Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0487200 |
| Transcript ID | LotjaGi3g1v0487200.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ABC transporter ATP-binding protein ARB1; TAIR: AT5G60790.1 ABC transporter family protein; Swiss-Prot: sp|Q9FJH6|AB1F_ARATH ABC transporter F family member 1; TrEMBL-Plants: tr|A0A072VMQ2|A0A072VMQ2_MEDTR ABC transporter family protein; Found in the gene: LotjaGi3g1v0487200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:90491284..90496165) extracted from Lotus japonicus Gifu genome v1.2.
CATGATTTAAAAATTTGATACCAACTAAGAAAACTATATAAATTACTACTATACTATTTCATTCTCTTACTTTTGTTTTT CATAATGCCAACAAAACATTGATTGGTTTAGGTAACACCTAATCTCTTGCTTCCTGGTTAGAGCCCCGTCCAAAACGCAA CCACAGTGGAAGAAAGCCACGCAATCACGCACCCTTTTTCTCCAGATTCTAGAGACTACATACATATTCAAAACTCCACT CTCACCACCATCATCAACCTCCAATTCCAATTCCAATTCCCAATCCCTCTCTCCGATAAATCCATCTCCGATCATCTTCT CCTTCTGCATCGAAACCCGAGCCACGATGGTGTCCGAGGCCAGCAAGAAAAAGGCTGCACAAAAGAAGGTCGCCGCCGCC GCTAAAAGAGGCGGCAAGGCTGCTGCTGCCGCCGTAGCCCGCGCAGTTTCTGCCAAAGCTGCAGACAAAGTCGCCGACGC AGTCGCCGATATTCACATATCAGATCGCACATGCACCGGCGTCCTCTGCTCCCACCCTCTCTCCAGAGATATTAGGGTAA GTAACCGCCACAAACTCATCCATCGCTAAGAATTCATTCAGCGAGTTTTGTTTTGAATTGTATGGCAATCACTGATAACA GTTGCTAGATAGCACAAAATTGAACTCAATTGTGAAAATTAGGGTTTAATCTATATAGAACTTTCATTAATTATTGATTA AGATTTTCTTAAGCTTGATAATCATGCATGCGTTATCTAAAATGTGGTGTGAACTGTGAACTGTGAACATTAAGCTTGAT AATAACGATGCATGGGTTATAAAAAATGTGGTGTGAACTGTGAAGTAACATTGCTGGTTTAGTGAGTCTTACATTGTAGC TCATTGTTGCTAGCTTGGGTGAACGTATTTGAGCGCCTAGCCGAGCAGCTGGGTCTGTAGCATCATGGGCATTCTACCAT GTTGCCAAAGGCCAAATACTCACCTAGTACAAATTCTTTCAAGGTAGGTAACATACTAACATTGTAAGTTTGTGCTGTAA GAGGGCATTCCTACCATATCTATTATAACTAATGACTGACTGTTAATGCTGAAAATGGTAATTGTTGTATTGACGCCTTT GGTGGTTTTGTTTTTGTTGCAGATAGAGTCTCTATCAGTCACCTTCCATGGTCATGATCTTATAGTTGATTCTGAATTGG AGCTGAATTATGGAAGGTTTGTCGTTATTACGCAATTGGCGTGAATATGATGCGATAACTTTTACCTGGGGCTTTTACCG ATGTTTGCACTTGTTTTGAATTGATTTCAGGCGTTATGGTTTACTTGGATTAAATGGTTGTGGGAAGTCTACTCTGCTTA CTGCGATAGGTTGTCGAGAACTTCCAATTCCTGAGCACATGGATATTTATCACCTTACCAGGGAAATTGAAGCTTCTGAT ATGTCTGCTTTGGAAGCTGTCATAAGCTGTGATGAGGAAAGGTTGAGATTGGAGAAAGAAGCTGAAGTTTTGGCGGCACA GGTTTGTTTAATCTTTGAACTTTGAAGTAATAAAGCATCTGATTTTGTTCTCGTTTATGCTATTTGATGGCTTGCTAATT TTGTTTGAGTAATTTTGGTTCCAGGAAGATGGAGGTGGTGAAAACCTTGAACGTGTTTATGAACGATTGGAAGCTCTAGA TGCAGCAACTGCAGAAAAGCGTGCTGCTGAAATCTTACATGGTCTTGGTTTCAACAAGGAGATGCAGGCAAAGAAGACAC GTGATTTTTCTGGTGGCTGGAGAATGAGGATTGCATTGTCACGAGCTTTATTTATCAACCCAACCATTCTTCTACTTGAT GAACCAACTAATCATCTTGGTATCATCCCTGCCCTAGAAAGGAAATCTCTTATTAAATGTCTGAATAATTTTTATCACCT CATGTTCCTATGCCCTAAATTGGTTGCGAAAGTCATCTTTGCTTGGATCACTTTATATTAATGTAAAGGTTCTGTTGACG CTTTAAGTTGTCTGAGTCATATTATATCTCAAATAAAAGCATTGATAATTATTTCATCCTTTCTAACCATTTTGGAAAAT GAATGTTGCCGTGTTGGGATTTCTTCCGTATTGAATGGTATAGTAGATGTTTCACATCGTCATGTTTGATTTGGAGTCAT TAATTGTTAGGACCCCATTGCAAGGTATGGGACTTGAGTCCCACATTGGAAGTATGGGATTCTAATGTGGGGTTTATAAG GCCTTGGGCTCTCCAACTACAACAGCTAGCTTTTGTGGTGTGGTTCTCCCAAGGTTCTTATCAATGGTATCAGAGCCTTC CACCATGTCTCTGAGCTGCAAACGAGCGGCGCGGGTGGTGACGCCGGCATTGCAGTGTTCGCCCGGGACTAGTCGTGGGG CTAGTGCACAGCCAGCCCGCGTGGGCGCCGGGGCTGCGGAGCGTGGTGGGATGTTAGGACCCCATTGCAAGGTATGGGAC TTGAGTCCCACATTGGAAGTGTGGGATTCTAATGTGGGGTTTATAAGGCCTTGGGCTCTCCAACTACAACAGCTAGCTTT TGTGGTGTGGTTCTCCCAAGGTTCTTATCATTAATGCCAGACCCAATCATGCTTCTTGTTATTTATGCTTTATACTGTCT TATATCATGTTATGCAAAATTTCTCCACCCTCCTCTCGTGTCTGGTCATATGCATTATCATTTTGTTTAATGTGGGGCAT ATTTCTACTAGTGCAACTGATGCAATATTTACGAAGGTAGTTAGGCACTTCTCTTGTCATACTTTCAAATTAAATTCCAT TTACTTGTTTTGTGTGTTTCTAGTTGATATATGCGGGTTGTTCTTAACTGTTTTGTTGGTGGGTGGGGGGTGTCTACATC TTTGATCTTTGAACTTTTTTACATATTTCAATTTCTTTTAATCTGTTTGCAGATTTGGAAGCTTGTGTGTGGCTGGAGGA GAACTTGAAGAAGTTTGACCGTATTCTGGTTGTGATTTCACACTCTCAGGACTTCCTTAATGGTGTATGCACTAATATTA TCCACATGCAAAACAAAAAGCTGAAGTTCTACAGTGGTAACTACGATCAATATGTTCAGACACGTACTGAGTTGGAAGAG AATCAGATGAAGCAGTACAGGTGGGAGCAAGAGCAGATTGCCTCAATGAAGGAATATATTGCCCGATTTGGTCATGGTTC AGCAAAACTAGCTCGCCAGGCACAGAGTAAAGAGAAAACACTGGCAAAAATGGAACGAGGTGGACTTACAGAAAAGGTGG TCAAAGACAGAGTTTTGGTGTTCCGTTTTACTGATGTGGGAAAACTTCCCCCTCCTGTTCTGCAGTTTGTTCAGGTGACT TTTGGTTACTCTCCTGACAATCTCATCTACAAAAACATTGACTTTGGGGTCGACTTAGACTCTAGGGTTGCACTGGTTGG ACCCAATGGTGCTGGAAAGAGTACACTGCTGAAGTTAATGACAGGTGATTTGATTCCTAATGATGGCATGGTCCGGCGCC ATAATCATCTTCGAATTGCACAATTTCACCAGCACTTGGCTGAGAAGCTAGACTTGGAGTTGTCTGCTCTCCAGTTTATG ATGAAAGAATACCCTGGAAATGAGGAAGAGAGAATGAGGGCAGCTATTGGGAGGTTTGGGCTGTCAGGTAAAGCCCAGGT GATGCCCATGAAGAACTTGTCAGATGGGCAAAGGAGTCGAGTGATATTCGCGTGGCTAGCTTGGAGGCAGCCTCATCTGC TACTTCTGGATGAGCCAACTAATCATTTGGATATCGAGACAATCGACTCATTGGCTGAGGCATTGAATGAATGGGACGGT GGCATGGTGCTTGTTAGCCATGATTTTAGGCTCATAAACCAGGTGGCCCATGAGATATGGGTGTGTGCTGATCAAACTGT GACCCGCTGGGACGGTGACATTATGGCTTTCAAGGAGCATCTAAGGTCAAAGGCAGGTTTATCTGACTGAAGCTGATTGG GGCTTATGCAGATAATGTGACATTGGCTTTGTCCTATATATCTTAGAACTTATTGGGGAGTGCTGCCATTTTGAGTTGGA TTTCTCTCAACCGTGATGATTGTTCAGTTCAATTGCAGGATTGGTGCAGACAGATAAGCTACCAGCTAGTTATGATGTTT GTTAAGCCGAGAGATCTTTTTGACACGCAGACCTGTTAGACTGGCAAAGACTTTCTCTTGATTATCAGTTATTGTGCCTA TCATTTGATTGCTTGGTTGTTGACCAGCATGATGGATAAAATGGGACATCAATCACCTTCTGGTAGAGGTGATCCCTATC TCAAATCTATGATCAGACTTGATCTATAATGATGTATTAATGATATATTGTACTGAGAATATTATGTTTGTGGTATTAGT ATTTAGTAGCAACTATAAGTTTCTTCACTGGGTTATTTCTTCCTAATTTCTCTTCATTAGTCATCTAACCTTTGCCATTT TACTTTCTTCCACTCTCGTTAAAGGGAAAGATAACGAGTACAGCCTTTTCCTTTGTGTGTCACAAATTGCAGTAAGAAGG TGGCCAAATGAGGAAATCACCCAAGTACTTGGAGTGGCTCTCCATAGCCTTTATGTGCATCTATCTTTGGATAAAAGTCT GTATGAACAGATAGGGAGAGACGGGATCTCCCAGTCTCAATCATACTTGGGGTAGAGTTTTTCACATGGGGAGCCATTAA GGAGGGGTGGATAAGGTTATAGATGAAACACCTATAATCTGAGACTAAAGAAGTGTTTAGGTTCAAGTTATGTATTGTAT TTTGGTGTTCTTGGAATTAAGTAAAAGAACACCCAGATTAAGCTTTGAGTAAACAATAATCAACCATTTATTTAATTTGA GG
CDS sequence (LotjaGi3g1v0487200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGTCCGAGGCCAGCAAGAAAAAGGCTGCACAAAAGAAGGTCGCCGCCGCCGCTAAAAGAGGCGGCAAGGCTGCTGC TGCCGCCGTAGCCCGCGCAGTTTCTGCCAAAGCTGCAGACAAAGTCGCCGACGCAGTCGCCGATATTCACATATCAGATC GCACATGCACCGGCGTCCTCTGCTCCCACCCTCTCTCCAGAGATATTAGGATAGAGTCTCTATCAGTCACCTTCCATGGT CATGATCTTATAGTTGATTCTGAATTGGAGCTGAATTATGGAAGGCGTTATGGTTTACTTGGATTAAATGGTTGTGGGAA GTCTACTCTGCTTACTGCGATAGGTTGTCGAGAACTTCCAATTCCTGAGCACATGGATATTTATCACCTTACCAGGGAAA TTGAAGCTTCTGATATGTCTGCTTTGGAAGCTGTCATAAGCTGTGATGAGGAAAGGTTGAGATTGGAGAAAGAAGCTGAA GTTTTGGCGGCACAGGAAGATGGAGGTGGTGAAAACCTTGAACGTGTTTATGAACGATTGGAAGCTCTAGATGCAGCAAC TGCAGAAAAGCGTGCTGCTGAAATCTTACATGGTCTTGGTTTCAACAAGGAGATGCAGGCAAAGAAGACACGTGATTTTT CTGGTGGCTGGAGAATGAGGATTGCATTGTCACGAGCTTTATTTATCAACCCAACCATTCTTCTACTTGATGAACCAACT AATCATCTTGATTTGGAAGCTTGTGTGTGGCTGGAGGAGAACTTGAAGAAGTTTGACCGTATTCTGGTTGTGATTTCACA CTCTCAGGACTTCCTTAATGGTGTATGCACTAATATTATCCACATGCAAAACAAAAAGCTGAAGTTCTACAGTGGTAACT ACGATCAATATGTTCAGACACGTACTGAGTTGGAAGAGAATCAGATGAAGCAGTACAGGTGGGAGCAAGAGCAGATTGCC TCAATGAAGGAATATATTGCCCGATTTGGTCATGGTTCAGCAAAACTAGCTCGCCAGGCACAGAGTAAAGAGAAAACACT GGCAAAAATGGAACGAGGTGGACTTACAGAAAAGGTGGTCAAAGACAGAGTTTTGGTGTTCCGTTTTACTGATGTGGGAA AACTTCCCCCTCCTGTTCTGCAGTTTGTTCAGGTGACTTTTGGTTACTCTCCTGACAATCTCATCTACAAAAACATTGAC TTTGGGGTCGACTTAGACTCTAGGGTTGCACTGGTTGGACCCAATGGTGCTGGAAAGAGTACACTGCTGAAGTTAATGAC AGGTGATTTGATTCCTAATGATGGCATGGTCCGGCGCCATAATCATCTTCGAATTGCACAATTTCACCAGCACTTGGCTG AGAAGCTAGACTTGGAGTTGTCTGCTCTCCAGTTTATGATGAAAGAATACCCTGGAAATGAGGAAGAGAGAATGAGGGCA GCTATTGGGAGGTTTGGGCTGTCAGGTAAAGCCCAGGTGATGCCCATGAAGAACTTGTCAGATGGGCAAAGGAGTCGAGT GATATTCGCGTGGCTAGCTTGGAGGCAGCCTCATCTGCTACTTCTGGATGAGCCAACTAATCATTTGGATATCGAGACAA TCGACTCATTGGCTGAGGCATTGAATGAATGGGACGGTGGCATGGTGCTTGTTAGCCATGATTTTAGGCTCATAAACCAG GTGGCCCATGAGATATGGGTGTGTGCTGATCAAACTGTGACCCGCTGGGACGGTGACATTATGGCTTTCAAGGAGCATCT AAGGTCAAAGGCAGGTTTATCTGACTGA
Protein sequence (LotjaGi3g1v0487200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVSEASKKKAAQKKVAAAAKRGGKAAAAAVARAVSAKAADKVADAVADIHISDRTCTGVLCSHPLSRDIRIESLSVTFHG HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGCRELPIPEHMDIYHLTREIEASDMSALEAVISCDEERLRLEKEAE VLAAQEDGGGENLERVYERLEALDAATAEKRAAEILHGLGFNKEMQAKKTRDFSGGWRMRIALSRALFINPTILLLDEPT NHLDLEACVWLEENLKKFDRILVVISHSQDFLNGVCTNIIHMQNKKLKFYSGNYDQYVQTRTELEENQMKQYRWEQEQIA SMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDRVLVFRFTDVGKLPPPVLQFVQVTFGYSPDNLIYKNID FGVDLDSRVALVGPNGAGKSTLLKLMTGDLIPNDGMVRRHNHLRIAQFHQHLAEKLDLELSALQFMMKEYPGNEEERMRA AIGRFGLSGKAQVMPMKNLSDGQRSRVIFAWLAWRQPHLLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQ VAHEIWVCADQTVTRWDGDIMAFKEHLRSKAGLSD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 38 | 38 | - | – | |
| PANTHER | 2 | 595 | 594 | 0.0 | – | |
| PANTHER | 2 | 595 | 594 | 0.0 | – | |
| Gene3D | 57 | 322 | 266 | 1.3E-50 | – | |
| SUPERFAMILY | 62 | 313 | 252 | 5.33E-40 | ||
| CDD | 69 | 286 | 218 | 4.40521E-44 | – | |
| ProSiteProfiles | 69 | 309 | 241 | 15.126 | ||
| Pfam | 87 | 241 | 155 | 1.6E-21 | ||
| SMART | 93 | 286 | 194 | 2.0E-6 | ||
| ProSitePatterns | 213 | 227 | 15 | - | ||
| Pfam | 280 | 352 | 73 | 1.4E-22 | ||
| Gene3D | 345 | 593 | 249 | 2.3E-51 | – | |
| SUPERFAMILY | 363 | 575 | 213 | 1.05E-41 | ||
| ProSiteProfiles | 380 | 595 | 216 | 15.06 | ||
| CDD | 380 | 572 | 193 | 1.99794E-52 | – | |
| Pfam | 396 | 527 | 132 | 5.1E-23 | ||
| SMART | 405 | 593 | 189 | 2.2E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Molecular function | ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. |
Expression pattern of LotjaGi3g1v0487200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…