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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0495100 |
| Transcript ID | LotjaGi3g1v0495100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Leucine-rich repeat receptor-like protein kinase family; TAIR: AT3G20820.1 Leucine-rich repeat (LRR) family protein; Swiss-Prot: sp|Q00874|DR100_ARATH DNA damage-repair/toleration protein DRT100; TrEMBL-Plants: tr|G7JR58|G7JR58_MEDTR Leucine-rich receptor-like kinase family protein; Found in the gene: LotjaGi3g1v0495100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:91324620..91326215) extracted from Lotus japonicus Gifu genome v1.2.
CTCATATGCTAGCAGCTAGCTAGCTTCCCCCAAAAAATCAACTAAAATCAATCCTTATATCACAAGCATAGCATAAAGTC CATAAATAATTTATATATATACATGCACAAACCAATCTATTGTTAAATAGCAATTGCAGTACTTAATTTGCATGCACATG CATCAAATCAATTAATAAATTAACAATGGATGATAGTGTTAGAGCAGTTTTTGTCATGTCACTAGTAGTGACCCTTCTAG TGGCTCTTGATCCCACACTTGTTGAGTCATGTCCTCCTTCTGAATGGGCATCACTCATGGCCTTCAAAGCAGCTCTCCAA CAACCCAACTTTGAAATCTTCCATTCATGGAGAGGCACTAACTGCTGCTACCACTGGTACGGCATCAGCTGCGACCCCAC CACCCGCCGCGTCGCGGAGATCACCCTCCGCGGCCTCACTGTCTCCGACGACTACAACCACCACCGCCTCCCCCGCCGCC GCAACAATAACAGTGCAGGATACATGACCGGATACATCTCCCCATCAATCTGCAACCTCACGCAGCTCTCCAGCATTACA ATCTCCGACTGGAAGGGCATTTCAGGAACTATCCCTGGCTGCATCACCACCCTCCGTTCTCTCCAAACCATAGACCTCTC CGGGAACCTCATCACAGGGAAGATTCCGTGGGACATAGGGAGCCTCACGCAGCTCACCGTGCTCAACCTCGCAGACAATC ACATCTCTGGATGGATCCCAAAGACGCTGGTGAACCTCTCCAACCTCATGCAACTGGATCTTCGGAACAACGCAATAAAG GGCCCGATTCCGTGGAACATGGGCCAGCTCAGAAAGCTGAACCGGGCCTTGTTAGGCCACAACCGGATAACCGGTTCAAT TCCAAGGTCGATTGCCAGCATTTACTCGTTGGCGGACATCGACCTTTCTCTGAACCGGTTATCCGGTTGGATTCCGGCCT CATTAGGTCGGATGCCGGTCCTAGACTCGCTGAACCTGAAGTACAACAACTTGACGGGGAGGATTCCGGGGACCCTGCTG GCTTCTAGAATGAGTCGTTTGGATCTGAGCTGGAATGCATTGAGTGGACACATTCCAGATGTGTTCGGAACAAACACTTA TTTTTTAAACCTTGATTTGTCGCACAACTTCTTGAGCGGTTTCGTTGCGAAATCTATGGCGTTTGCATGGTACATTGGCT ATGCGGATTTGAGTCATAATCGTTTGTGTGGCCAGATTCCACGTGGACCTTCTTTCGATCATCTTCCGCCACGAGCATTT CAGCACAATCAATGTCTCTGTGGCATGCCGCTTAAACCATGCGTTCATCGTAGTTCACACACGTGAGATTGGGTGCGTGA CCGATGATGAAGATCACATATTATATTTACATCACATATCAATTTATCACTATTATAATATCTATATAAAAAAATTGTGG TTCACCTATGCTTATTGAAAGACAAATTAAAGGCTGTGGTTTCATCTTTCAGCCTCTACCTTCCGCATCTTTCAACTCTA AATGATGTGTTTGTAAGATGCTAAACAAGCTTGCTGCATGCTTCAGATATTCTATATATGTTTGTTTTAAATGGGA
CDS sequence (LotjaGi3g1v0495100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGATAGTGTTAGAGCAGTTTTTGTCATGTCACTAGTAGTGACCCTTCTAGTGGCTCTTGATCCCACACTTGTTGA GTCATGTCCTCCTTCTGAATGGGCATCACTCATGGCCTTCAAAGCAGCTCTCCAACAACCCAACTTTGAAATCTTCCATT CATGGAGAGGCACTAACTGCTGCTACCACTGGTACGGCATCAGCTGCGACCCCACCACCCGCCGCGTCGCGGAGATCACC CTCCGCGGCCTCACTGTCTCCGACGACTACAACCACCACCGCCTCCCCCGCCGCCGCAACAATAACAGTGCAGGATACAT GACCGGATACATCTCCCCATCAATCTGCAACCTCACGCAGCTCTCCAGCATTACAATCTCCGACTGGAAGGGCATTTCAG GAACTATCCCTGGCTGCATCACCACCCTCCGTTCTCTCCAAACCATAGACCTCTCCGGGAACCTCATCACAGGGAAGATT CCGTGGGACATAGGGAGCCTCACGCAGCTCACCGTGCTCAACCTCGCAGACAATCACATCTCTGGATGGATCCCAAAGAC GCTGGTGAACCTCTCCAACCTCATGCAACTGGATCTTCGGAACAACGCAATAAAGGGCCCGATTCCGTGGAACATGGGCC AGCTCAGAAAGCTGAACCGGGCCTTGTTAGGCCACAACCGGATAACCGGTTCAATTCCAAGGTCGATTGCCAGCATTTAC TCGTTGGCGGACATCGACCTTTCTCTGAACCGGTTATCCGGTTGGATTCCGGCCTCATTAGGTCGGATGCCGGTCCTAGA CTCGCTGAACCTGAAGTACAACAACTTGACGGGGAGGATTCCGGGGACCCTGCTGGCTTCTAGAATGAGTCGTTTGGATC TGAGCTGGAATGCATTGAGTGGACACATTCCAGATGTGTTCGGAACAAACACTTATTTTTTAAACCTTGATTTGTCGCAC AACTTCTTGAGCGGTTTCGTTGCGAAATCTATGGCGTTTGCATGGTACATTGGCTATGCGGATTTGAGTCATAATCGTTT GTGTGGCCAGATTCCACGTGGACCTTCTTTCGATCATCTTCCGCCACGAGCATTTCAGCACAATCAATGTCTCTGTGGCA TGCCGCTTAAACCATGCGTTCATCGTAGTTCACACACGTGA
Protein sequence (LotjaGi3g1v0495100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDDSVRAVFVMSLVVTLLVALDPTLVESCPPSEWASLMAFKAALQQPNFEIFHSWRGTNCCYHWYGISCDPTTRRVAEIT LRGLTVSDDYNHHRLPRRRNNNSAGYMTGYISPSICNLTQLSSITISDWKGISGTIPGCITTLRSLQTIDLSGNLITGKI PWDIGSLTQLTVLNLADNHISGWIPKTLVNLSNLMQLDLRNNAIKGPIPWNMGQLRKLNRALLGHNRITGSIPRSIASIY SLADIDLSLNRLSGWIPASLGRMPVLDSLNLKYNNLTGRIPGTLLASRMSRLDLSWNALSGHIPDVFGTNTYFLNLDLSH NFLSGFVAKSMAFAWYIGYADLSHNRLCGQIPRGPSFDHLPPRAFQHNQCLCGMPLKPCVHRSSHT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 28 | 28 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| SignalP_EUK | 1 | 28 | 28 | - | – | |
| Phobius | 1 | 28 | 28 | - | – | |
| Phobius | 7 | 20 | 14 | - | – | |
| PANTHER | 12 | 379 | 368 | 7.0E-133 | – | |
| PANTHER | 12 | 379 | 368 | 7.0E-133 | – | |
| Phobius | 21 | 28 | 8 | - | – | |
| Gene3D | 27 | 101 | 75 | 2.1E-7 | ||
| SUPERFAMILY | 28 | 379 | 352 | 3.91E-58 | – | |
| Phobius | 29 | 386 | 358 | - | – | |
| Pfam | 32 | 70 | 39 | 1.0E-6 | ||
| Gene3D | 102 | 383 | 282 | 1.4E-77 | ||
| Pfam | 120 | 180 | 61 | 6.2E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0495100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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