Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0492600 |
| Transcript ID | LotjaGi3g1v0492600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 30S ribosomal protein S4; TAIR: AT5G15750.1 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein; Swiss-Prot: sp|P32899|IMP3_YEAST U3 small nucleolar ribonucleoprotein protein IMP3; TrEMBL-Plants: tr|I3SIJ8|I3SIJ8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0492600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:91083876..91087173) extracted from Lotus japonicus Gifu genome v1.2.
TATATTCTTCTCTATTTCTCTTTAAATCCAAAATAGGGTTTTATGCTACTCAACCCCATACCCAACAACTCTTCCTCCTT CCCCAACACAACACAACACAACACAACACAACACAAGCGCGCACTGCTCTCAGACCCGCTCTCCCCTCAGAAGCAAGAAG ACGGTTGGTTTTCATCTTCAACAGTGAAAAACAATGAGGAAGCTAAAGTTCCATGAGCAGAAGCTTTTAAAGAAGGTCAA TTTTTTGGAATGGAAGAGAGAAGGAGGTCACAGAGAGAACCTCGTTATGCAGCGCTACCACGTTACTGGACGGGATGATT ACAAAAAGTAAGTATCATCATAATTCATCATATTTATATTCGCTAATTTCCTTTATTTAGTTTGTTGGTTTTGGCTGATA CATTTTCTTGATTGAAATATGAATAGATATTCAAGCTTATGCGGAATGGTTCAGAAGTTGGTAAACATATTGAAACAGAT GGACCCCAAGGACCCTGTTCGGGTCGATATGACTGATAAGCTTTTGGAAAAACTGTAAGTTCACTTTAACTAACTCGTTC TATATAAACTTTTAGGCATAAGATTTCCCCTATTCAGTTTTATTCTTCAATGTTGTTGTAAGACCCCTCAAATCTATCTG TGCTTAAGCTTTCATTTTAACTGGTATGCATTTGGCTATCTAAATTCAATTAACTCAAGTTGCATATACATATAAATTGT TGGATGGTTTTTGTTGATCAATTATAATTTATCATATAAACAATTAATGTATGTGATCGAATGAAAAATGATAAAAATAT GTAACCTCTTGCAATTTCACTTTGGTTCTTTTGGCTCTTCCTCAAGACCATGGGTTTGTTCATGTCAAGAAGTATCGTCC TTCCAGTTTCAATTTGAATCACTGTCCTGGTCGAGGGGCCTCTTTCTTTTTTGTTTCTTCTTGGTATTAGTTTGAACTAA AAAGATGTAAGTATGTGTTATAAACTACTTACACATATCTGTTTCTTTCTTTTGTGTTTGAATGACAGTTACAACATGGG TGTGATTCCAACCAGGCAAAGCATCACACAATGTGAACACTTAACTGTTTCATCCTTCTGTAGGTAAAAAGATAACTTTG CTGCATTTGTTGCTTTAAATCGAAATTTAAATGTTAACTTTATTTGGTTTCTCATTAGAATGTTTATGTGAAAATATAGC AATAGAAAGAAGCAAAATGATATTTGATTTTTAAGACGACTCTATTAAGACTCAAGGACTAGGAGCAAACACATTAATTG CCATCTATAAGTGTTACTATTCAAAGCTCTGGCTCCAGAGTTGTGATTAAGCAAAGGAAAAGAGAATGGAGAATTTTATA TTGCTAAATACTGGTCTCATGGGATACTTGTATTGTAACACTAACATCCGAACCTTTAAAGGTGATTAAATAATATAATT TTAAGAAAATATATCCATAGGGATTAGTTAAAATATTATGAGCTAAAATAAGTTAAAACAAAAGTAATAGGAGTATTAAG TATAATGAGATTGTACGAACAAAACTGTTGAAATTTTACCAATGGTGATTGAGTCATGCGTGTAAAATAACTGTATATCA TGAACCCATGCGTGTGCATCTTGAAACCTCAAACTTAAAGTTCCTACCAAACTCAAATTTTTGGTTCATTCTACTCTGTC TGCTCATGGTTCCATTTTTGTGTCGTGTTGTAAGTTCCAAGCTGTTAGGCTAGGATTTTTGTTATTAAATTCTGAACCAC ATCTGAGATGCTTACTGTATGTTGTTCTTTTTTTTTGAAACACTTTATATTGTTCTTTTTCCCTGTGAAGTTATATGGTT TTAGATTAAGTAAGGATGGGAAAGAAACTTAGCCTTTAAATTGTGATTATGGTTTGATATTATAAAAAGGGCAGACAGAT GGAAATCTTAAATGATGTCTCAATTTTCTGTCCCACCAATTAAATTTTGACATGTTATATTCTTACTTTTGCCATCATCC ACCATCCCAGACAAACATCAACTTACAATCCAGCTCCTCTTCCTCTTTATTGGCCTTCTTAGCTTCCAAAGTCACTATCT CACCATCATAGTCATATGTCTTATTCTCATCCATCTCCAGCAACAACAATTCTCTCCTGTGCATTGGCACAATGGATGAT ATTTGTCACCACAGTGAAAACAGAATCCCTTTGCCCTCCTCTCCATCAGCTCTGGATGAGAAATGTGAAATATGTCAAAC TCCTTTCAATTTGTCAGACACAGCCCTCCGGTCACCCTCCTTTTGCTTTGCCATTAATTACGTTGCGGAGGCAATAGGCT TCTTCTAGGAAGCTCTGTAAAAAATCCCTTCTTGTGTCCCAGTGCTATAAAAGATCTTACACTATACACCTTAAATCTCT TACTCCATTTTATTTTAATTCCCAAATAGCTGAGTAGTGAGTATTGATCAGTGCTATAAAAGATCTTACACTATACACCT GAAATCTCTAACTCCATTTTATTTTAATTCCTAAATAGCTGAGTTGTGAGTATTGATCAAACTGATAAGCTGGTTAGTTT AACTCCTAAACTAGTCATGCCAGTGAGAGTTCCTTTATAACAAGAGTAGACAAAAAATAGTAGATTTTCTTTTTACCTCT ACTTTCTATTGTATTGATCTCATTTTGTTCCTGATTATGACTGAACTTTCTTTATGTTTCAGGCGTAGGCTCTCGACTGT TTTGGTGCGACTAAAATTTGCTGAGCACTTGAAAGAAGCTGTGACGTATATTGAGCAGGGGCATGTGCGAGTTGGTCCAG AGACAGTTACAGATCCAGCTTTCCTTGTAACTAGAAACATGGAAGACTTTGTGACATGGGTGGATTCATCCAAGATAAAG AGAAAGGTGCTTAAGTACAATGACAAGTTGGACGACTATGATATAATGAATTAAGGGGAAAGCCTAGGGCTTTGGCTTAT TGTGGGTAGAGCAATTTCTTGTTATAGACGTGGGTGAATGAAGACTACATAGAATTGTAGGATGAGTTTGTGTTCTTTTT TTCTTTGCGGTTATTCTAGGAAAGCTTGGATTTTAACTGGTTATTTTTAATTCCATATTAAGATTGTGTAATGAACCTAG AATCTAGTGCATCGTGATCCATGATGGTGGTGTTAAATCTTTAAAATATGTATTTTGCATTTTCAGTGGATGATGAGCCA TTGTATTTGATCTGGAATTGGATACAGAGTAAAGGATTTGCAAGAACAAAAGTCTAAATCGTACTTTCAACTAGCTAAGC TAGTAATTTACAACGTAG
CDS sequence (LotjaGi3g1v0492600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGAAGCTAAAGTTCCATGAGCAGAAGCTTTTAAAGAAGGTCAATTTTTTGGAATGGAAGAGAGAAGGAGGTCACAG AGAGAACCTCGTTATGCAGCGCTACCACGTTACTGGACGGGATGATTACAAAAAATATTCAAGCTTATGCGGAATGGTTC AGAAGTTGGTAAACATATTGAAACAGATGGACCCCAAGGACCCTGTTCGGGTCGATATGACTGATAAGCTTTTGGAAAAA CTTTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACAATGTGAACACTTAACTGTTTCATCCTTCTGTAGGCG TAGGCTCTCGACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAAAGAAGCTGTGACGTATATTGAGCAGGGGCATG TGCGAGTTGGTCCAGAGACAGTTACAGATCCAGCTTTCCTTGTAACTAGAAACATGGAAGACTTTGTGACATGGGTGGAT TCATCCAAGATAAAGAGAAAGGTGCTTAAGTACAATGACAAGTTGGACGACTATGATATAATGAATTAA
Protein sequence (LotjaGi3g1v0492600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRKLKFHEQKLLKKVNFLEWKREGGHRENLVMQRYHVTGRDDYKKYSSLCGMVQKLVNILKQMDPKDPVRVDMTDKLLEK LYNMGVIPTRQSITQCEHLTVSSFCRRRLSTVLVRLKFAEHLKEAVTYIEQGHVRVGPETVTDPAFLVTRNMEDFVTWVD SSKIKRKVLKYNDKLDDYDIMN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 181 | 181 | 1.6E-87 | – | |
| PANTHER | 1 | 181 | 181 | 1.6E-87 | ||
| SMART | 3 | 106 | 104 | 1.5E-26 | ||
| Pfam | 3 | 62 | 60 | 5.7E-8 | ||
| SUPERFAMILY | 26 | 175 | 150 | 4.71E-18 | – | |
| SMART | 107 | 170 | 64 | 6.5E-8 | ||
| CDD | 107 | 175 | 69 | 6.49123E-8 | ||
| ProSiteProfiles | 107 | 173 | 67 | 11.982 | ||
| Pfam | 107 | 153 | 47 | 2.7E-11 | ||
| Gene3D | 108 | 180 | 73 | 1.1E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Molecular function | RRNA binding | Interacting selectively and non-covalently with ribosomal RNA. |
Expression pattern of LotjaGi3g1v0492600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…