGTTC TCTATGTTTGAGCCTACAAATACTCGTTTTGTAAATGAGCATAAACACCAAAATTTACTGTGTACTCAGTACTAGACACT GGGTTGTATAGTCCTCAAATTAAGCAGGGAAACCATTTGATCTGTATATTCACAGGTTGCCAAGTTGATCACATTTGAAT GATTTCTCTATGTGCATTTGGAAGTTAATCCTTTTTATAATTCTATTTTCAGGTTGCACCTTTCAAAAAATTGAGAAGGG TGACATTCATCAGCAGTGTTCCAAAGACAGCTTCAGGAAAACTTCTCAGAAGAGAGCTTATTGCTAAAGCAAAATCCAAA ATATAAGATATTAAAATTGTTTTGGTCAATTTCTTTGATAGAATGCAAGTTTGGAGTGCATGATGTAGGATTAAGCAATA TGTGTTTGGGTAAACAACTTAATTAAATACTTATGCTAATAAGAGCTTATCGCATAAGCACTTATACAAGTGTTGAGAGA GCTTATATAAACAGCTTACGACCTTCTTACAAGGTGTTTTGAACTTATTTTCATAAGCAAATCTTATTTTCAAATAGCTT AAGAAAAAAAACTTATTCTTATTTATAACTTATTTTCAATTTATTTCAATAATTTTCTTAAAATAACTTATAAATAGTTT TCCCAAACACATCTAGTTCATAAGCTAATTTGATAAGCTTATTGAATTAAGCTTAAAATAGGTTGTAGATAGGTATACAT GTTTATTCATAAGATGATTTAAGTAGTTTATAAAAGTAAGCTTGAATAAGCTCTAATTCAAACGGGTAGTCAATCAAGTT TACAATTAAAACCAGTAAGAAGCTCACCAGATTCCAGTAGCACTGGTTTGCAACTGAATGCTGTGAATAACACCAAGTAC AAGTGAATTCCTACTATTTTTTGCCATTTTAATAATTCATGGTAATGGTATGATTGGAATTGTTTAGTTTACCATAAGTT TTGGGTGAATTGCACTTACCTCCTTTGAGGTTTTGCATTGTCTCCCCCTATATTATTTAACAAGACAATAACCACAATTA TTTTATTGGAACATTCTAACCTCCCTTGAAATTTAGCATAATTGCATCGCTACTGCATTGTCTGTCTTAGGTACCTGGAA GTGAACTATATTCGGAAGTGTCTGTTCAAAGTTGAGAGCTATAGCACATGTTTATAAAAGCTAAGCCTAACAAAATCACT TAGAAGTAATTGACTATGACAGTTTGATGCAAGCAAAATGCAATTAATACATGTGACAAATTATATGTGATCAGAAACTC CAATCTGCAATTGCATAGTCCAACATTTCCTCTACAAACTGTTAGGGAAGATAGACAGGCAAGAGCAGATTGATCAAACA TCTTTGATGCATTAACTACAAGACAGAACATGATCTTTGACACTGTCTATGCCTAGAGCCGGCTAGTGCATGCGTCCATT ATTCTAAGGGAAAACTAAAGCGATATAAACCTTCTTATCTCAGTTTAATAATCCTCGACAACTTTGCCATCTCCGTCCAC TTACTCTGATTGTCATCTAAGCGAAGATAAAGATGTCATGGGAACATTTAATATGAAGAAAATAGGGAGATAGAAAATGT GCATAAGCTAGGAGTGGGAAAAAGATATGAAAAAAGTACCACCAGTTTAACATCATTCTTTTTGTCTGATCAGTACCTCG TGAAAGCATTACGGCATTGTCCAGTTGCAAGTAATTAATCCAATTCAACAAGTCTTGTGCTCATCGATCGTCCTGTCCAG TGTCTCAATCTTGGAGACTTTGGTGTCAACAAAAAACAACACCACCCTTCACTATGTCAATTCACCATATACATATATAA CACCCTATATTTTTCTCTTGTTATATTTCATCTTCATATAATCATATCCACAATAGTTCAATATATATTATCTTCTTTCA ACCTAGCTCAATGCAGAGTGCAGGGTATGGTAGTGACGGAATATATAGGTCACTAAGGCCTTCTCTGTTGCTACCAAAGG ACCAAAATCTCTCACTAGTCTCATTCCTCTTCAACAATGTCACCTCTTTCCCTAACAAACCCGCTCTCATTGATGCTGAT TCCGCCAAAACCATCACCTTCTCCCAACTCAAATCCATAGTTGCCAGGCTTGCCGGTAGTTTCCTCCGACTCGGTCTCGC TAAAAACGATGTCGTCCTCCTCTTCGCCCCTAACAACATCTACTTCCCCATCTGCTTCCTTGCTGCCACGGCCATTGGCG CCGTCGCCTCCACCGCTAACCCCCTCTACACTATTGCTGAACTCTCCAGACAAATCAAGGATTCTAACCCCAAGCTTGTC ATCACTGTCCGTGAATTATGGGACAAAGTGAAAGGCTTCAACTTCAAACTCCCCACAGGTAGCGTTTTGCATGTATATAT ATAGATACAACACCAAACAAACAAACAAGCTATCAAACAAACAAACAAGCTATCATAAAAATAAAAATGAAATGTAACCA TGATCATAGTATGAGTGAATGCACTAGTGTAAAACTATTTTTTTATTATAGTGTAAACCTTTTCTAAACCGTGCATATCC ATTAATCTATATATATTTTGTTATTGCTAGTGATCATCGGTTCAGATGATGCCACCATTGCCACGAGTTCAAAGACCTTA AGCTTCAATGCGTTAATGGAAATGGCAGAGCCAGCTAAAGAGTTGCCACAAAACAACGTGAAGCAGAGCGATACTGCGAC AATTCTATACTCTTCTGGGACTACAGGGGTGAGCAAAGGCGTGCTACTAACACATGGAAACTTCATCGCGGTGTCGCTAA TGGTAGGAATGGACGATGATTTGGCAGGTGAGTCAGAGGGCGTGTTCCTCTGCGTTCTGCCAATGTTTCACTTGTTCGGG ATCGCACTCGTCTCGTACGCGTCGCTCCGGCGGGGGAATGCGGTGGTGTCAATGGGAAGGTTTGAGATTGAGGCGCTTCT AAGGGCTGTTGAGAAGTACAAGGTGACTGATATGTGGCTTGTTCCTCCTATCGTGCTTGCTCTGGTGAAACTGAAACAGA GTGTGGTTGGTAACTATGATCTTTCATCGTTGAAGTATGTTGGTTCTGGTGCTGCTCCTCTTGGGAAAGAGTTGATGCAG GAGTGTGCCATTCGATTTCCTCATGTTACTGTTTATCAGGTATTTAGTAGTTTTAATTTGTGCATGAGCTAATGAGATAT TAGTGAACTTTTTAATGATTTTCTGCCTCCCATCATATTTATAAGAATTAAATCAGAGATTGACTTTGATCTTTTTAATA AGTTTGTGCTGCATTAATTACTTTTTGACATATTTTGATGTGGTCTCAGGGCTATGGTATGACAGAAACTAGTGGCATTA TTTCTATGGAGAATCCAAGAGAAGGGGTTCGTCATAGTGGCTCAACTGGATTGCTGGCTGCAGGAATTGAAGCTCAAATA GTGAGTGTGGAGACACAAAGGTCACTCCCTCCTAGACAGATGGGGGAAATATGGGTACGAGGTCCTAACATGATGCAAGG TAAAGTGTCAAAATTATGGTGGACAGTGAAAATCTTGAAGTTTTTACCCATGTGACTTTCTGATTAGGATTGTAAATCAG AATCTTCTTGTTTTCATCCAATGTTTTGAGAGACAAGCGGCAACATGTTTGACTTTATATGAAGTTGGCATTAATTTGTA TATGTAGTCTTTTTTTTCCTACATAAAATTCACTGTGACTAGGACAAATTTCAGGTTATCATAACAATCCAGAAGCCACA AGATTGACTATAGATAATAATGGATGGTTACATTCAGGAGATCTTGGATATTTTGATGAGGATGGTCAACTATATATTGT GGACCGTATTAAAGAATTGATCAAGTATAAAGGTCTTCAGGTATGTAGGAGTATGTAATATTGTAATATGTCAACAGTAA ATATTCATATATATGAGGTCTTAACCTTAATTAATTAGTGTCATATTTACTTGGTCATTAGAAATGTCATGTACTCCCTC TGTTCCTTAATACCTCTGTTCCTTAATATAAGTCACATTTTTTGAAAAAAATTTGTTCTTAAATATATGTCACTTTCTAA TATCTAGGAAGCATTAAATAATTTTTTCCAAATTCACCCTCATATTTAATATGAAAGAGATTATGAACTTTTTGAATATT AACTTGGAGAGAGAAAATCATAGGAAAGTAAATAAGAGTAGTCTAGGAAAGCTAATCATTTCTTTTACAAATTTATTGTT ACTAACTACTTTTCTTAATCTAAGATAATTAGTTATTTGTGACTTATAAATAGAAACAGAGGGGAGTACAAATGTCCCAT GTCCCAAAAATTATTTGTCAATCATAATGTTTCAATAGTAATAATGCATATGTGATACCCTATTAACTCTATTTGGTTGA CTGTGATCAAGAGTTTACTTTATGTGCTCTTTGTCTCATAACTAGGTTGCACCAGCAGAACTTGAAGGGCTTCTCGTTTC TCACCCTGAAATACTAGATGCTGTTGTTGTCCCGTAAGTATCATCACACATATGATCTGTAGTTTCATTTCAAAATACCA ACAACTTCTAGCCAAC
CDS sequence (LotjaGi3g1v0486700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGAGATCAGGGTACGGTAGCGACGGAATATACAGGTCACTAAGACCTCGTCTGGTTCTTCCAAAAGACCAAAATCT CTCACTCGTCACCTTCCTCTTCAACAGCGTCTCCTCCTTCTCCAACAAACCTGCTCTCATCGATGCCGATTCCTCCGAAA CGCTCACCTTCTCGCAGCTCAAATCTGTAGTAGCAAAGCTCGCCACCGGTTTCCTCCGCCTCGGACTCACCAAAACCGAC GCCGTCCTCCTCCTCGCTCCCAACACCATCTACTTCCCCATCTGCTTCCTCGCCGCCACCGCCATCGGCGCCGTCGTCTC CACCGCCAACCCCGTCTACACCGTCCCCGAAATCTCCCGCCAAATCAAAGACTCCAACCCGAAGCTCGTCATCACTGTCC CGGAGTTATGGGACAAGGTGAAAGCCTTCGAGTTCAAACTCCCCACCGTGATAATCGGTTCCAACGCCGCCACGAGCTCG AAGACCACGAGTTTGCGCGCGGTGATGGAGCTTGCAGGGACGGTTACTGAGCAGCCGGAGGTTGGCGTGAAACAGGGGGA CACGGCGGCGCTTCTGTATTCCTCCGGGACGACGGGGGTGAGCAAGGGCGTGGTGCTGACACACGGGAACTTCATCGCGT CGTCGTTGATGGTGGCGATGGATGATGACACGGAGGGGGAGGTTCCAGGCGTGTTTCTCTGCGTTTTGCCGATGTTTCAT GTGTTTGGGCTTGCTATCATAACTTATGCGGCGCTCCGGCGGGGGAGTGCGGTGGTGTCGATGGGGAGGTTTGAGTTTGA GGCGTTGCTGAGGGCGGTGGAGAAGCATAAGGTGACGAATCTCTGGGTGGTTCCTCCGATGGTGCTTGCTCTGGCGAAAC AGAGTGTGGTTGGGAAGTATGATCTTTCGTCGTTGAAGTATATTGGGTCAGGTGCTGCTCCTCTTGGGAAAGAGTTGATG GAGGAGTGTGCTAGGAAGTTACCTCATGTTTCTGTTTGTCAGGGCTATGGTATGACAGAAACTTGTGGAGTTGCATCTCT GGAGAATCCAAGAGTAGGGACTCGTCATACTGGCTCAACTGGAATGCTGGCTTCTGGAGTAGAAGCTCAGATAGTGAGTG TGGAGACACAGAAGCCGCTCCCTCCAAGACAGTCAGGAGAATTATGGGTACGGGGTCCTAACATGATGAAAGGTTATCAT AACAATCCAGAAGCCACAAAATTGACTTTGGATAAAAAGGGATGGGTACATACAGGAGATGTTGGATATTTTGATGAGGA TGGACAGCTCTATGTTGTTGACCGTATCAAAGAACTAATCAAGTATAAAGGTTTTCAGGTTGCACCAGCAGAACTTGAAG GGCTTCTCGTTTCTCACCCTGAAATACTAGATGCTGTTGTTGTCCCGTAA
Protein sequence (LotjaGi3g1v0486700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQRSGYGSDGIYRSLRPRLVLPKDQNLSLVTFLFNSVSSFSNKPALIDADSSETLTFSQLKSVVAKLATGFLRLGLTKTD AVLLLAPNTIYFPICFLAATAIGAVVSTANPVYTVPEISRQIKDSNPKLVITVPELWDKVKAFEFKLPTVIIGSNAATSS KTTSLRAVMELAGTVTEQPEVGVKQGDTAALLYSSGTTGVSKGVVLTHGNFIASSLMVAMDDDTEGEVPGVFLCVLPMFH VFGLAIITYAALRRGSAVVSMGRFEFEALLRAVEKHKVTNLWVVPPMVLALAKQSVVGKYDLSSLKYIGSGAAPLGKELM EECARKLPHVSVCQGYGMTETCGVASLENPRVGTRHTGSTGMLASGVEAQIVSVETQKPLPPRQSGELWVRGPNMMKGYH NNPEATKLTLDKKGWVHTGDVGYFDEDGQLYVVDRIKELIKYKGFQVAPAELEGLLVSHPEILDAVVVP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 80 | 80 | - | – | |
| PANTHER | 4 | 469 | 466 | 1.6E-241 | – | |
| PANTHER | 4 | 469 | 466 | 1.6E-241 | – | |
| Gene3D | 9 | 437 | 429 | 1.7E-133 | ||
| CDD | 21 | 469 | 449 | 0.0 | – | |
| SUPERFAMILY | 22 | 469 | 448 | 7.85E-123 | – | |
| Pfam | 36 | 442 | 407 | 1.0E-103 | ||
| Phobius | 81 | 106 | 26 | - | – | |
| TMHMM | 84 | 106 | 23 | - | – | |
| Phobius | 107 | 229 | 123 | - | – | |
| ProSitePatterns | 191 | 202 | 12 | - | ||
| Phobius | 230 | 252 | 23 | - | – | |
| TMHMM | 230 | 252 | 23 | - | – | |
| Phobius | 253 | 469 | 217 | - | – | |
| Gene3D | 438 | 469 | 32 | 5.0E-8 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. |
Expression pattern of LotjaGi3g1v0486700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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