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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0497500 |
| Transcript ID | LotjaGi3g1v0497500.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT2G31510.1 IBR domain-containing protein; Swiss-Prot: sp|Q84RR0|ARI7_ARATH Probable E3 ubiquitin-protein ligase ARI7; TrEMBL-Plants: tr|A0A0L9V731|A0A0L9V731_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0497500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:91624817..91632430) extracted from Lotus japonicus Gifu genome v1.2.
GGGAAAAAAACAAAAACAGAAAGAAACCTTCAACCAACAACACATATTCTTCTTCTTCTTTCTTCTTCTAATTGTTATTC TGATTCCCAATTTCAGTGACCTAGATTTTCTCTCTCTTCATCATCTTCCATCGCCTATCAAATTAGGGTTCCTTCTTCTT TCTTCTTCCAATTTCCATGGACTCCGAGGATGATATGCACGATGCCAACGACGTTGAGTCTTTCGACGACGATTTCTACA GTGGCGACGCGGAGGAAGCTCCCTTGGACTACTACAGCGACTACGATGACGACGCCGATGATTACTTCGACGATTCCGAT AGGATTGAGTCTCGTTGCCCTGAGGTTTCATTTCTTTTTCCCCCTTTTCCGATTCCATCAATTTTTCATTCAATGCGGTT CGCTTTCAATGTTTACACGATTTCTTCCCCTTTAATTTTAGGAATTTTGATGAAAAAATAGTTTTTTTTTTCTTCTGGGT TTTGCATGAATTGGATGTGAGTCCTGCAATTTCTACCAATTGCTATCTAATTATGGATAATTGTTTGGGTTTCAGCACAA TTTTACCATCTTGAAGGAATCAGATATTCAGCTAAGGCAGGAAGAGGATATCAATAGAGTAGCAGGGGTTCTTTCCATAT CAAGAGTTGCTGCAAGCATACTACTTCGTCACTACAACTGGTAAATTCATTTTTGTATCTCTGTATGACAGTGATTTTGC CATCATCTTTAGTGTTTCAACTTTTAAAACATTCTTTTTTTATGATATAACATTGGTGAATTTTGGGTTGCCATTATGAA TTTTGAGTTTAAGTTTACTATAATGACATGAATCATGAGTTATTTTCCTTATCTATGGGATTTTCTATGTGTATATTTTA CTAAGTATACTTTTGCATATGTAGTAGGATCTTATGACAGTGATTGTGCTTGCCATGTTCAGTGCTTCAACTTTTAAAGC GTTATTTCTTTTTATGCGGCATTTGTATGATATAACATTGGTGAATTTGGGGTTGCAGGAGCGTCAGTAAAGTGCATGAT GCTTGGTTTGCTGATGAAGAGGGAGTTAGGAAAGCAGTTGGCTTGTTAGAGAAGCCAGTTGTAGAGTATCCTAATGCTAG AGAGGTGAGATATGGTTGGTCTGGTTCTAAGTCAATAATGTAGTTGGATTTTTATTTTCTCCAGCTGCTGGGGTTATATT TGTATTTCATTTTCTTTTGTTCTTGGTTTCTTCTGTGGCCAGCTTACATGTGGCATCTGTTTTGAAAACTATCCTCGTGC TAGGATTGAAGTGGCTTCTTGTGGTCATCCCTACTGTTTCTCATGCTGGGAAGGTGTGTTTTCTTTGCTATTACTCTATT CTTCTGTGACCTTAGTTATAATCTGGACATTGAGCTGAATTTTTGCCTTTGTTTTTAATCTTGGGTGATAGAATATGCAT TTTGGTTTGTTTTTTCTGTCTTATAATCTTACTTCTGTCCTTTTCAATATGCTAGGATATATTACCACATCCATTAATGA TGGTCCTGGGTGTTTGATGCTGAGATGTCCCGATCCCACTTGTAGTGCGGCTGTTGGTCAAGATATGATTGATCTATTAG CATCCAATGAAGATAAACAAAAGTATGCCCGTTACCTTCGTAGATCTTATATTGAAGACAATAAGAAGGTATGCACTAGA TATGGAATTATGACACTTATAATGATAGTGAAGGGAATTTTTACTTTTCTTTATACTGCAAATTGAAATCCATGTCACTA TAACTATATGTGGCCCATTATTTATTTTCATTACGTGTTCCTGATTCTTTGAATATTGAATGAATTCTTTGTTATATTGG TAAAGTGGGATAATATATGTGATTAAAAACCTACACTACTTTTCTGATCATTCATATTTTTTTTTTGATATATTGGTAAA GTGGGATAATATATGTGATTAAAAACCTACACTACTTTTCTGATCATTCATTTTTTTTTTTTTTGATAATGATCATTCAT AATATCTTTGTCTCACTAGTTGATTGTCATAATAACTTTTGTTTGTCTAGTCAAAGTGGTGTCCTGCTCCTGGATGTGAA TATGCAGTTACTTTTGATGCTGGTAGCGGAAATTATGATGTCTCTTGCCTCTGTTCATATGGCTTTTGTTGGAATGTAAG TTGCATATGGATTTCTTCTATTTATTATAGTGCTGGATTTTAGACTCTTCTGTTTGTTCTGCTGATTAATGTGTCTTTGG ATCTGCAGTGCACCGAGGAGGCTCATCGTCCAGTGGACTGTGGCACCGTAGCAAAGTGGATTTTGAAAAACAGTGCAGAG TCCGAAAACATGAACTGGTACGGATTTCTGGAAGGATTTTGCACATACTGTTTTCTTTTAGTACTTGAAGGAATGTGGTG TTCTTAGGAATTGAGTCATCTTGTACTTAAAGTAGACACTGAAAATGGAGAGTATGGCGTGAAAAGAAGAGTTATCCAGA TTTTCATTTTTGAATCAAATTACATGTTGGCTAAAGGGGTGGGACCGTGGGAGTCATTACTTCATTCGTAGGAATGGAAG ATATAAAACATGGAACACTTATGTGCTTAGTGTTTGGACTTTGTTTATAATTTACCAGATCAATCCATAATCCATGGGGT ATTAGAACTCTACATTCTCTTGGTCTCCTTTAGGATCATTGAGCTGCTTCGTTGACTTGCATTTCTCTAATCAGTCAAGG ATAAATTGTGGCTTTATTGGATTGTGGAGTTTTGAGAACCTGAGCTTACTGTTAATTTAATGACTTTCAGGATACTTGCT AACTCAAAGCCATGTCCCAAGTGCAAGCGACCGATTGAAAAAAATCAAGGATGCATGCACATGACATGCACTCCTCCATG TAAATATGAATTTTGCTGGTATGCAATTTCCTTTACCCCTGGGTCCACTCTCATAATTTTTAACATAATTAAATTTGATG CTGCAATTAGATCTTATCTTTCGTCTTGTTTGCCCATTATCATTTGTTGAATGTTAATCATGCAAATTTTGGGCTTATTT TTCTTTCCTGGGCATGTAATTTGAACAGTTTCCGATTTTTTTTGGGGGTTGCACCTTAACACGTATTACCATGTTTTCAA ACAAATTGACCTTATATGAATTTAATACATTTTACCTATGTAGGCTATGCCTTGGTGCATGGTCAGACCATGGTGAAAGA ACTGGTGGTTTTTATGCTTGCAATCGTTATGAAGTAGCTAGGCAAGAGGGAGTGGTAAGGGACATAAAAATACTGTGCTT CTGTTGATTCAGGTTTTGGGCTACAATTAGCTCACTGTTCTGTCCACATGCATTCGGATAATTATATATGCTTATGAACT AAATTTTGGTACATGTAGTATGATGATTCTGAACGAAGAAGAGATATGGCAAAGAATTCATTGGAGAGATACACACATTA TTATGAGCGGTGGGCCAGCAACCAAACTGTATGCACCACTCTATACTTAATGTTCACTACTCATGTCTTAGAATTTAGGA ATCTGTCTTCTTCTACAATTTCTGAATTCTTTCTTCAATAGTTTGTATATGGACAGCTAAATGACTAGTTATAACTATAT TATTATTTATTTCATTGCATGGTGTTTTCAATCATAAGCTTCAGCCCTATTTGTTCATTATTGTTAGAGATGTAAATCAA AAGAAAACCATTTAGTAATATTTCGTAACAGGTCAAGTTTTTAGTATAGTTGCTCTATCAGGAACCCTTTGACCAAGTGA TGTAGAATGGGTATTCCGAGAGTGCTCTTGCTCCTTCTGGCTGAGGTGTTCTTTTGATAAAACCCTAGAGCACTGTTCTT GGCCTCTTGGGTGGGCAGTCCCTTGATAAACCTGATATACTCATTTAGATGCAGAACAGTTTGTCATCGTGGGATCGTGC GATCTCTCTTAGGGTTTGCAATCTGGATCGTGGCTGGGATCACAGAAGCGTGTGGATCATGGTCCTTTGGGGATAGGATC GTAGGATCTCAATTCAATCTTATTCTCAGAATAGGGTTTGCGATGCGGGCTTCCAAGTTTCGGCCCAAAAGATGACCCAT TTTTTACATAAGCCTTTCTCGTCTCTGCAGCGACCAGACCCTAAGTCGACCTGGACTGTTGCTTCCTTCCACCGTCGACA TCCACGCACTGGCTCATGATCCCAGCAACTGACTGCCACGTGTTGGTCTGAGCCTCGTTTCTCCGGTGCACGAGTTTTTG GTCTTCGTTCTCTGACCTCTCTCTCTGTTTCTATGTTGTGTTCTGTTCCCTCTGTTTCTGCCTTTCTGGTTCTGTTTGGT TTGGAGAAAATGGCTTTTGGTCATGGTCTTAGTTCTGCAGTGTAGGCACTTGCATTATGAATTTTGAGTTTAAGTTTACT ATAATGACATGAATCTTGAGTTATTTTCCTTATCTATGTGATTTTCGATGTGTATATTTTACATAGTATGCTTTTGCATA TGTAGTAGGATCTTATGATCCGATCTACATCCTTCACCTTGATTCTGAGTAGGATCCCGATCCTGACAACATTGATGCAA AGTTCTATCATTAATCATCTGAAGCCTAAACTGCTTAAGGTGCCTTAAGGGTATTTGAAAAGATAGTAAAATCCTAAATT AACTAAAATTCTTGATAAAATCTAATTAGATACATGATCTCAATAAAATTTTAATTTCCTTAAACTAGGAATTTCATCAA AGATAGAATCTCTAAAATTAAGGAAAGGTGTCAATGTTGAATGTCCTAAATAACTTAATTATCATCAAATTTATAAATTA AAAATTATAGAAATGATTCTATATCTATTCTGCATCACTAAGAGGCCTAGAGCTGGATTCTTGTTACTCTCATTCTTCTA AAAAACAAAGTTGAATTTCAGCACTACATAGGTGTGTTTGTTCACTCCCTTTGATTCAAACGTAGAATGGTATTGCATTA GGGGGTGTGATAGATTAGAGATGCAATATAAAAGAACCATTTATGTATTTTCACCTAACAGCTTAGAATATGTTTGGAAG ACCCCCAGTTTTACGTTTTTCCAGTTTCCAAAGCAAAATCAGTGGACTAACACAGATTTCAATAGAAGGATGTGGAAGGA AGGAATCCTTCCGTTTCATTAACTGGATGTTGAATTTCTACGCTACATAGGTGTGTTTGTTCACTCCCTATGCTTCAAAC TTAAGTGTTCTTGCATTAGGGGGTGTGATAGATGCAATATGAAAGAACCATTTATGTGTTTTCACCTAACAGCTTTGAGT ATGTTTGGAAGATCCCCATTTTTACGTTTTTCCAGTTTCCAAAGCAAAATCAGCAGACTAACACAGATTTCAATAGAAGA ATGTGAAAGGAAGGAATCCTTCCATTTCATTCAACTGGCTGCGATCTTAAAACACAGTCAATTGACAATGTTGAATGCCT GAGTGATGAGTATTTTGATATATTTATTATTTTCCTTATTTTAAAAATGCCCACCCCTTGGAAGGCTGACTGGCTAAGTT TTAGTGATTTCTTTCATGATGGACGTTGGTTAGTTGTTCTTGATTGCCGATTTTAAAATGTGTTATGTTTTACTATTATT TATCCAGGTATATGCATTTAGGCCAGCATCTACCTAATCATCTTGAGAATCTTTTTTTAAGAATATTTCTTATGTGATTG TATTCTTTATTGATGTACACATACTTTTTCTGGTCTTGCAGTCAAGGCAAAAAGCTCTTTCAGATCTACAGCAGATGCAT ACTGTTCATGTAAGCTACACGTACACTTATCATGTACTATTTTAATGCAAAATACATATTGCAAAATACATGCTTGAAAA ATATATATTGTAATTGCAATTTTTTTTTTCAAGCATGTATTTTGCAATGTTCTGGATTATCCGCTTCTAAAATAGTACAA TATTTTTCCTTGTAAATTATTAGAAAATATTAGTTTTTTGTGGTATAGTCTTTTGTATATGTTCCTAGGGATCATATAAT TGCTTGCTAATCCTCATCTCTTTTCTCTCCCCCCTGTTTTGGGACCAGATTGAGAAGCTTAGTGACACACAGTGCCAACC TGAGTCACAGCTTAAGTTCATAACTGAGGCCTGGCTGCAGGTAAATGAGTTTTTTTTAATGGTTTTGTTCAGTTTGCTTC ATAATGAGTTATGAAGCTTTAACAAGTTACATTTTTGGGTAGACCAGTTCCCCTCCCCTAATGCTGCTGCTATTCATTGA ACTGAAGCTGGTCATTTCATTATAGTTTTTTTTAGTGTTGGTAATCTTTATGATGGTCTTTGTTATTATAACTGTATGGA ATTTCAATCACGTGGCCATCAATGTTTCACTTTTTCAGATAGTCGAGTGTAGACGAGTGCTGAAATGGACATATGCATAT GGGTATTATTTACATGAAGAAGAGCGTGCCAAAAAACAGTTCTTTGAGTATTTGCAAGGTTCTATTTCTTAACTTGAGTT TAATCAGAAATGTGTTGTTGTGCTTTAGGTGGTTCCCCATAAATAATACTCGGCTTAATTTTTTTCAGGTGAAGCAGAAT CTGGTCTGGAGAGGCTTCATCAATGTGCTGAAAAAGAACTACAGCCATTCCTCAGTGCTGATGATGGCCCATCTAGAGAA TTCAATGACTTTCGTACAAAGCTAGCTGGCTTGACTAGGTACACGTTGCTCCTGATTTGTTAAGCATTTTCCTTATACTC TTGTTTTTATTCTCTCTTTTTTTTGTGGTTCGAATTGGAGTTTGGTTTTAAATTGATATCCTGATATGCTTGTTTTGGCA GTGTGACTAAAAACTACTTTGAGAATTTAGTGAGGGCATTAGAGAATGGTCTATCTGATGTGGACAGTGATGGAGCTGCG TTCAGCAAGGCAACGAGCTCAAGAAATGCGGCAGGGAGCAGCAAGGGGAAAGCCGGAAGAGGAAAGGGAACTTTTCGAAC CAGCAGCATGTCCAGCAGAACGACTGATGATAGTCATTGGAGTTGCGAGGTTTGTACCTTTGCAAATGTCAAATCTTCCA CTGCATGCCAGATTTGCAATCAACCGCGTTGGTGAAAATTTGGGTTCTCCTTTTCAAAACCCTTGCTTCCTGCCGGCCTA AGGTCCACTGCAGCACAAGCTGGAGTTATCCCTCCTACTGTCTTGTTTATACACTGGCTCCACTTAATGAGGCTGTAAGT TTGTGAACAGGATGAAAGGTGTAAGCATAGAAATAAGGTTTCCCTCCTTGCACTCTTACTATTCAATACAACCCAATTTG ATGTATATAGTGTTGTGTCTTAATGTTTAAATATGGGGTTTCTGTTACAGGCTTTTGTAACTGGATATATCATAACACAA CAGATGCTGTAGATGAACACAAATATGCTTGTTTGTAACCTTATTTCTTTCAGTTGATGGTAGCTTTTCTGAGATACATA GGGATGGTCGTGTGTAACTGTAAACTATAAGCTCAGGGTTCGGTTACTTTTTAAGAAATCTTGAAGTAAATGAGATAAAG GCCATACCATATCATTTCATATTATAGCACCTCTTGTTTTGCTGGTTTAACATGCACTCATGTGTGTTTTCAGTTATATA GGTGTGTATGTATT
CDS sequence (LotjaGi3g1v0497500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACTCCGAGGATGATATGCACGATGCCAACGACGTTGAGTCTTTCGACGACGATTTCTACAGTGGCGACGCGGAGGA AGCTCCCTTGGACTACTACAGCGACTACGATGACGACGCCGATGATTACTTCGACGATTCCGATAGGATTGAGTCTCGTT GCCCTGAGCACAATTTTACCATCTTGAAGGAATCAGATATTCAGCTAAGGCAGGAAGAGGATATCAATAGAGTAGCAGGG GTTCTTTCCATATCAAGAGTTGCTGCAAGCATACTACTTCGTCACTACAACTGGAGCGTCAGTAAAGTGCATGATGCTTG GTTTGCTGATGAAGAGGGAGTTAGGAAAGCAGTTGGCTTGTTAGAGAAGCCAGTTGTAGAGTATCCTAATGCTAGAGAGC TTACATGTGGCATCTGTTTTGAAAACTATCCTCGTGCTAGGATTGAAGTGGCTTCTTGTGGTCATCCCTACTGTTTCTCA TGCTGGGAAGGATATATTACCACATCCATTAATGATGGTCCTGGGTGTTTGATGCTGAGATGTCCCGATCCCACTTGTAG TGCGGCTGTTGGTCAAGATATGATTGATCTATTAGCATCCAATGAAGATAAACAAAAGTATGCCCGTTACCTTCGTAGAT CTTATATTGAAGACAATAAGAAGTCAAAGTGGTGTCCTGCTCCTGGATGTGAATATGCAGTTACTTTTGATGCTGGTAGC GGAAATTATGATGTCTCTTGCCTCTGTTCATATGGCTTTTGTTGGAATTGCACCGAGGAGGCTCATCGTCCAGTGGACTG TGGCACCGTAGCAAAGTGGATTTTGAAAAACAGTGCAGAGTCCGAAAACATGAACTGGATACTTGCTAACTCAAAGCCAT GTCCCAAGTGCAAGCGACCGATTGAAAAAAATCAAGGATGCATGCACATGACATGCACTCCTCCATGTAAATATGAATTT TGCTGGCTATGCCTTGGTGCATGGTCAGACCATGGTGAAAGAACTGGTGGTTTTTATGCTTGCAATCGTTATGAAGTAGC TAGGCAAGAGGGAGTGTATGATGATTCTGAACGAAGAAGAGATATGGCAAAGAATTCATTGGAGAGATACACACATTATT ATGAGCGGTGGGCCAGCAACCAAACTTCAAGGCAAAAAGCTCTTTCAGATCTACAGCAGATGCATACTGTTCATATTGAG AAGCTTAGTGACACACAGTGCCAACCTGAGTCACAGCTTAAGTTCATAACTGAGGCCTGGCTGCAGATAGTCGAGTGTAG ACGAGTGCTGAAATGGACATATGCATATGGGTATTATTTACATGAAGAAGAGCGTGCCAAAAAACAGTTCTTTGAGTATT TGCAAGGTGAAGCAGAATCTGGTCTGGAGAGGCTTCATCAATGTGCTGAAAAAGAACTACAGCCATTCCTCAGTGCTGAT GATGGCCCATCTAGAGAATTCAATGACTTTCGTACAAAGCTAGCTGGCTTGACTAGTGTGACTAAAAACTACTTTGAGAA TTTAGTGAGGGCATTAGAGAATGGTCTATCTGATGTGGACAGTGATGGAGCTGCGTTCAGCAAGGCAACGAGCTCAAGAA ATGCGGCAGGGAGCAGCAAGGGGAAAGCCGGAAGAGGAAAGGGAACTTTTCGAACCAGCAGCATGTCCAGCAGAACGACT GATGATAGTCATTGGAGTTGCGAGGTTTGTACCTTTGCAAATGTCAAATCTTCCACTGCATGCCAGATTTGCAATCAACC GCGTTGGTGA
Protein sequence (LotjaGi3g1v0497500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSEDDMHDANDVESFDDDFYSGDAEEAPLDYYSDYDDDADDYFDDSDRIESRCPEHNFTILKESDIQLRQEEDINRVAG VLSISRVAASILLRHYNWSVSKVHDAWFADEEGVRKAVGLLEKPVVEYPNARELTCGICFENYPRARIEVASCGHPYCFS CWEGYITTSINDGPGCLMLRCPDPTCSAAVGQDMIDLLASNEDKQKYARYLRRSYIEDNKKSKWCPAPGCEYAVTFDAGS GNYDVSCLCSYGFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKYEF CWLCLGAWSDHGERTGGFYACNRYEVARQEGVYDDSERRRDMAKNSLERYTHYYERWASNQTSRQKALSDLQQMHTVHIE KLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLHEEERAKKQFFEYLQGEAESGLERLHQCAEKELQPFLSAD DGPSREFNDFRTKLAGLTSVTKNYFENLVRALENGLSDVDSDGAAFSKATSSRNAAGSSKGKAGRGKGTFRTSSMSSRTT DDSHWSCEVCTFANVKSSTACQICNQPRW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 506 | 506 | 0.0 | – | |
| PANTHER | 1 | 506 | 506 | 0.0 | ||
| MobiDBLite | 1 | 25 | 25 | - | – | |
| Gene3D | 130 | 218 | 89 | 3.7E-17 | ||
| SUPERFAMILY | 132 | 217 | 86 | 7.46E-19 | – | |
| ProSiteProfiles | 132 | 345 | 214 | 50.404 | – | |
| CDD | 136 | 186 | 51 | 1.98855E-13 | – | |
| ProSiteProfiles | 136 | 180 | 45 | 9.362 | ||
| Pfam | 205 | 267 | 63 | 1.6E-15 | ||
| SMART | 205 | 267 | 63 | 4.0E-23 | ||
| SUPERFAMILY | 206 | 274 | 69 | 2.08E-12 | – | |
| Gene3D | 263 | 519 | 257 | 3.6E-79 | – | |
| SMART | 271 | 341 | 71 | 0.037 | ||
| Pfam | 284 | 332 | 49 | 8.4E-10 | ||
| SUPERFAMILY | 286 | 334 | 49 | 8.83E-18 | – | |
| MobiDBLite | 530 | 562 | 33 | - | – | |
| Gene3D | 554 | 588 | 35 | 2.4E-5 | – | |
| ProSiteProfiles | 561 | 589 | 29 | 8.739 | ||
| SUPERFAMILY | 561 | 588 | 28 | 3.77E-5 | ||
| SMART | 563 | 587 | 25 | 1.5E-5 | ||
| ProSitePatterns | 565 | 584 | 20 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
| Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. |
Expression pattern of LotjaGi3g1v0497500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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